mRNA_H-paniculata_contig20952.5458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 148 bits (373), Expect = 4.110e-35 Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query: 41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEF--ESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
MTT +C C GS YFATQY +EC+C + G ++ CT ACAGD TCGG A ++Y + ES A ++GCY D+ G RIM DS M++E+C+ C G +Y+GLQYG+EC+CGG+STD +H CN+ C GDS Q CGG AMSVY Y
Sbjct: 229 MTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAIS-----AFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 390
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI) HSP 1 Score: 142 bits (357), Expect = 4.500e-34 Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 2
Query: 23 VKGSTDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVD-SEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
V + MTT +C C GS YFATQY +EC+C G + G ++ CT C+GD CGG A ++Y F + +GCY D+ RIM D S MT+E+C+ CSG +Y+G+QYG EC+CGG STD +H C++ C GDS Q CGG AMSVY Y
Sbjct: 112 VLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGET----STSSLVGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 144 bits (362), Expect = 5.450e-34 Identity = 78/195 (40.00%), Postives = 105/195 (53.85%), Query Frame = 2
Query: 32 STDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFE--------SGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY*KQDKFS*YIVVEIYVSDQ 586
S+ MTT +C C GS YF+TQY +EC+C G + + G ++ CT C G+P +TCGG A S+Y + S Y+GC+ D DRIM +S MT ELC+ C+G SY+ QYG+ECWCG A TDY+KH C + C G+ +TCGG A SVY Y + + V + DQ
Sbjct: 147 SSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFS----------YVGCFQDDQ-DRIMELALTESSSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQ 330
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI) HSP 1 Score: 147 bits (370), Expect = 8.310e-33 Identity = 75/165 (45.45%), Postives = 100/165 (60.61%), Query Frame = 2
Query: 41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
MTT +C C G+ YFATQY +EC+C G E G ++ CT ACAGD TCGG A ++Y + + ++GCY D+ RIM DS MT E+C+ C+G +++G+QYG+EC+CGG+STD +H CN+ C GDS Q CGG AMSVY Y
Sbjct: 656 MTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDEST---PTSSFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 817
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 142 bits (359), Expect = 2.200e-32 Identity = 75/171 (43.86%), Postives = 102/171 (59.65%), Query Frame = 2
Query: 41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGG------YLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
MTT +C C G+ +FATQY +EC+C G + T G ++ CT ACAGD TCGG A ++Y + TG ++GCY D+ RIM DS MT E+C+ C+G +Y+G+QYG+EC+CGG+STD +H C++ C GDS + CGG AMSVY Y
Sbjct: 351 MTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLY--------TGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVYSY 513
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 144 bits (364), Expect = 5.870e-32 Identity = 76/165 (46.06%), Postives = 99/165 (60.00%), Query Frame = 2
Query: 41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGP-ASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
MTT +C C G+ YFATQY +EC+C G + G A CT ACAGD TCGG A ++Y + T ++GCY D+ RIM DS MT E C+ C+G +Y+G+QYG+EC+CGG+STD +H +C++ C GDS Q CGG AMSVY Y
Sbjct: 766 MTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDDVP--TTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSY 928
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.600e-30 Identity = 77/199 (38.69%), Postives = 105/199 (52.76%), Query Frame = 2
Query: 2 RVLTGTSVKG-STDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEF--------------------ESGAGGGGTGGGYLGCYVDKGGDRIMAEKY---VDSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVY 523
RVL+G S+ ++ MTTA CA CEGS YF Q+ ECFCS GD P ELG + C MAC+GD + CGGS A+ +YE+ ES +GC+VD DR+++ ++S MT C C G +Y+G +Y EC+C + D+ NC+ C GDSS+TCGG +A+ VY
Sbjct: 189 RVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYES-----------VGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVY 376
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: A0A8E2JB36_9PEZI (WSC-domain-containing protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JB36_9PEZI) HSP 1 Score: 120 bits (302), Expect = 6.020e-28 Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 2
Query: 41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGT----GGGYLGCYVDKGGDRIMAEKYV-DSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVY 523
M+ CA C G YF +Y EC+C PT P S C ACAG+ + CG M+L+E + G G G Y GC+ D G R++AE+Y D+ MTVE C T C+G +Y+G +YG +C+CG + + + +C+F C G+S + CG + +++Y
Sbjct: 1 MSYETCASYCSGYNYFGVEYGDECYCGDNFTNPTTAAPESDCYFACAGNSSEVCGAGNRMNLFESITVHTGPGNPTIAGYTYAGCHTDSVGARVLAEQYTYDNAMTVEECATFCAGYTYFGTEYGTQCFCGNSFANPTSEAAETDCSFLCPGNSQEYCGAGNRLTMY 167
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: A0A6A6S6Z4_9PLEO (Uncharacterized protein n=1 Tax=Massarina eburnea CBS 473.64 TaxID=1395130 RepID=A0A6A6S6Z4_9PLEO) HSP 1 Score: 129 bits (325), Expect = 4.440e-27 Identity = 61/175 (34.86%), Postives = 99/175 (56.57%), Query Frame = 2
Query: 17 TSVKGSTDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGG----GYLGCYVDKGGDRIMAEKYV-DSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQ 526
T + ++D T A C+ C G +YF +Y+ EC+CS + + + C+M+C+GD CGG ++++ + G Y+GCY D G R++A+ Y+ DS MT+E C CSG +Y+G +YG EC+CG + + + +C FACGG+S + CG D +++YQ
Sbjct: 1058 TKSRATSDNTYAACSSFCSGYQYFGVEYASECYCSNALEYTIQNPSSDCSMSCSGDSSTPCGGPARITVFTSNTTVNVIGNPSIANYAYIGCYTDSVGARVLADGYLADSAMTIEKCAAQCSGYTYFGTEYGSECYCGNGWKNPSQKAAEGDCGFACGGNSLEYCGAGDRLTMYQ 1232
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI) HSP 1 Score: 127 bits (320), Expect = 1.380e-26 Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 2
Query: 32 STDMTTAVCAGICEG--SKYFATQYSKECFCSKPGDEPTELGP---ASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIM-AEKYVDSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQ 526
S DMT +C C G + ++A QY +EC+C + +LG C C GD TCGG + ++ + T G+LGCY D+ DR+ A+K E VE C CSG +GLQYG+ECWCG DY KH +C++ C G+ TCGG DAM++++
Sbjct: 768 SRDMTPTLCNEYCAGQYASFYAVQYGRECWCGDDSTDYAKLGALDMTECAYPCTGDGDLTCGGFDSFEIFSLPAE-----TSQGHLGCYADEQDDRLFRADKIRLDENGVEACRAACSGSPLFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIFE 933 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20952.5458.1 >prot_H-paniculata_contig20952.5458.1 ID=prot_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPASCTMACAGDPFback to top mRNA from alignment at H-paniculata_contig20952:2..3446+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20952.5458.1 ID=mRNA_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3445bp|location=Sequence derived from alignment at H-paniculata_contig20952:2..3446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20952:2..3446+ >mRNA_H-paniculata_contig20952.5458.1 ID=mRNA_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig20952:2..3446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |