mRNA_H-paniculata_contig2093.5454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2093.5454.1
Unique NamemRNA_H-paniculata_contig2093.5454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.960e-92
Identity = 155/190 (81.58%), Postives = 162/190 (85.26%), Query Frame = 3 
Query:   27 MSQNKRKAWDATVQGNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRAR-RSGKPLTGKLK-KGEKDPWKERKFKSLHQVLYELTAELCVYPGGATAVSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKFA 590
            MSQ+KRKAWDATVQ + H  TR   KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTE+   EQDDEF LDEDDERG   R R R+GK    K K KGEKDPWKERKFKSLHQVLYELT EL  YPGGATAVSIEAP SK PP++FCSVCGYHGLYTCTRCGSRFCSSKC +QHKETRCLKFA
Sbjct:    1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFA 190
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.720e-36
Identity = 92/191 (48.17%), Postives = 116/191 (60.73%), Query Frame = 3 
Query:   27 MSQNKRKAWDATVQ---GNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKLKKGEKDPWKERKFKSLHQVLYELTAELCVYPGGATAVSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKFA 590
            MS NKR AWD  +      +  + +K  KR+SGR  VLSK+M+VVDEETR +V+DARLEALEADNY E    E D+ +   E++ R   +R  +  + +  + +   K     RK K L Q +YE   E    P   TA    A  S  P + FCSVCGY GLYTCTRCG R+CSSKC++ HKETRCLKFA
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRK-KPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
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BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.050e-30
Identity = 78/189 (41.27%), Postives = 112/189 (59.26%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGN---VHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKLKKGEKDPWKERKFKSLHQVLYELTAELCVYPGGATAVSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            ++N ++ WD T+  +   V GS + + KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E  +   +D F LD+DD+     + +   K    ++ +        RK KSL Q+++E   +  +       V+     +K PP+ FC VCG    YTC RCGS+FC  +C +QHKET CLKF
Sbjct:    3 AKNAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDDAKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD-GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190
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BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.350e-29
Identity = 83/190 (43.68%), Postives = 114/190 (60.00%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGNVHGSTRKTPK-RASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKLKKGEKDPWK-ERKFKSLHQVLYELTAELCVYPGGATAVSIEAP--ESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            ++N ++ WD T+  +   +   TPK R SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E    ++ D F LD+D+ +    +A+   +P    L    +   +  RK KSL Q ++E   ++   P  +T   + A    S  PP+ FC VCG    YTC RCGSRFCS +C DQHKET CLKF
Sbjct:    3 AKNAKRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDE-DMFILDDDEPKKPKSKAKAK-QPKAAPLVPTARGRHRIVRKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190
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BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.120e-29
