mRNA_H-paniculata_contig20878.5436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI) HSP 1 Score: 204 bits (520), Expect = 7.490e-59 Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKRDTPFLND 342
DGFSA+EIRAAFLRFFVS+FRGYLAHVVMPT+SSPYPEKLF KEAFL+S G+LPESSH FM A LDSQMFERFLEERTA P QPEVRFFDESIAAKLNRSKTNPIK+DTPFLND
Sbjct: 665 DGFSASEIRAAFLRFFVSIFRGYLAHVVMPTSSSPYPEKLFAKEAFLKSCGYLPESSHAFMNAFLDSQMFERFLEERTANPTQPEVRFFDESIAAKLNRSKTNPIKKDTPFLND 778
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.730e-31 Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1
Query: 4 GFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKRDTPFLND 342
GF+ EIRAAFLRFFVS+FR Y ++V+PT P+P++LF +EAFL+ +P + FM+ L SQMFERFLEE+ + P QPE+RFF+ESI KLNR K IK+DTPFLN+
Sbjct: 974 GFNVHEIRAAFLRFFVSIFRTYQDYLVVPTPQDPFPKELFDREAFLKE---MPAQAQEFMSVFLQSQMFERFLEEQLSHPDQPEIRFFEESIVQKLNRGK-KIIKKDTPFLNN 1082
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2HRL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HRL5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.960e-24 Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 4 GFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI----KRDTPFLND 342
GFS AEIR AFLRFFVS+F+ Y T +P ++ F +EAFL E S F++ V+ +QMFERF+EER + P QPEV FFDE+I AK NRSK + ++DTPFL D
Sbjct: 71 GFSTAEIRNAFLRFFVSIFKNY------ETFLAPGGDEPFRREAFLDDL-KFSEDSREFVSQVISTQMFERFVEERISSPDQPEVLFFDETIVAKNNRSKKTALPGGKRKDTPFLAD 180
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A1E7FED1_9STRA (DENN-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FED1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.530e-18 Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSK---TNPIKRDTPFLND 342
+GFS + IR AFLRF V+ F Y ++ S LF +E F+ G S F+ +L++Q+F+RFLEER P PE+RFFDESI AK NRSK N K+ TPFLND
Sbjct: 765 EGFSVSNIRNAFLRFTVATFAEYQDSLL-----SGSKRDLFDREKFIDKGGSQGGGSKLFLENILNTQLFQRFLEERIENPNLPEIRFFDESIVAKRNRSKKAIANGGKKSTPFLND 876
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2A7N5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N5_TRICV) HSP 1 Score: 85.5 bits (210), Expect = 4.530e-17 Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLR---SSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIK----RDTPFLND 342
DGFSA E R AFLRFFVS+ + Y +P S F E F++ S G+ +M+ V+ SQMFERF+EER + P QPEV FFDESI AK NRS+ +K + TPFL+D
Sbjct: 48 DGFSATETRNAFLRFFVSLLQNY--EKFLPDGSMGE----FQHEEFVKDFTSDGNC----RVWMSKVVSSQMFERFIEERISDPDQPEVLFFDESIIAKNNRSRLRTVKGKGKKTTPFLSD 158
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A8J9T554_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T554_PHATR) HSP 1 Score: 83.6 bits (205), Expect = 2.150e-16 Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI--------KRDTPFLND 342
GF ++EIR AFLR FVS+F+ Y ++ + F EAF+ S + E S F+ V+ +Q F RFL+ER P PE+RFFDESI AK+NRSK KR+T FL D
Sbjct: 773 SGFDSSEIRNAFLRLFVSIFQSYRHYL---------DKNGFRSEAFIDSL-NCSERSSEFLHCVVKTQFFSRFLDERIQNPSDPEIRFFDESIIAKINRSKKQTFSKIGRGGGKRETSFLKD 884
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: B7FQ36_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ36_PHATC) HSP 1 Score: 83.6 bits (205), Expect = 2.210e-16 Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI--------KRDTPFLND 342
GF ++EIR AFLR FVS+F+ Y ++ + F EAF+ S + E S F+ V+ +Q F RFL+ER P PE+RFFDESI AK+NRSK KR+T FL D
Sbjct: 773 SGFDSSEIRNAFLRLFVSIFQSYRHYL---------DKNGFRSEAFIDSL-NCSERSSEFLHCVVKTQFFSRFLDERIQNPSDPEIRFFDESIIAKINRSKKQTFSKIGRGGGKRETSFLKD 884
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2Y961_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y961_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.100e-16 Identity = 50/122 (40.98%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNR-SKTNPIKR-------DTPFLND 342
GFS EIR AFL+FFV + + Y ++ T K F E FL S E S ++ V+++Q+FERF++ER P EV FFD SI AK N+ KT P K+ DT FL+D
Sbjct: 584 SGFSVDEIRTAFLKFFVGILKNYREYINEET-------KTFDSEMFLASKTTYSERSQAYLKGVMETQLFERFMQERIECPTDSEVMFFDTSIDAKQNKFQKTAPFKKFRPGGKKDTSFLDD 698
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A225WXZ4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXZ4_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15 Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKR-DTPFLND 342
D FS IR AFLRFFV++ + Y ++VV T+ +P P LF + FL+ + + S F++ ++ +QMF+RF+E+R PEV FFD+SI KLNRS + K+ D FL+D
Sbjct: 707 DNFSTEGIRKAFLRFFVTLLKKYASYVV--THGTPRPSALFDSKRFLQDNSDV--QSRPFISQLIATQMFDRFIEDRAFNQQLPEVLFFDQSINQKLNRSLSIGKKKYDCSFLDD 817
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A448Z0U8_9STRA (UDENN domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0U8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.050e-15 Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSH--GFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI----KRDTPFLND 342
+GFS A IR AFLRF V+ F Y ++ NS +LF +E F+ G + F+ VL +Q+F+RFLEER P PE+RFFDESIAAK NRSK + K+ TPFL+D
Sbjct: 853 EGFSVAGIRGAFLRFVVATFAHYQDSLL--ENSG---RRLFDEEKFV---GDVASKGRPMAFLRNVLKTQLFQRFLEERRENPNLPEIRFFDESIAAKRNRSKKASLAMKGKQPTPFLDD 964 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20878.5436.1 >prot_H-paniculata_contig20878.5436.1 ID=prot_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSback to top mRNA from alignment at H-paniculata_contig20878:296..953- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20878.5436.1 ID=mRNA_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at H-paniculata_contig20878:296..953- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20878:296..953- >mRNA_H-paniculata_contig20878.5436.1 ID=mRNA_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig20878:296..953- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |