mRNA_H-paniculata_contig20899.5441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20899.5441.1
Unique NamemRNA_H-paniculata_contig20899.5441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20899.5441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20899contigH-paniculata_contig20899:3160..4278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1119
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20899.5441.1prot_H-paniculata_contig20899.5441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20899 3417..3980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.0983348-UTR-H-paniculata_contig20899:3159..34161622929548.0983348-UTR-H-paniculata_contig20899:3159..3416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 3160..3416 +
1691480908.7956688-UTR-H-paniculata_contig20899:3159..34161691480908.7956688-UTR-H-paniculata_contig20899:3159..3416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 3160..3416 +
1622929548.2040515-UTR-H-paniculata_contig20899:3980..42781622929548.2040515-UTR-H-paniculata_contig20899:3980..4278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 3981..4278 +
1691480908.814906-UTR-H-paniculata_contig20899:3980..42781691480908.814906-UTR-H-paniculata_contig20899:3980..4278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 3981..4278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.1812944-CDS-H-paniculata_contig20899:3416..39801622929548.1812944-CDS-H-paniculata_contig20899:3416..3980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 3417..3980 +
1691480908.8045597-CDS-H-paniculata_contig20899:3416..39801691480908.8045597-CDS-H-paniculata_contig20899:3416..3980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 3417..3980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20899.5441.1

>prot_H-paniculata_contig20899.5441.1 ID=prot_H-paniculata_contig20899.5441.1|Name=mRNA_H-paniculata_contig20899.5441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MYLPTFSTNTSALYPPFVAVSQGECCKPKLHSKPSGETMNVTHGSGNRGG
REIRLVGVRGGNVRKVIVNFATVTSSQSLRPQNCLSPSTYMRSRPITPLN
LNPMHSYVRIGTIATCSDFLQIQSRTSEAFPMLKDCLKVSSRNKTGEGKG
GERTKGGHQLRSFTITATPRPKLFIAFQIYASSFPSP*
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mRNA from alignment at H-paniculata_contig20899:3160..4278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20899.5441.1 ID=mRNA_H-paniculata_contig20899.5441.1|Name=mRNA_H-paniculata_contig20899.5441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-paniculata_contig20899:3160..4278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGTAGTGGCAGCGGCCAAGGCGCCAAAACACCTCAAGAGTGGCAGT
CAAAATTACAGTTTGTTTGTTTTTTCGCACAACAGGTTGAGAGTTTTATC
CACAGAAACAGAAGGGTGTCCTACCTGCCACTGAGGTACACACAATTATT
ACCGTGATCCACCCCCGCTCACAAAGAAGAACTTAAGGAGCAGGCCCACC
CTGTGCGACTCTCATGAAAAAACGACATCGACAACACAGTCTCAGGAGTA
GTTACCTATGTACCTACCTACTTTTAGCACAAATACAAGCGCTCTCTACC
CGCCTTTCGTCGCAGTTTCGCAAGGGGAGTGCTGTAAGCCAAAGCTGCAT
TCTAAGCCCTCGGGGGAGACTATGAATGTAACGCACGGGTCGGGAAACCG
GGGAGGAAGGGAGATAAGGTTGGTTGGGGTACGTGGGGGGAACGTACGCA
AGGTGATCGTCAACTTTGCTACTGTAACATCATCACAGTCTCTTCGTCCT
CAAAACTGCTTGTCGCCTTCCACGTACATGCGTTCTCGTCCTATTACCCC
TTTAAACCTTAACCCCATGCACAGCTACGTTAGAATCGGAACAATTGCGA
CATGCAGCGACTTTCTACAAATCCAATCACGTACGTCCGAAGCATTCCCT
ATGCTAAAAGATTGTCTTAAAGTAAGTTCAAGAAACAAAACTGGAGAGGG
AAAAGGAGGAGAGCGCACGAAAGGCGGTCATCAACTCCGTTCGTTTACTA
TCACAGCCACTCCGCGCCCGAAGCTATTCATCGCCTTTCAGATATATGCA
TCCTCGTTCCCCTCGCCCTAGTTCTCGAATCGCTAATCGCTATCGCTTCC
CCATCCATGTTAAGTGCCGTGGCCTTCGCTCATCACCATCTGATAAAGTG
GCTTCTTATACGCGCCCTGCCCGACAGACGACTTGAATTTTCTCACGTAG
TGGGACCAGCATTCCTTGTTATCCCTTATCAAAGGGCCGTGCGTCACGTT
ACTCTGTCAAATGTACCTAGTCATAACTCGGTGGATTATACACTCTCCAG
AGCACAGGTGATCCACTGCTTGGCAATACCGTATTCTCTTCTCGGGCACT
TTCGTCAACCCGATATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig20899:3160..4278+

>mRNA_H-paniculata_contig20899.5441.1 ID=mRNA_H-paniculata_contig20899.5441.1|Name=mRNA_H-paniculata_contig20899.5441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig20899:3160..4278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCTACCTACTTTTAGCACAAATACAAGCGCTCTCTACCCGCCTTT
CGTCGCAGTTTCGCAAGGGGAGTGCTGTAAGCCAAAGCTGCATTCTAAGC
CCTCGGGGGAGACTATGAATGTAACGCACGGGTCGGGAAACCGGGGAGGA
AGGGAGATAAGGTTGGTTGGGGTACGTGGGGGGAACGTACGCAAGGTGAT
CGTCAACTTTGCTACTGTAACATCATCACAGTCTCTTCGTCCTCAAAACT
GCTTGTCGCCTTCCACGTACATGCGTTCTCGTCCTATTACCCCTTTAAAC
CTTAACCCCATGCACAGCTACGTTAGAATCGGAACAATTGCGACATGCAG
CGACTTTCTACAAATCCAATCACGTACGTCCGAAGCATTCCCTATGCTAA
AAGATTGTCTTAAAGTAAGTTCAAGAAACAAAACTGGAGAGGGAAAAGGA
GGAGAGCGCACGAAAGGCGGTCATCAACTCCGTTCGTTTACTATCACAGC
CACTCCGCGCCCGAAGCTATTCATCGCCTTTCAGATATATGCATCCTCGT
TCCCCTCGCCCTAGATGTACCTACCTACTTTTAGCACAAATACAAGCGCT
CTCTACCCGCCTTTCGTCGCAGTTTCGCAAGGGGAGTGCTGTAAGCCAAA
GCTGCATTCTAAGCCCTCGGGGGAGACTATGAATGTAACGCACGGGTCGG
GAAACCGGGGAGGAAGGGAGATAAGGTTGGTTGGGGTACGTGGGGGGAAC
GTACGCAAGGTGATCGTCAACTTTGCTACTGTAACATCATCACAGTCTCT
TCGTCCTCAAAACTGCTTGTCGCCTTCCACGTACATGCGTTCTCGTCCTA
TTACCCCTTTAAACCTTAACCCCATGCACAGCTACGTTAGAATCGGAACA
ATTGCGACATGCAGCGACTTTCTACAAATCCAATCACGTACGTCCGAAGC
ATTCCCTATGCTAAAAGATTGTCTTAAAGTAAGTTCAAGAAACAAAACTG
GAGAGGGAAAAGGAGGAGAGCGCACGAAAGGCGGTCATCAACTCCGTTCG
TTTACTATCACAGCCACTCCGCGCCCGAAGCTATTCATCGCCTTTCAGAT
ATATGCATCCTCGTTCCCCTCGCCCTAG
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