Identity = 83/199 (41.71%), Postives = 117/199 (58.79%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGN---VHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKLKKGEKD-PWKE------RKFKSLHQVLYELTAELCVYPGGATA---VSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            ++N ++ WD T+  +     GS     KR SGRT+ +SK+M+ VDEETR QV++ARL+ALEADNY E  ++  +D F LDEDD+      A+++ KP +    KG    P  +      RK KSL  +++E   +  V PG  +    V+      K PP+ FC VCG   +Y+C RCGS+FC  +C +QHKET CLKF
Sbjct:    3 TKNAKRQWDQTMASSGVVAPGSGHVPRKRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDDAV----AKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGD--VAPGNDSVINYVTAAVKPPKTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195
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BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.130e-26
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 3 
Query:   42 RKAWDATVQGNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPL--------TGKLKKGEKDP---WKERKFKSLHQVLYELTAELCVYPGGATAV---SIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            RK W+ T++     +     +R+S R   +S+ +RVVD ETR  V++ARL+ALEADNY EE +  QDD +   + +E     +A+              T K K    DP   WK+RK+K L QV+YE   +      GA +V   S     S+ PP++FCSVCGY G + C RCG R+C  +C + HKETRC+KF
Sbjct:    9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEE-HVAQDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAK----DPGHKWKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKF 195
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC)

HSP 1 Score: 112 bits (280), Expect = 3.440e-25
Identity = 82/201 (40.80%), Postives = 111/201 (55.22%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVG----QRARRSGK---PLTGKLKKGEKDPWKERKFKSLHQVLYELTAELCVYPG-GATAVSIEAPESKQPPKSFCSVCGY------HGLYTCTRCGSRFCSSKCSDQHKETRCLKFA 590
            S+N ++ WD T+  +         KR SGR V +SK+M+ VDEETR QV++ARL+ALEADNY E   +  D++  +++D    VG     ++R  GK   P+      G +     RK KSL Q+++E   E     G G   V+     +  PP+ FC VCGY         Y C RCGSRFCS KC DQH+ET CLKF+
Sbjct:    3 SKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTEDGDDEDLYIEDD---AVGPKKSSKSRAKGKAKAPVVPISSSGRRRV--VRKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.060e-25
Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGNVHGSTRKTPK-RASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPL--TGKLKKGEKDPWKERKFKSLHQVLYELTAELCVYPGGATAVSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            ++N ++ WD T++ +   +  + PK R SGRTV +SK+M++VDEETR QV++ARL+ALEADNY E Q  + +D F L++                   T  + +        RK KSL Q+++E   +         + +++ P  K+PP+ FC+VCG+   Y C RCGS+FCS +C DQHKET CLKF
Sbjct:    3 AKNAKRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVLEDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.740e-25
Identity = 87/222 (39.19%), Postives = 114/222 (51.35%), Query Frame = 3 
Query:   30 SQNKRKAWDATVQGNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKLK---KGEKDPWK-------ERKFKSLHQVLYEL--TAELCVYPGGATAVSIEAPESKQPPKSFCSVCGY------HGL------------------YTCTRCGSRFCSSKCSDQHKETRCLKF 587
            S+N ++ WD T+  +     +   KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E  ++ +D++  +++D           S KPL  + K   KG   P          RK KSL  +++E   T E    P   TA       +K PP+ FC VCGY      H                    YTC RCGSRFCS +C DQHKET CLKF
