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Homology
BLAST of mRNA_H-paniculata_contig2091.5448.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI) HSP 1 Score: 241 bits (614), Expect = 3.640e-70 Identity = 145/231 (62.77%), Postives = 164/231 (71.00%), Query Frame = 2
Query: 5 VWCTLETVGKIIPVFALLGKGFSCVIQACGGKSRNKAVIVPGKPIRSKWTSEVAAYTDVYFQYIPAHGDLTTAEKLEGWMVSHLADKSVVKKKGWDMDEE-APPADRDAKFSWEVIRDNSVFTYRIDLVPGYSEIMGALKEEERLYKQDLAADSDXXXXXXXXXXXXXXXXXXXXXXGENSAVQPNKSAKAKKKE-VAYNPFDDFESGANDETTQGGNGEYXXXXXFMDGV 691
VWC LE + P+F +LGKGF V+ +C GK R V+ PGK IRS+WTSEVAAYTDVY+QYIP +GDLTTAEKLEGWMVSHLADKSVVKKKGWDMDEE APP DAKFSWEVIRDNS+FTYRIDLVP Y+E+M AL+EEERLYK+DL A+SD XXXXXXXXXXXXXXXX A+NPFDD +G D G + Y FMDG+
Sbjct: 574 VWCVLEFLNGYFPLFVILGKGFRFVLGSCTGKKRTLEVMRPGKKIRSRWTSEVAAYTDVYYQYIPKNGDLTTAEKLEGWMVSHLADKSVVKKKGWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAEVMAALQEEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAFNPFDDAGNGGADGDDAGDDDGYNPFADFMDGM 804
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 135.2 |
| Seed ortholog evalue | 3e-29 |
| Seed eggNOG ortholog | 2880.D7G1M6 |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K03015 |
| KEGG Reaction | R00435,R00441,R00442,R00443 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169 |
| KEGG Module | M00180 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 28SCF@1,2QZ1Z@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400 |
| Exons | 5 |
| Model size | 871 |
| Cds size | 528 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2091.5448.1 >prot_H-paniculata_contig2091.5448.1 ID=prot_H-paniculata_contig2091.5448.1|Name=mRNA_H-paniculata_contig2091.5448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MVSHLADKSVVKKKGWDMDEEAPPADRDAKFSWEVIRDNSVFTYRIDLVP
GYSEIMGALKEEERLYKQDLAADSDDSDQESSGSGGSRDNSEEDDDDGEN
SAVQPNKSAKAKKKEVAYNPFDDFESGANDETTQGGNGEYNPFADFMDGV
GSLGINVSYNPVDCTRSNDRPCRKK* back to topmRNA from alignment at H-paniculata_contig2091:13493..17585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2091.5448.1 ID=mRNA_H-paniculata_contig2091.5448.1|Name=mRNA_H-paniculata_contig2091.5448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4093bp|location=Sequence derived from alignment at H-paniculata_contig2091:13493..17585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTGTGGTGCACTTTGGAAACCGTGGGCAAGATTATACCCGTTTTCG
CGTTACTGGGCAAGGGTTTCTCCTGCGTGATACAGGCGTGCGGGGGCAAG
AGCAGGAACAAGGCAGTCATTGTACCAGGAAAGCCGATCCGAAGCAAGTA
AGGGAACACCAAACAAAGTGAAACCATGTTCATCTCGTGTTTACTTGTGC
TGTCACATTCTGATGACTCACTCTCATCTACATTATTTTACTGGAAATTA
CTAACTCGATATGCTCATAAATAATCCAACGCAGGTGTGAATCTCAAGAG
AGAACATGAGATCGAACAAAGAGCTTGACGAAGAAGAGAGTGACGCACCC
