mRNA_H-paniculata_contig20920.5452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20920.5452.1
Unique NamemRNA_H-paniculata_contig20920.5452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.840e-32
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:  196 PAGGSLYFEAHLMFDKSELSKLQADVVIAPVVEQKLAAYTLVAGGGKALDLVSSLKASKIVVMPNAEVDFEGPLGQVVTEANTQEEFLQLARGNDVEVVLVRATEEVDVWP 528
            P GGSLYFE HL FD+SELSKL ADVVI PVV+Q +  Y LV GG KALDL S+L ASK+V M NA+VDF GPL +VV E  T E FL++A+  +VEVV+ +  +   VWP
Sbjct:  187 PEGGSLYFEPHLFFDESELSKLHADVVITPVVQQNVGPYPLVCGGAKALDLASTLSASKLVTMANAQVDFSGPLAKVVVEEGTLEGFLEMAKRTEVEVVVPQPAKTASVWP 297
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BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Match: A0A7R9UGN8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGN8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.070e-14
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  202 GGSLYFEAHLMFDKSEL--SKLQADVVIAPVVEQKLAAYTLVAGGGKALDLVSSLKASKIVVMPNAEVDFEGPLGQVVTEANTQEEFLQLAR 471
            G S+Y+E H   D +EL  S  +AD+VI+PVVEQ L A+TLV GGG+ LD+  +L A  I+ + N E+  EGPL  ++    TQEEFL LA+
Sbjct:  186 GPSVYYEPHGDVDPAELRRSGARADIVISPVVEQNLPAFTLVHGGGRTLDIARALDAKAIIPLRNGELRTEGPLASIIEARGTQEEFLSLAK 277
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BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Match: C5YTD8_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5YTD8_SORBI)

HSP 1 Score: 67.8 bits (164), Expect = 9.900e-9
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  205 GSLYFEAHLMFDKSELS--KLQADVVIAPVVEQKLAA-YTLVAGGGKALDLVSSLKASKIVVMPNAEVDFEGPLGQVVTEANTQEEFLQL 465
            G LY+E H ++D+S L   +LQADVVI PVV+Q L A +TLV+G   A+DL   L+A  +V M N +VD  G L  V+T+  T + F  L
Sbjct:  255 GLLYYEPHCVYDRSFLEDKRLQADVVITPVVKQLLPANFTLVSGQEDAVDLARLLRARYVVPMSNGDVDAGGLLATVLTKQGTTQSFQAL 344
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BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Match: A0A1E5VE13_9POAL (Uncharacterized protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VE13_9POAL)

HSP 1 Score: 66.6 bits (161), Expect = 2.300e-8
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  205 GSLYFEAHLMFDKSELSK--LQADVVIAPVVEQKLAA-YTLVAGGGKALDLVSSLKASKIVVMPNAEVDFEGPLGQVVTEANTQEEF 456
            G LY+E H ++D S L K  LQADVVI PVV+Q L A +TLV+G   A+DL   L+A  +V M N +VD  G L  V+++  T E F
Sbjct:  244 GLLYYEPHCVYDGSFLEKKRLQADVVITPVVKQLLPANFTLVSGQEDAVDLARLLRARYVVPMSNGDVDAGGLLAAVLSKQGTTESF 330
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BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Match: D8TAY5_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TAY5_SELML)

HSP 1 Score: 65.5 bits (158), Expect = 3.590e-8
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  211 LYFEAHLMFDKSELSKLQADVVIAPVVEQKLAAYTLVAGGGKALDLVSSLKASKIVVMPNAEVDFEGPLGQVVTEANTQEEF 456
            +Y E H +FD+  L    ADVVI PV++QKL  +TLV+G   A++L  +L+   +V M N ++D +G L +++ E  T E F
Sbjct:  196 IYIEPHCVFDRKLLQGKTADVVITPVIQQKLPLFTLVSGQEDAVELAKTLQPRYVVPMNNGDLDAKGILAKLLVEVGTVESF 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20920.5452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1Y2_ECTSI3.840e-3260.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UGN8_9STRA2.070e-1448.91Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
C5YTD8_SORBI9.900e-946.67Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]
A0A1E5VE13_9POAL2.300e-848.28Uncharacterized protein n=1 Tax=Dichanthelium olig... [more]
D8TAY5_SELML3.590e-840.24Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20920contigH-paniculata_contig20920:66..2584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog2880.D7G1Y2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2QQUU@2759,COG2220@1
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-07_003700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1268
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20920.5452.1prot_H-paniculata_contig20920.5452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20920 803..2482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.057173-UTR-H-paniculata_contig20920:65..8021622929550.057173-UTR-H-paniculata_contig20920:65..802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20920 66..802 -
1691480909.7457726-UTR-H-paniculata_contig20920:65..8021691480909.7457726-UTR-H-paniculata_contig20920:65..802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20920 66..802 -
1622929550.1164858-UTR-H-paniculata_contig20920:2482..25841622929550.1164858-UTR-H-paniculata_contig20920:2482..2584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20920 2483..2584 -
1691480909.7768629-UTR-H-paniculata_contig20920:2482..25841691480909.7768629-UTR-H-paniculata_contig20920:2482..2584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20920 2483..2584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.0714798-CDS-H-paniculata_contig20920:802..10041622929550.0714798-CDS-H-paniculata_contig20920:802..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20920 803..1004 -
1691480909.760134-CDS-H-paniculata_contig20920:802..10041691480909.760134-CDS-H-paniculata_contig20920:802..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20920 803..1004 -
1622929550.0889163-CDS-H-paniculata_contig20920:2255..24821622929550.0889163-CDS-H-paniculata_contig20920:2255..2482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20920 2256..2482 -
1691480909.768672-CDS-H-paniculata_contig20920:2255..24821691480909.768672-CDS-H-paniculata_contig20920:2255..2482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20920 2256..2482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20920.5452.1

