mRNA_H-paniculata_contig20878.5436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20878.5436.1
Unique NamemRNA_H-paniculata_contig20878.5436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 7.490e-59
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKRDTPFLND 342
            DGFSA+EIRAAFLRFFVS+FRGYLAHVVMPT+SSPYPEKLF KEAFL+S G+LPESSH FM A LDSQMFERFLEERTA P QPEVRFFDESIAAKLNRSKTNPIK+DTPFLND
Sbjct:  665 DGFSASEIRAAFLRFFVSIFRGYLAHVVMPTSSSPYPEKLFAKEAFLKSCGYLPESSHAFMNAFLDSQMFERFLEERTANPTQPEVRFFDESIAAKLNRSKTNPIKKDTPFLND 778          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.730e-31
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    4 GFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKRDTPFLND 342
            GF+  EIRAAFLRFFVS+FR Y  ++V+PT   P+P++LF +EAFL+    +P  +  FM+  L SQMFERFLEE+ + P QPE+RFF+ESI  KLNR K   IK+DTPFLN+
Sbjct:  974 GFNVHEIRAAFLRFFVSIFRTYQDYLVVPTPQDPFPKELFDREAFLKE---MPAQAQEFMSVFLQSQMFERFLEEQLSHPDQPEIRFFEESIVQKLNRGK-KIIKKDTPFLNN 1082          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2HRL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HRL5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.960e-24
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    4 GFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI----KRDTPFLND 342
            GFS AEIR AFLRFFVS+F+ Y       T  +P  ++ F +EAFL       E S  F++ V+ +QMFERF+EER + P QPEV FFDE+I AK NRSK   +    ++DTPFL D
Sbjct:   71 GFSTAEIRNAFLRFFVSIFKNY------ETFLAPGGDEPFRREAFLDDL-KFSEDSREFVSQVISTQMFERFVEERISSPDQPEVLFFDETIVAKNNRSKKTALPGGKRKDTPFLAD 180          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A1E7FED1_9STRA (DENN-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FED1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.530e-18
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSK---TNPIKRDTPFLND 342
            +GFS + IR AFLRF V+ F  Y   ++     S     LF +E F+   G     S  F+  +L++Q+F+RFLEER   P  PE+RFFDESI AK NRSK    N  K+ TPFLND
Sbjct:  765 EGFSVSNIRNAFLRFTVATFAEYQDSLL-----SGSKRDLFDREKFIDKGGSQGGGSKLFLENILNTQLFQRFLEERIENPNLPEIRFFDESIVAKRNRSKKAIANGGKKSTPFLND 876          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2A7N5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N5_TRICV)

HSP 1 Score: 85.5 bits (210), Expect = 4.530e-17
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLR---SSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIK----RDTPFLND 342
            DGFSA E R AFLRFFVS+ + Y     +P  S       F  E F++   S G+       +M+ V+ SQMFERF+EER + P QPEV FFDESI AK NRS+   +K    + TPFL+D
Sbjct:   48 DGFSATETRNAFLRFFVSLLQNY--EKFLPDGSMGE----FQHEEFVKDFTSDGNC----RVWMSKVVSSQMFERFIEERISDPDQPEVLFFDESIIAKNNRSRLRTVKGKGKKTTPFLSD 158          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A8J9T554_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T554_PHATR)

HSP 1 Score: 83.6 bits (205), Expect = 2.150e-16
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI--------KRDTPFLND 342
             GF ++EIR AFLR FVS+F+ Y  ++          +  F  EAF+ S  +  E S  F+  V+ +Q F RFL+ER   P  PE+RFFDESI AK+NRSK            KR+T FL D
Sbjct:  773 SGFDSSEIRNAFLRLFVSIFQSYRHYL---------DKNGFRSEAFIDSL-NCSERSSEFLHCVVKTQFFSRFLDERIQNPSDPEIRFFDESIIAKINRSKKQTFSKIGRGGGKRETSFLKD 884          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: B7FQ36_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ36_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 2.210e-16