CCCACCAGTACCGAATCCACCTGATCCTCCACCCATTTTCAATACATCAA
AAACTGAAGAAAGCAAAATGCTCATATCTGTCCAAATTTGAAATGCACTA
GCACAAGTAGGAGTGGGTACATGGTCTGAGCCCGCCTTACGTTTGTTTCT
TTATTTTGTCATCTGTTCGAGACGAGTATGTGCATATACACGAATCCGTC
AACATGTAGTCGTCGAAGCCTCAGCCGTCTATCCTGTAAATCGATTTTCA
CTCACGATTTAGCACCCCTCCGCGCGCTACTTTGTTAATAGATGGACATC
TGAGGTGGCCGCCTACACGGACGTGTACTTCCAGTACATACCCGCACATG
GTGATCTGACAACGGCGGAGAAGCTGGAAGGGTGGATGGTCAGTCACCTC
GCGGACAAATCGGTCGTCAAGAAGAAGGTATGTAGGCCATGGAAAAGGTA
CATGGGACAACATGAAGGTACAGGAGACAAGAGGGCATATACTTGTACAT
AGATCTACTGCATGGCATGGTCGAACAAAGATATTGTTCGTAAACGTACA
CGCGGATAAAAAGGTACATGTGTGAAATAAAGTAAGAGGGCAAGAAAAAG
GTACCTGAGGCAATATAAATACATACAAGACCACACAAGAAGAAATGTTG
GTACAGAGATCTAGTGCATGCCATTATCGGACAGAGATATTGTTCGCAAA
GTAAACGCCAATACGGTTACGGTTTCATCTCTTGGGGGTAACCTACTGTA
GAAATATTCTCTGTATCATAACAGTCGCCCTCGTGAGTGTACGGAATATA
CGTTGCAGCGCTCTCTGGTATATTATTCCGAGGGAGCATCATATTTTCTT
TTCTGCTTACTACCAGTGTTTGATCCATAGGAGTGCGCATTGTTTCCTAG
AGTTCTAGAGCTCAATACACCCAAATATCCTCGAGATTGTAACACACTGC
GAAGCCAGTGAACGAAGTAGAAAACATTAGAGCTGCCACTCACGGTATTT
GGTGCGAACAACTTGGTTTATGCTGGATTGCTCATTCTCCATTTAATAAT
TATGACTGACCTCAGCTCTTTTGTTGAAATAACGGTGCTCGTACGCGTGG
ACCAAAACGAAATGTTTCAAGGGGTCCCATGTTCATGAAATACTCCGCAA
TCAAGACTTGCTTTCCCCGTGAATCCCCGCCGTTGTTTCATCACACACCC
GTATTTACATATGTGCATCTTGCTCAAAGAATGGTACAGTACATTATATC
GTTGAAACGATTGCAAACATTTATTTTGCGGCGTATCGTACATAAATCTC
GTCATACCACGTATCCTGCTAAAAATATAGGACGAATTATTGTGAAATAT
TGATCTTGTTAAGGATACATAACTGAATGTCATCGAAATATGCGTGCTTG
CTGCTGCAGGGATGGGACATGGACGAGGAAGCTCCGCCGGCAGATCGAGA
CGCCAAATTCTCTTGGGAAGTGATCAGGGACAACTCTGTCTTCACCTACC
GCATCGACCTCGTGCCGGGCTATTCTGAGATCATGGGAGCGTTGAAGGCA
AGTTGCCCCCTACTACTCAGAGCTATTACAAACCTTCAGCCGCAAACCCC
ACGCAGTATCAATATATGATGGAGAACACGGTAGCCCCTCCAACATTTGG
TGTAAAGTGTTGTGATGAAACGCAAAGCATCTCAAGTCTTCCTCATCCGA
CTCTCCCCGATGCTGTAGATAGCCCAAAACCTAGTCTATTATTGCAAATG
CATGCTGTCTCGGTCCTACACTCGACAAGCTCTCAGAGAGAGCGCTTTCT
TTCGGCGACACAAGGGGGGGGGCGCATGTGGAAAAGTGTAAGCGAACTTG
CATCAAATAGCTGCTCTTCGAGAACGCGGATATATTTCTATTAATGCATG
TCTTGCTCTCGAGTTCTGGTGTTATATACTGACACGACGTCTTACTCGTT
CAGATTTCGAATTTACCTCGTATGCTGGATAATTCAAAAGTAAACTACAA
AAATATAGTTGACCAGGATGATGTGTCGTACACACATCGCTGCTAGGGGG
TGCAAGAGCATCTCCAAGCATGAGGGCTGCAGGGCGAGTGGTCATAGCTA
ACCTTCGACCTAAAATGTTGAGCTGAGTGGCGGACGCTTCGAATCGCGTT
ATGCTGTTGCCCTCAGCTTTAATCAAGGGAGGGCAAGAATACCACTGTAG
TAGATAGGTTAGGTTTAGCGATTCCGTACACTGTTCCCCTCGTTGCTACT
TTAATCAGTGCGTCAATACGTTTTAGGGCACCCACTCGCCCCCGCCTCCT
CCGGCAAAGAGTGCGCCCGTTTCTACTTTGTTACCGGCTCCCCATTTTTC
CTCGGTTCCCTATTGTGCGTGGATCTTTTGGTACAGGAAGAGGAGCGCCT
GTATAAGCAAGATCTTGCTGCTGACTCCGATGATAGCGACCAAGAATCTT
CAGGAAGCGGGGGCAGTCGCGATAATTCCGTGAGTGCTCGTACGACAGGA
TTGCAGTGTGGTCTAGCGCGTGTGCCTTTTTTTGATTCATTATTAGCACC
CTCCTGACATATCTATACTTCGCTATTTAGCGTTGGGAACAAGGATGTTG