>prot_H-paniculata_contig20920.5452.1 ID=prot_H-paniculata_contig20920.5452.1|Name=mRNA_H-paniculata_contig20920.5452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MNTLGTLPLGTPPPVPHFSHLCFPRCCDYLAPAGGSLYFEAHLMFDKSEL
SKLQADVVIAPVVEQKLAAYTLVAGGGKALDLVSSLKASKIVVMPNAEVD
FEGPLGQVVTEANTQEEFLQLARGNDVEVVLVRATEEVDVWP*
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mRNA from alignment at H-paniculata_contig20920:66..2584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20920.5452.1 ID=mRNA_H-paniculata_contig20920.5452.1|Name=mRNA_H-paniculata_contig20920.5452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2519bp|location=Sequence derived from alignment at H-paniculata_contig20920:66..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTGTATGTGTGCATGATGTCCTATGTTACCGCTTATCCTCTCGTCAGC
TTGACATCTCTCGGGGCTCGAGATTTTGGTGTTTTGGGGTTCCCATCGTC
CAATGAATACCCTAGGTACCCTCCCCCTAGGTACCCCCCCTCCTGTCCCT
CACTTCTCTCACTTATGTTTCCCGCGCTGTTGTGATTATCTAGCACCGGC
TGGAGGATCGTTATACTTCGAAGCGCATCTGATGTTTGACAAATCGGAGC
TGTCCAAGCTGCAAGCAGACGTGGTTATAGCTCCCGTCGTAGAGCAGAAG
CTAGCGGCCTACACCCTTGTAGCCGGGGGGTGAGTGGAACGTTGCTTTTT
TGTTTGTTATCCTTTTGTTCGTAGGGCGTTCGTTGCACATGCACATGGGC
ATGACTATTCGACCCTAAAGTGCGGACGGCGAGAAGGGATGTACGTGATG
ATGTTTATATCCGAACTCGCCTTCTTTTTTTTTGTGTGTTTTTCCATCCT
TTTTTTTTGTTTTTGTTTTTGTTTTCAACGCTGAATGAAGGCTGAATGAA
GGCTGGATGAATGACCTATTGTAAACGTGACAATCTCCTGATTGATGAAA
ATGGGAAATACCCCCCTCGTTACCGTATCGACTCTGTGGTTCGTTTCTGC
ATGATTGAATTGTTGAAATATTTATTTCCCCTCTTCAATTAAAAGAAAGG
ACAAGCCTAACAACTACGGCCTGCAAAATATGATTACGCGCCCCCTCCCC
TCCCATCTCTTGATACGATTGTGCTGGTAATTATTCCGAAGTGACTTTAA
ACTTGACCTGTATAACCCCAACATACCCCCTCCCCCGAAGAGAAGGTAGA
TACCTTGTGACATCTGACCGCGGGTCTGAGGAACTACACTTAAGTCTATA
TTTTTTCTTTGTCAAGTAAGGGTGTACCGTCTTTTTGCAGGATGAGACAA
TATATATAATGATGCTACGATATTTGGCTCCGCACGGTCAATCCGGTCAG
TTCCTGTCTGCGCTTTCACCGAGCTATCTATCGCATGCAACACTTTTAGT
TCCTAAGCAGGGTGGGCTGGTGGGTGGATGGATGGGAGCGGGGGGGAGGG
TGACTTTTCAGCTTAGTTTGTTTGTTTCCCTTAGTTTCTTTCCGATTCGG
AAATTCTTCAGTTTTGACAAAACACACACACGCACACACACACAGTTCAA
TTTTTCTTCCTTTCTGAACCAATTTTTTTTTTCAGTGTAAAAAGACACAA
AACAAGACGAAGGTAAAGACGCTATCATAGCCTTGATCGACATTCGTGAT
CTTCGTAAAAGCTCAAGAAGTCAGTTGATCACGAAACCCTAAAAATCGAC
AAAGGTTTCGAGGATAGCCAAATTGCTAGCTGTTTATGAAATTAGATTTG
GGCATAAACTTATATATATATATATATAGCAGCTGTGTGTGGGCCTCTAG
TTCTCCTTCATCGGTCAACCATACATGTGAGAAAAATGTCAACCATAGCA
CTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGCTCTGA
ACCGCGGCAACAAACCATCGGGATCTGCAGAGGAAAGGCTCTCGATTTAG
TATCATCGCTCAAGGCATCGAAGATCGTCGTCATGCCCAATGCAGAGGTG
GATTTCGAGGGACCGTTGGGCCAAGTCGTGACAGAGGCTAACACCCAAGA
GGAGTTTCTGCAGCTGGCGAGAGGAAATGATGTCGAGGTAGTCTTGGTGA
GAGCCACCGAGGAAGTCGATGTGTGGCCCTGAGGACGAGAGTCGTGGCTA
TTCTCTGTCTCGAGTTTCTGGTGGATGGTTTTCCGAATAGGCACTACCTG
TCTTTTTGTGTGTGTTAATCAAAACATGAATAGGGTTTGTAACGATTTCC
TGTCATAGGAATAATGACCTCTTCGACTCCGAAGAGAAGTCAGAACTTTG
GGAGACGGGTGGGCATGGATATTGTGTACTGGGCACAAGTTTTCTAACCC
ATGATTGTGTCGGTGTATTTCGGGTCGGGGAGAGCTTCTCGTGCCATTCT
TGTTGTCCTGTTGTTGGTACCGGTTCTATATATGTTTGTATGGATGTGAC
ATTTGAACGAGCTTTTCGAGGGGAGAGTATTTTATGTCGAGTTATGAATC
AGAAAGCAACGTAATAGTTACTTTAAGAAGAAAAGATGCGTTGAAGGCCG
ATCTGCTTTTGAATTGCATGTAAACCTTGGACGTTTCAAGTGTAAGATTT
TTTATTAATAGTAGTTAATTCGACCAATCAGATTTGTCCCTTGAGTACAA
GGAATTAATGAGATGACTTGGGGCGTCGTTTATTTATTTTCTTGTTTCTG
TGGAGTATGCATGATGGATGAAGAGATGGTCAATTTTGCATTTACGAGGA
AGGTGGGGAAGGTTGTTACCGAGGTGACATCGGCAACAAACTGTTTTCAA
TACTGTACTATTGTGCGGACATCCAAAACAGGGTCAAGGGAAAGCTTTTT
TCTTTTTTTTTAACCCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20920:66..2584-