Sbjct:    3 SKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDS-------GTPSKKPLKSRAKAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAA---VKPAKTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214
[Close]
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD)

HSP 1 Score: 111 bits (277), Expect = 1.000e-24
Identity = 83/198 (41.92%), Postives = 114/198 (57.58%), Query Frame = 3 
Query:   42 RKAWDATV-QGNVHGSTRKTP---KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEEQN------NEQDDEFGLDEDDERGVG-----QRARRSGKPLTGKLKKGEKDPWKERKFKSLHQVLYELT-AELCVYPGGATAVSIEAPESKQPPKSFCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKF 587
            +K W+ T+ +     +T K     KR SGRTV LSK+M+ VDEETR  V++ARL+ALEADNY  +        N+ DD +  D D   G G     +RAR++ K  T    K +   WK    KSL Q+++E   A   V P     +++ A  S +P + FC VCG+  +Y+CTRCGSR+C  KC D+HKE+ CLKF
Sbjct:    8 KKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDDANDVDDMYIDDGDVPSGAGTPGKDKRARKNRKLAT----KAKAKKWK---VKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2093.5454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J5_ECTSI2.960e-9281.58HIT-type domain-containing protein n=2 Tax=Ectocar... [more]
W7TJ72_9STRA1.720e-3648.17Zinc finger, HIT-type n=1 Tax=Nannochloropsis gadi... [more]
W4G490_9STRA7.050e-3041.27HIT-type domain-containing protein n=7 Tax=Aphanom... [more]
A0A485KXM9_9STRA1.350e-2943.68Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TKA6_9STRA4.120e-2941.71HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A7S1U8Q5_9STRA5.130e-2639.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A067BTG0_SAPPC3.440e-2540.80HIT-type domain-containing protein n=3 Tax=Saprole... [more]
A0A6G0X8S1_9STRA4.060e-2539.68HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A1V9YMM7_9STRA5.740e-2539.19Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3X0J0_GLOUD1.000e-2441.92HIT-type domain-containing protein n=1 Tax=Globisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2093contigH-paniculata_contig2093:15327..20023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.6e-76
Seed eggNOG ortholog2880.D7G8J5
Preferred nameZNHIT1
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
EggNOG free text desc.regulation of histone deacetylation
EggNOG OGsKOG3362@1,KOG3362@2759
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-14_003240.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Exons6
Model size1464
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2093.5454.1prot_H-paniculata_contig2093.5454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2093 15353..19155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.3986902-UTR-H-paniculata_contig2093:15326..153521622929550.3986902-UTR-H-paniculata_contig2093:15326..15352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2093 15327..15352 +
1691480909.900137-UTR-H-paniculata_contig2093:15326..153521691480909.900137-UTR-H-paniculata_contig2093:15326..15352Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2093 15327..15352 +
1622929550.5630965-UTR-H-paniculata_contig2093:19155..200231622929550.5630965-UTR-H-paniculata_contig2093:19155..20023Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2093 19156..20023 +
