mRNA_H-paniculata_contig20940.5457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20940.5457.1
Unique NamemRNA_H-paniculata_contig20940.5457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20940.5457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20940contigH-paniculata_contig20940:848..1305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20940.5457.1prot_H-paniculata_contig20940.5457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20940 971..1305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.0067987-UTR-H-paniculata_contig20940:847..9701622929551.0067987-UTR-H-paniculata_contig20940:847..970Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20940 848..970 -
1691480910.235787-UTR-H-paniculata_contig20940:847..9701691480910.235787-UTR-H-paniculata_contig20940:847..970Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20940 848..970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.0195513-CDS-H-paniculata_contig20940:970..10381622929551.0195513-CDS-H-paniculata_contig20940:970..1038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20940 971..1038 -
1691480910.245911-CDS-H-paniculata_contig20940:970..10381691480910.245911-CDS-H-paniculata_contig20940:970..1038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20940 971..1038 -
1622929551.033061-CDS-H-paniculata_contig20940:1151..13051622929551.033061-CDS-H-paniculata_contig20940:1151..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20940 1152..1305 -
1691480910.2549767-CDS-H-paniculata_contig20940:1151..13051691480910.2549767-CDS-H-paniculata_contig20940:1151..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20940 1152..1305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20940.5457.1

>prot_H-paniculata_contig20940.5457.1 ID=prot_H-paniculata_contig20940.5457.1|Name=mRNA_H-paniculata_contig20940.5457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
back to top

mRNA from alignment at H-paniculata_contig20940:848..1305-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20940.5457.1 ID=mRNA_H-paniculata_contig20940.5457.1|Name=mRNA_H-paniculata_contig20940.5457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig20940:848..1305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20940:848..1305-

>mRNA_H-paniculata_contig20940.5457.1 ID=mRNA_H-paniculata_contig20940.5457.1|Name=mRNA_H-paniculata_contig20940.5457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig20940:848..1305- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
back to top