>mRNA_H-paniculata_contig20920.5452.1 ID=mRNA_H-paniculata_contig20920.5452.1|Name=mRNA_H-paniculata_contig20920.5452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig20920:66..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACCCTAGGTACCCTCCCCCTAGGTACCCCCCCTCCTGTCCCTCA
CTTCTCTCACTTATGTTTCCCGCGCTGTTGTGATTATCTAGCACCGGCTG
GAGGATCGTTATACTTCGAAGCGCATCTGATGTTTGACAAATCGGAGCTG
TCCAAGCTGCAAGCAGACGTGGTTATAGCTCCCGTCGTAGAGCAGAAGCT
AGCGGCCTACACCCTTGTAGCCGGGGGATGAATACCCTAGGTACCCTCCC
CCTAGGTACCCCCCCTCCTGTCCCTCACTTCTCTCACTTATGTTTCCCGC
GCTGTTGTGATTATCTAGCACCGGCTGGAGGATCGTTATACTTCGAAGCG
CATCTGATGTTTGACAAATCGGAGCTGTCCAAGCTGCAAGCAGACGTGGT
TATAGCTCCCGTCGTAGAGCAGAAGCTAGCGGCCTACACCCTTGTAGCCG
GGGGAGGAAAGGCTCTCGATTTAGTATCATCGCTCAAGGCATCGAAGATC
GTCGTCATGCCCAATGCAGAGGTGGATTTCGAGGGACCGTTGGGCCAAGT
CGTGACAGAGGCTAACACCCAAGAGGAGTTTCTGCAGCTGGCGAGAGGAA
ATGATGTCGAGGTAGTCTTGGTGAGAGCCACCGAGGAAGTCGATGTGTGG
CCCTGAAGGAAAGGCTCTCGATTTAGTATCATCGCTCAAGGCATCGAAGA
TCGTCGTCATGCCCAATGCAGAGGTGGATTTCGAGGGACCGTTGGGCCAA
GTCGTGACAGAGGCTAACACCCAAGAGGAGTTTCTGCAGCTGGCGAGAGG
AAATGATGTCGAGGTAGTCTTGGTGAGAGCCACCGAGGAAGTCGATGTGT
GGCCCTGA
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