1691480909.9758794-UTR-H-paniculata_contig2093:19155..200231691480909.9758794-UTR-H-paniculata_contig2093:19155..20023Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2093 19156..20023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.4350755-CDS-H-paniculata_contig2093:15352..154401622929550.4350755-CDS-H-paniculata_contig2093:15352..15440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 15353..15440 +
1691480909.9133394-CDS-H-paniculata_contig2093:15352..154401691480909.9133394-CDS-H-paniculata_contig2093:15352..15440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 15353..15440 +
1622929550.4611807-CDS-H-paniculata_contig2093:15801..158601622929550.4611807-CDS-H-paniculata_contig2093:15801..15860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 15802..15860 +
1691480909.9239876-CDS-H-paniculata_contig2093:15801..158601691480909.9239876-CDS-H-paniculata_contig2093:15801..15860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 15802..15860 +
1622929550.4836726-CDS-H-paniculata_contig2093:16248..163021622929550.4836726-CDS-H-paniculata_contig2093:16248..16302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 16249..16302 +
1691480909.931884-CDS-H-paniculata_contig2093:16248..163021691480909.931884-CDS-H-paniculata_contig2093:16248..16302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 16249..16302 +
1622929550.5072217-CDS-H-paniculata_contig2093:17688..178101622929550.5072217-CDS-H-paniculata_contig2093:17688..17810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 17689..17810 +
1691480909.9422998-CDS-H-paniculata_contig2093:17688..178101691480909.9422998-CDS-H-paniculata_contig2093:17688..17810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 17689..17810 +
1622929550.531268-CDS-H-paniculata_contig2093:18285..183311622929550.531268-CDS-H-paniculata_contig2093:18285..18331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 18286..18331 +
1691480909.9534314-CDS-H-paniculata_contig2093:18285..183311691480909.9534314-CDS-H-paniculata_contig2093:18285..18331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 18286..18331 +
1622929550.5458398-CDS-H-paniculata_contig2093:18954..191551622929550.5458398-CDS-H-paniculata_contig2093:18954..19155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 18955..19155 +
1691480909.9661272-CDS-H-paniculata_contig2093:18954..191551691480909.9661272-CDS-H-paniculata_contig2093:18954..19155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2093 18955..19155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2093.5454.1

>prot_H-paniculata_contig2093.5454.1 ID=prot_H-paniculata_contig2093.5454.1|Name=mRNA_H-paniculata_contig2093.5454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MSQNKRKAWDATVQGNVHGSTRKTPKRASGRTVVLSKSMRVVDEETRNQV
KDARLEALEADNYTEEQNNEQDDEFGLDEDDERGVGQRARRSGKPLTGKL
KKGEKDPWKERKFKSLHQVLYELTAELCVYPGGATAVSIEAPESKQPPKS
FCSVCGYHGLYTCTRCGSRFCSSKCSDQHKETRCLKFAG*
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mRNA from alignment at H-paniculata_contig2093:15327..20023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2093.5454.1 ID=mRNA_H-paniculata_contig2093.5454.1|Name=mRNA_H-paniculata_contig2093.5454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4697bp|location=Sequence derived from alignment at H-paniculata_contig2093:15327..20023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGGCGGACTGGTGATAGAACGAGATGTCTCAGAACAAGAGGAAGGCA