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI--------KRDTPFLND 342
             GF ++EIR AFLR FVS+F+ Y  ++          +  F  EAF+ S  +  E S  F+  V+ +Q F RFL+ER   P  PE+RFFDESI AK+NRSK            KR+T FL D
Sbjct:  773 SGFDSSEIRNAFLRLFVSIFQSYRHYL---------DKNGFRSEAFIDSL-NCSERSSEFLHCVVKTQFFSRFLDERIQNPSDPEIRFFDESIIAKINRSKKQTFSKIGRGGGKRETSFLKD 884          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A7S2Y961_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y961_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.100e-16
Identity = 50/122 (40.98%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNR-SKTNPIKR-------DTPFLND 342
             GFS  EIR AFL+FFV + + Y  ++   T       K F  E FL S     E S  ++  V+++Q+FERF++ER   P   EV FFD SI AK N+  KT P K+       DT FL+D
Sbjct:  584 SGFSVDEIRTAFLKFFVGILKNYREYINEET-------KTFDSEMFLASKTTYSERSQAYLKGVMETQLFERFMQERIECPTDSEVMFFDTSIDAKQNKFQKTAPFKKFRPGGKKDTSFLDD 698          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A225WXZ4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXZ4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPIKR-DTPFLND 342
            D FS   IR AFLRFFV++ + Y ++VV  T+ +P P  LF  + FL+ +  +   S  F++ ++ +QMF+RF+E+R      PEV FFD+SI  KLNRS +   K+ D  FL+D
Sbjct:  707 DNFSTEGIRKAFLRFFVTLLKKYASYVV--THGTPRPSALFDSKRFLQDNSDV--QSRPFISQLIATQMFDRFIEDRAFNQQLPEVLFFDQSINQKLNRSLSIGKKKYDCSFLDD 817          
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Match: A0A448Z0U8_9STRA (UDENN domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0U8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-15
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSSGHLPESSH--GFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRSKTNPI----KRDTPFLND 342
            +GFS A IR AFLRF V+ F  Y   ++   NS     +LF +E F+   G +        F+  VL +Q+F+RFLEER   P  PE+RFFDESIAAK NRSK   +    K+ TPFL+D
Sbjct:  853 EGFSVAGIRGAFLRFVVATFAHYQDSLL--ENSG---RRLFDEEKFV---GDVASKGRPMAFLRNVLKTQLFQRFLEERRENPNLPEIRFFDESIAAKRNRSKKASLAMKGKQPTPFLDD 964          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20878.5436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU92_ECTSI7.490e-5988.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKZ6_9STRA1.730e-3157.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HRL5_9STRA5.960e-2450.43Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A1E7FED1_9STRA1.530e-1846.15DENN-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2A7N5_TRICV4.530e-1747.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J9T554_PHATR2.150e-1642.62Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FQ36_PHATC2.210e-1642.62Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2Y961_9STRA4.100e-1640.98Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A225WXZ4_9STRA1.040e-1542.61Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A448Z0U8_9STRA1.050e-1545.83UDENN domain-containing protein n=1 Tax=Pseudo-nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20878contigH-paniculata_contig20878:296..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.5
Seed ortholog evalue2.6e-50
Seed eggNOG ortholog2880.D8LU92