AAAACCTTAGTGTCTGATGTAAAATATTCGGGCACGATTATTACAAAAGC
GTACTCGTTGTCATAGAAAGTACAAGCGACATAGATATGAAAGCAGCAGA
AAAAGGATCATGGAGAGTATGACATAGAGTGAGACTTTGATCTCGAAGTC
CCCAACTAGCGGTAAGGGACTTGACTCTCTACAAGGGCCGAGGCGTTTAC
ACAAAGCCACGATGTTATATTGTCAAGAAACACACTAAACGGATGCAAGT
TTGAACGTTAGACAGTGCATCGATATCCACACAGAAGAACAATCACATTT
GTTTGTGATGGTCACAGTAACTATATCGTTCGCAAGATACTTCCTCCAGA
AAAATATCGCTTACAGGTCGAACGAGGGCCGCGTGTGCTCAAGTTCGTTC
TTCCTCAGAATTATGGATTTGCCTTCAACAGCAATACCTCGTCACCAATA
TATATATATATATATATGTGTCCATAATATCAAGACAGTCCAATCGCTCT
TGAAAACCTGCTGCCTCTCACGAGTTTGAATTGATTTTCTAGCGGAGCAG
AAATGGCTAGAAAATCAAAGCCTAGCGAAACGTTTGTCACGTATCGCGGG
ACATAAACACCACTTGGCCTTACATAGTATAAGTTCTTCTAAAACGTTCA
CACCGCGAATGGGATATGCTACGTATTCTCGTCCAAACGTTGAACGTTTC
CTCAAACACAAGCGACGATTAGAGCAGGGTTACAATGTTTTGTGCAACGC
CGAGTTTCCATTTCCGTGGAAAAACCAAACACACAGGAGGAGGATGATGA
TGACGGAGAGAACTCTGCCGTTCAGCCGAACAAGTCTGCAAAAGCAAAAA
AGAAAGAGGTTGCCTACAACCCGTTCGACGATTTTGAAAGCGGTGCTAAC
GATGAAACGACACAAGGAGGCAACGGGGAGTACAACCCCTTCGCGGACTT
CATGGACGGGGTAGGAAGCCTTGGAATAAATGTCTCTTATAATCCTGTAG
ATTGTACACGATCCAACGATCGACCTTGCAGAAAGAAATGAATTCTATGT
TTAGCCTGCAATACAAATGTCTCTACATTACTTTGTTTTTCACGAAAAAC
CCATAAGGAGCAGTGTGTTGTTCAATTGCACCACAAGAGGATA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2091:13493..17585+ >mRNA_H-paniculata_contig2091.5448.1 ID=mRNA_H-paniculata_contig2091.5448.1|Name=mRNA_H-paniculata_contig2091.5448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig2091:13493..17585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAGTCACCTCGCGGACAAATCGGTCGTCAAGAAGAAGATGGTCAG
TCACCTCGCGGACAAATCGGTCGTCAAGAAGAAGGGATGGGACATGGACG
AGGAAGCTCCGCCGGCAGATCGAGACGCCAAATTCTCTTGGGAAGTGATC
AGGGACAACTCTGTCTTCACCTACCGCATCGACCTCGTGCCGGGCTATTC
TGAGATCATGGGAGCGTTGAAGGGATGGGACATGGACGAGGAAGCTCCGC
CGGCAGATCGAGACGCCAAATTCTCTTGGGAAGTGATCAGGGACAACTCT
GTCTTCACCTACCGCATCGACCTCGTGCCGGGCTATTCTGAGATCATGGG
AGCGTTGAAGGAAGAGGAGCGCCTGTATAAGCAAGATCTTGCTGCTGACT
CCGATGATAGCGACCAAGAATCTTCAGGAAGCGGGGGCAGTCGCGATAAT
TCCGAAGAGGAGCGCCTGTATAAGCAAGATCTTGCTGCTGACTCCGATGA
TAGCGACCAAGAATCTTCAGGAAGCGGGGGCAGTCGCGATAATTCCGAGG
AGGATGATGATGACGGAGAGAACTCTGCCGTTCAGCCGAACAAGTCTGCA
AAAGCAAAAAAGAAAGAGGTTGCCTACAACCCGTTCGACGATTTTGAAAG
CGGTGCTAACGATGAAACGACACAAGGAGGCAACGGGGAGTACAACCCCT
TCGCGGACTTCATGGACGGGGTAGGAAGCCTTGGAATAAATGTCTCTTAT
AATCCTGTAGATTGTACACGATCCAACGATCGACCTTGCAGAAAGAAATG
AGAGGAGGATGATGATGACGGAGAGAACTCTGCCGTTCAGCCGAACAAGT
CTGCAAAAGCAAAAAAGAAAGAGGTTGCCTACAACCCGTTCGACGATTTT
GAAAGCGGTGCTAACGATGAAACGACACAAGGAGGCAACGGGGAGTACAA
CCCCTTCGCGGACTTCATGGACGGGGTAGGAAGCCTTGGAATAAATGTCT
CTTATAATCCTGTAGATTGTACACGATCCAACGATCGACCTTGCAGAAAG
AAATGA back to top
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