TGGGATGCCACCGTACAGGGCAATGTCCATGGATCAACCCGAAAAACACC
TAAGAGAGCATCTGGTGAACTCCGTTTTTCTAAGTGGAACGCAACCGTTT
CACTTTATAACTGTTGTCTACGTTGTCCGTATGTGTCCTGTACTCTGGAA
ACCAAGTGCCAGAGCGCCCTACACCGTACGGATTTACTGTAGTTGTCTGT
GTGGCATCTTGCATCCCGCGCTGTATACCAAGCCTTTCCACTTCCTTCCT
TGCTATTGAGACCCTGTGATATATCGCTATGTTGAGAGATGTTTCAAACA
TTGAATCGGAGAAACGGTCGTAGCAGGTTCCTCATTCTGTACCTGCATTT
ACATGTACACATGACATAACCTAGTTCCTGTCGTCTAGCTCATGATATCT
TTCGGTCGTCCTGTGTACTGGACAGGACGCACGGTGGTGCTGAGCAAGTC
GATGCGTGTTGTGGATGAAGAAACACGGAATCAGGTGTGCCCAATTGCAG
ACATTACATGGTACGAGTACGGACAAACCAACGAATGAAACTGGGCGCAA
CATGGGCACAGATTTATGGTCGTGGTGTGATGGTGGAGTGTGGCCTTGAC
ACAAGAATCAAAGAATGGAATATCGTGTGCTTGTATCTAGTCCACGCTGC
AGGATGAGGAGCGCCTTTCAGCCCAGGAATACTATAATAGCTACTGTCTA
TATGCACGAGCCGTCATATTGGTGCACCATTGGCTGATTACCGTTAGTTA
CCGTTAGTTACCGTTGCGAACGGAGATCTGCTATCCTTGATTTCTTTTCA
CCTTGGTGAGGCGGAAGTCGTCCCTTCACCGGACCCATTTGATGCTGTTG
CTACTTGGTGCTTGCCACCCAGGTTAAAGACGCGCGTTTGGAGGCTTTGG
AGGCAGACAACTACACCGAAGAACAGGCAAGACCTGTTCGTCGTTGTAGA
CAAAATTGAGAAAATAACAAACAAACACATCAGCAGACAGTTGAAACAGC
TGCACCTAGAGATAGGTAGACAAGCAGCCCAAGCCTCAAATGATTGTTCA
TCTCGTACAGGTATGCTTCGTCCGAAGGTAGGTGCAGTATTTCGCGAATA
GCGGAGCAGGGTGGTCCGTTCTTTCCTTTTTGTAACCATCGTCGACTACG
GCATGACGCAACGACAAAGTTGCACGAACAGACTGTAGTCAACTACTGCA
ACAAAGAATAGGCGCAGATGCGTGCTGATGGGACTCTTCTTTTGCGAAAC
TGCCCAGCCCCTCGCCCCTCGCTCCCTTTCACTGCCAATTCATTGTATTT
ACAATTGATTCAAGCTGTGCTCCTATACAATTTGCTGAAAAAATCGTCTT
GTGCAAGTATATATAAAAATGTCCACCCTTTCAAGGGTTATGGATATTTC
ACCCCCCAAGACAAACACGAATACTTGGCGTATTCGCCACGAAAATTAAA
AAATATATTCACCTGAGTTTCAGAGTGAGCTCGTATATGTTATGTGCCCC
GGACCATCCATGACTGTTGACAATGCTCGTAAATCGAATAGGCTGGGGTG
GGTACTCCGTTCTATGTGTCCGCTCATTCTGTGTTCCAGGCGAATATATA
TATATATATATTTCGTGGCGAATGCGCCAAGCACTGGTATTTTTCCGGGG
GTTGAAATAGTTCATGCCCCCGACAAATACGAATACAAGACATGAATAAA
TATGATGAATCTGGAATTAATGTTGCATCTGTTTGAGTAGGGGAAAGTGT
CTATGTGATGCCATGGAGCAACGTAATCGATATGCCATGGAGCATCGAAA
AGCTCGAGCAGATAGAGTATTCAATCTATTCAGTACCATCCGGAAAATAA
ATAGGACCTACATCAGTGACTGTTCGCCGGTTACACGACTACCTAGTAAC
CATCTCTAGAGCGTCCGTTCATAGATTCATAAATGAATAGTTACGTGTTT
ACCAAAGACAATTAATGATAGCTCGAGATGGTTGCGAATGCTCCATTCGC
ATTTGTCCGGGGGGTGAAATATTTCCATGTGCAATCCGTACGTCACACTA
AAACAGAACAATACTACAATAGGTGTTTGGGTGGTTGCCATTTCCAAACC
ATATCTCCTTGGGTCTAATCTTTCGTCTTTGCTGCTTCCATCTTAACGTA
ATGTTTGTGAAGGTGATTCCCCCAACCCATCCTCTCCGCCGAGGCACCCA
AAGCGTTGTGGTAGAGCATTTATTTTCCTCGAGAGTTGTTTTTCTCGGAC
ATACACCAATATGGCCGCGTCTTGGTCGCCTGTGTTCTGTGCGTCTCGAT
GCCGACAAACAGAACAACGAGCAAGATGATGAGTTTGGCTTGGATGAAGA
CGATGAGCGAGGAGTCGGGCAACGGGCCAGGAGAAGCGGAAAGCCGCTCA
CTGGCAAACTGAAGAAGGGGGAGAAGGATCCATGGTAGGCAGTGAAGGGG
GGGAGGGAGGGAAGGGGACGGGGACGGGGAATGGGGTCAACCGATCTATG
CGCTCTTTGCTTTCACAATCCTCTTGACATATAATACTCCAAAGCAAAGT
TTTCGCGTGAAACAGTAAACAGGCGACACATTAACAGCCGCCGTGCAGAA
TCTCGGTGCTTACAGGTCGGGAGAGGATGGCCGCAGCCATTCGCCCTACG
GTCCGTTTTATATAGCGTCGGTGGAGTAAACATTTCAACGATGAGTTCAA
ACTGTTCCTGCTCACAACGTTAGGATCGGCTGCCGAATGACTTGTGGATC
CTTTCGTCAACATTTTGATACAAAAGGTAGACTTTGCTAGGCTCCTGGTT
GTTTCGCCTAGTACGAATCCATTTGAGTTTATATGCCACTTCTCTTGAGT
CACGCCTTCTCGGCCGTTTTTCTGTTTGTTTTTTACGCTTTTCCTGTGAT
GTGATGCAGGAAAGAGCGAAAGTTCAAGAGCCTGCACCAGGTCCTCTACG
AACTGGTGAGAACACAGACGCTGTTGACTGGCGCCGTCCACGTACAACGT