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.4393106-CDS-H-paniculata_contig20878:295..4781622929547.4393106-CDS-H-paniculata_contig20878:295..478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20878 296..478 -
1691480908.4086194-CDS-H-paniculata_contig20878:295..4781691480908.4086194-CDS-H-paniculata_contig20878:295..478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20878 296..478 -
1622929547.4550493-CDS-H-paniculata_contig20878:794..9531622929547.4550493-CDS-H-paniculata_contig20878:794..953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20878 795..953 -
1691480908.4184937-CDS-H-paniculata_contig20878:794..9531691480908.4184937-CDS-H-paniculata_contig20878:794..953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20878 795..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20878.5436.1prot_H-paniculata_contig20878.5436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20878 296..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20878.5436.1

>prot_H-paniculata_contig20878.5436.1 ID=prot_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
DGFSAAEIRAAFLRFFVSVFRGYLAHVVMPTNSSPYPEKLFHKEAFLRSS
GHLPESSHGFMTAVLDSQMFERFLEERTAIPPQPEVRFFDESIAAKLNRS
KTNPIKRDTPFLND
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mRNA from alignment at H-paniculata_contig20878:296..953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20878.5436.1 ID=mRNA_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at H-paniculata_contig20878:296..953- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGATTTAGTGCGGCGGAAATCCGCGCGGCGTTCCTCAGGTTCTTCGT GTCTGTTTTCCGAGGGTATCTAGCGCACGTGGTGATGCCCACCAACAGCT CGCCCTATCCGGAGAAGCTGTTCCACAAGGAGGCGTTTCTTAGGAGTAGT GGGCACTTGGTGAGATAGATGTTTTGAAAGAGTGTTTTTTTGGGGGGGGG CAGGGCGGGGAGGGGCTGTTATTTGTATTAATAAATAAAGAGCTTCGACT TGACCAAATATATTTTGTGAAGATATTTGCAAACGTGTTTTTTTTTTGTT TTTTTTTCCATCACTCAATCAATATGACACCAAATCGTGTTTGTGTCATC TCACAAAACGTTTATTCTCTCTTGTGCATGTATCATGTATGATATATAAT ATATTCTATTATGTTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTA CCGCCTTTTATTGTGCTTTCACCAGCCGGAATCAAGTCATGGCTTCATGA CCGCCGTCTTGGATAGCCAGATGTTCGAGAGGTTTCTGGAGGAGCGTACG GCTATCCCTCCGCAGCCCGAGGTTCGCTTTTTCGATGAGAGCATCGCGGC AAAGCTCAACCGCAGCAAGACGAACCCAATCAAGCGGGATACGCCCTTCC TGAACGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20878:296..953-

>mRNA_H-paniculata_contig20878.5436.1 ID=mRNA_H-paniculata_contig20878.5436.1|Name=mRNA_H-paniculata_contig20878.5436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig20878:296..953- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGATTTAGTGCGGCGGAAATCCGCGCGGCGTTCCTCAGGTTCTTCGT
GTCTGTTTTCCGAGGGTATCTAGCGCACGTGGTGATGCCCACCAACAGCT
CGCCCTATCCGGAGAAGCTGTTCCACAAGGAGGCGTTTCTTAGGAGTAGT
GGGCACTTGGACGGATTTAGTGCGGCGGAAATCCGCGCGGCGTTCCTCAG
GTTCTTCGTGTCTGTTTTCCGAGGGTATCTAGCGCACGTGGTGATGCCCA
CCAACAGCTCGCCCTATCCGGAGAAGCTGTTCCACAAGGAGGCGTTTCTT
AGGAGTAGTGGGCACTTGCCGGAATCAAGTCATGGCTTCATGACCGCCGT
CTTGGATAGCCAGATGTTCGAGAGGTTTCTGGAGGAGCGTACGGCTATCC
CTCCGCAGCCCGAGGTTCGCTTTTTCGATGAGAGCATCGCGGCAAAGCTC
AACCGCAGCAAGACGAACCCAATCAAGCGGGATACGCCCTTCCTGAACGA
CCCGGAATCAAGTCATGGCTTCATGACCGCCGTCTTGGATAGCCAGATGT
TCGAGAGGTTTCTGGAGGAGCGTACGGCTATCCCTCCGCAGCCCGAGGTT
CGCTTTTTCGATGAGAGCATCGCGGCAAAGCTCAACCGCAGCAAGACGAA
CCCAATCAAGCGGGATACGCCCTTCCTGAACGAC
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