mRNA_H-paniculata_contig20909.5447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20909.5447.1
Unique NamemRNA_H-paniculata_contig20909.5447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20909.5447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20909contigH-paniculata_contig20909:95..676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue6.4e-33
Seed eggNOG ortholog2880.D8LL51
Preferred nametop3
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031323,GO:0031422,GO:0032200,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.4921312-CDS-H-paniculata_contig20909:94..6761622929549.4921312-CDS-H-paniculata_contig20909:94..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20909 95..676 -
1691480909.4725454-CDS-H-paniculata_contig20909:94..6761691480909.4725454-CDS-H-paniculata_contig20909:94..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20909 95..676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20909.5447.1prot_H-paniculata_contig20909.5447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20909 95..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20909.5447.1

>prot_H-paniculata_contig20909.5447.1 ID=prot_H-paniculata_contig20909.5447.1|Name=mRNA_H-paniculata_contig20909.5447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MAVDGLPLIGCVFKIGSELVKRCELVEQCHVEAGRIALRTLRILCSLESA
WGEVSSNAGLAASLIELKLALENANDIVERCKKPKGIRAATLALMRVTTL
KNGLIKLDTELERIIQDLNVPLLVDMRIAIRKLEMQGERDKSASQSAVAQ
SMRDAICQELDVRSVSGVAIRDVIKTNLSKLEEPDSSILGEAFG
back to top

mRNA from alignment at H-paniculata_contig20909:95..676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20909.5447.1 ID=mRNA_H-paniculata_contig20909.5447.1|Name=mRNA_H-paniculata_contig20909.5447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig20909:95..676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGGATGGACTGCCGCTCATTGGATGCGTCTTCAAAATTGGGTC
TGAGCTTGTTAAGCGGTGCGAGTTGGTTGAGCAGTGCCATGTCGAGGCGG
GCCGCATTGCTCTGCGAACACTCCGCATACTTTGCTCTTTGGAGAGCGCT
TGGGGGGAAGTATCGTCCAACGCCGGTCTCGCGGCCAGCTTGATTGAGCT
GAAACTGGCCTTGGAAAATGCGAACGACATTGTCGAACGCTGCAAGAAAC
CAAAGGGAATCAGAGCTGCAACGTTAGCTCTGATGCGAGTAACCACATTA
AAAAATGGCCTGATCAAGCTCGACACTGAGTTGGAGCGAATTATACAAGA
CCTGAATGTGCCACTGTTAGTCGATATGAGGATTGCCATTCGAAAGTTGG
AGATGCAGGGCGAACGCGACAAGAGCGCCAGTCAATCGGCTGTCGCGCAA
TCTATGCGAGATGCTATTTGCCAAGAGCTGGATGTTCGAAGCGTGAGCGG
GGTAGCAATCCGTGATGTAATAAAGACCAACCTTTCTAAGCTCGAGGAAC
CAGATTCTTCTATTCTTGGTGAAGCTTTTGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20909:95..676-

>mRNA_H-paniculata_contig20909.5447.1 ID=mRNA_H-paniculata_contig20909.5447.1|Name=mRNA_H-paniculata_contig20909.5447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig20909:95..676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGGATGGACTGCCGCTCATTGGATGCGTCTTCAAAATTGGGTC
TGAGCTTGTTAAGCGGTGCGAGTTGGTTGAGCAGTGCCATGTCGAGGCGG
GCCGCATTGCTCTGCGAACACTCCGCATACTTTGCTCTTTGGAGAGCGCT
TGGGGGGAAGTATCGTCCAACGCCGGTCTCGCGGCCAGCTTGATTGAGCT
GAAACTGGCCTTGGAAAATGCGAACGACATTGTCGAACGCTGCAAGAAAC
CAAAGGGAATCAGAGCTGCAACGTTAGCTCTGATGCGAGTAACCACATTA
AAAAATGGCCTGATCAAGCTCGACACTGAGTTGGAGCGAATTATACAAGA
CCTGAATGTGCCACTGTTAGTCGATATGAGGATTGCCATTCGAAAGTTGG
AGATGCAGGGCGAACGCGACAAGAGCGCCAGTCAATCGGCTGTCGCGCAA
TCTATGCGAGATGCTATTTGCCAAGAGCTGGATGTTCGAAGCGTGAGCGG
GGTAGCAATCCGTGATGTAATAAAGACCAACCTTTCTAAGCTCGAGGAAC
CAGATTCTTCTATTCTTGGTGAAGCTTTTGGCATGGCTGTGGATGGACTG
CCGCTCATTGGATGCGTCTTCAAAATTGGGTCTGAGCTTGTTAAGCGGTG
CGAGTTGGTTGAGCAGTGCCATGTCGAGGCGGGCCGCATTGCTCTGCGAA
CACTCCGCATACTTTGCTCTTTGGAGAGCGCTTGGGGGGAAGTATCGTCC
AACGCCGGTCTCGCGGCCAGCTTGATTGAGCTGAAACTGGCCTTGGAAAA
TGCGAACGACATTGTCGAACGCTGCAAGAAACCAAAGGGAATCAGAGCTG
CAACGTTAGCTCTGATGCGAGTAACCACATTAAAAAATGGCCTGATCAAG
CTCGACACTGAGTTGGAGCGAATTATACAAGACCTGAATGTGCCACTGTT
AGTCGATATGAGGATTGCCATTCGAAAGTTGGAGATGCAGGGCGAACGCG
ACAAGAGCGCCAGTCAATCGGCTGTCGCGCAATCTATGCGAGATGCTATT
TGCCAAGAGCTGGATGTTCGAAGCGTGAGCGGGGTAGCAATCCGTGATGT
AATAAAGACCAACCTTTCTAAGCTCGAGGAACCAGATTCTTCTATTCTTG
GTGAAGCTTTTGGC
back to top