AATTTAAATGTTTTTACTTGAAGCTAACTAAGTTTCAGTGCGGTGTGCGA
GCGTAAAGCGACACTATACGTGGCTACTGTAATTTGCTAGTTCTTTGTCC
CATGATGTACATGCTGTCCTGCTGATCAAGTTCTCCTCGGTAAATGGTTG
GGTATGTTAGTGTCATTGTGTGCCCCCCCCCCCCCCTCCTAGTTGGTCTT
GTGCCGGATGATATATATAGCTGTGAGAGAAGGCTACGGAACCGTAGCGT
GTCGTCTACGTGTACTTGACAAAAACACTTAGGCTGTTGTACATATTGCC
CAGCGGTTTACCCGTTTTTCCTTGGGTTGTGTGGAAAATTTGTGTGTTGG
CGTTTAGTGTTCCCTGCTATGCAGTATACACACGAGTTAAATGCACTACT
AGCAGCCCACTGGCTGTTTACCCCCCAAGCTATGGTCGCAGTCCTGCCAC
TCCCCACCACCCTCTCACGACAACCCCCACCTTACGGTCTCCATGATCAA
GCAGCACAAAATCGTGGGTCCAAAAACGTTCACCCTCGTCGCATGCTGTG
CCCGTGTCGCATTTATCGATCGGTGCAGACTGCAGAGCTCTGTGTGTATC
CCGGAGGAGCCACGGCTGTGAGCATTGAGGCCCCTGAATCTAAGCAACCG
CCCAAGTCATTCTGCTCCGTGTGCGGCTACCACGGGTTGTACACATGCAC
ACGCTGCGGGTCGCGCTTTTGCAGCTCCAAGTGTAGCGATCAGCACAAGG
AAACTCGCTGTCTCAAGTTTGCGGGATGATTTAGGGATTTGTTTGGATGT
TCATATGATGCCACCTAGCGGTAGACGTTTTTCGGGGTGATTCGTGTGCT
TGGAGGGGGGGGGGCTGTAGTGTCAATATCCGTAAGGGGAATGGTATAGT
CGGTTGTGCGCGCGTGCGCGCGCGTGTGTGTGTTGGGTTTTATTGGATTG
AATTGTGTTATATATATTTTTTAGGTGTGCATAGTTTGTTCCCCCGTGTG
TTCTCTGTGTTGTTTGACGTGGGGAGTAGATCCGACAGCACAAAAGACTG
TCGGCAGTGTTTCTTTTATACTTTTTTTCTTGTCTTTTCTGCTGTTCGTA
TTGTGAAAAGCACCATAAAAATTAGTTTTGGTGAATACGAGTCGAGCATA
GTTCGTTTGAAATTTTTGTCGGCAGGCTTATGTTACGGTGTTTTCTTTTT
TCGGGAATAATGGCTGGTGAGGCAGGCTGATGTGGCATTCAGTGCTTGCA
TAACCACAGATAATGTGGACGGGAAGAAGCGTGGGAAGTGGGAAAGGGTG
CCTGTGGTCCGTATGCACGTTGTCGAAGTGACGAACCACTGTAATCACTC
AGAGTCGAACCGGTGACTACGAATCGCGTAGAAGCATTGATTCTTCTATG
AATGTAGAGATTCGGCAGCAAGGATGGCTAAAATACAAATAATTAGAAGA
GGATAATATCCTACTGTGCATCGGGGCACGCAGAGGCTTTGCGCGCGTTA
AGCCGCCTCTGGTTACGGCGCTGCCGAATGAAGTGAATCAGATGAATAGA
TATTCAGTGCAAATACACCAGCAAGTACGTGTGCTGAGCTCACTAGGCCG
AGGTTCTCGAGAGGTGGTGCAGCGTCGATTGCGACTTTCCGCTGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2093:15327..20023+

>mRNA_H-paniculata_contig2093.5454.1 ID=mRNA_H-paniculata_contig2093.5454.1|Name=mRNA_H-paniculata_contig2093.5454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig2093:15327..20023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCAGAACAAGAGGAAGGCATGGGATGCCACCGTACAGGGCAATGT
CCATGGATCAACCCGAAAAACACCTAAGAGAGCATCTGATGTCTCAGAAC
AAGAGGAAGGCATGGGATGCCACCGTACAGGGCAATGTCCATGGATCAAC
CCGAAAAACACCTAAGAGAGCATCTGGACGCACGGTGGTGCTGAGCAAGT
CGATGCGTGTTGTGGATGAAGAAACACGGAATCAGGACGCACGGTGGTGC
TGAGCAAGTCGATGCGTGTTGTGGATGAAGAAACACGGAATCAGGTTAAA
GACGCGCGTTTGGAGGCTTTGGAGGCAGACAACTACACCGAAGAACAGGT
TAAAGACGCGCGTTTGGAGGCTTTGGAGGCAGACAACTACACCGAAGAAC
AGAACAACGAGCAAGATGATGAGTTTGGCTTGGATGAAGACGATGAGCGA
GGAGTCGGGCAACGGGCCAGGAGAAGCGGAAAGCCGCTCACTGGCAAACT
GAAGAAGGGGGAGAAGGATCCATGAACAACGAGCAAGATGATGAGTTTGG
CTTGGATGAAGACGATGAGCGAGGAGTCGGGCAACGGGCCAGGAGAAGCG
GAAAGCCGCTCACTGGCAAACTGAAGAAGGGGGAGAAGGATCCATGGAAA
GAGCGAAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAACTGGAAAGAGC
GAAAGTTCAAGAGCCTGCACCAGGTCCTCTACGAACTGACTGCAGAGCTC
TGTGTGTATCCCGGAGGAGCCACGGCTGTGAGCATTGAGGCCCCTGAATC
TAAGCAACCGCCCAAGTCATTCTGCTCCGTGTGCGGCTACCACGGGTTGT
ACACATGCACACGCTGCGGGTCGCGCTTTTGCAGCTCCAAGTGTAGCGAT
CAGCACAAGGAAACTCGCTGTCTCAAGTTTGCGGGATGAACTGCAGAGCT
CTGTGTGTATCCCGGAGGAGCCACGGCTGTGAGCATTGAGGCCCCTGAAT
CTAAGCAACCGCCCAAGTCATTCTGCTCCGTGTGCGGCTACCACGGGTTG
TACACATGCACACGCTGCGGGTCGCGCTTTTGCAGCTCCAAGTGTAGCGA
TCAGCACAAGGAAACTCGCTGTCTCAAGTTTGCGGGATGA
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