mRNA_H-paniculata_contig2087.5433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2087.5433.1
Unique NamemRNA_H-paniculata_contig2087.5433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2087.5433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2087contigH-paniculata_contig2087:2004..3141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size126
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2087.5433.1prot_H-paniculata_contig2087.5433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2087 2004..3083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.2145936-CDS-H-paniculata_contig2087:2003..21001622929547.2145936-CDS-H-paniculata_contig2087:2003..2100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 2004..2100 -
1691480908.3227353-CDS-H-paniculata_contig2087:2003..21001691480908.3227353-CDS-H-paniculata_contig2087:2003..2100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 2004..2100 -
1622929547.2344847-CDS-H-paniculata_contig2087:3054..30831622929547.2344847-CDS-H-paniculata_contig2087:3054..3083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 3055..3083 -
1691480908.3328538-CDS-H-paniculata_contig2087:3054..30831691480908.3328538-CDS-H-paniculata_contig2087:3054..3083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 3055..3083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.2509398-UTR-H-paniculata_contig2087:3083..31411622929547.2509398-UTR-H-paniculata_contig2087:3083..3141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2087 3084..3141 -
1691480908.345338-UTR-H-paniculata_contig2087:3083..31411691480908.345338-UTR-H-paniculata_contig2087:3083..3141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2087 3084..3141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2087.5433.1

>prot_H-paniculata_contig2087.5433.1 ID=prot_H-paniculata_contig2087.5433.1|Name=mRNA_H-paniculata_contig2087.5433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MRDYTRTYRTKTNPNDEMLSEEQHSDVLERFCADLWERLEIE
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mRNA from alignment at H-paniculata_contig2087:2004..3141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2087.5433.1 ID=mRNA_H-paniculata_contig2087.5433.1|Name=mRNA_H-paniculata_contig2087.5433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-paniculata_contig2087:2004..3141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTATTGTCAAATCCCCGGTTAACGTATCGAGGCTTCGAGGACATTGC
AGAAGGAGATGAGGGATTACACGAGGACTTACCGAACGTGAGTGGATGGG
ATGAGTTGTAGAATATCATGGAAGATTTTCGTCAGTGTAAAATGTAATGT
GAACGACGTATTCGGAACAAGGATAAATGAAGCGTCATGAAACTTCTTAC
GACACCGCTTGTAGCAAGAAGCGATATTTGAAAACATAATCTGAACCCAC
CCTGCAGCATACGCCATGATCCATCCACTATCACTGGCACAATGTGTTAA
CAACGACCAGGAAATCTGTTGTTGTACTCCGGTGCTGGTGCATTGCTGCT
GTGAGCGAGCACGCTGTGGCGCTGTCTGTTATGTAAGAAGGGACTATCTG
TACCACAAATGCTAATGTATCAGTTATGCTCCGTCACTCCAAAAACTCAA
ACGGTCCAAAATGCGCGTTGAATTATTGGTAAAAATAGAAGGCCCTGGGG
TTCGATTTTGGGCTCGTGCGATTAAAAAAATCGAAGGCAAAACCCCCCAC
AAGAACTGGTTTCGAGTATTAGATAATTAATTTTTTCAAAAATAAAATCA
AGCTGAGGAATCCAACTGCCACAAGAAACGTTTTCAACGCAGTCGGAAAA
TGCAACTTTTTCTTGACGCGCAAAGTGCTGCAACGCGTACCGCGTCAGCA
ATAAGACGTGGTAGGGTAGCACAGTCTGATCAGGTACGGTATTGGCCCCA
AAGAAACGCACAGCGTAGGATCCGGCGCGGTAGTACCGTCCGCGAAAAAA
TGTGCTAGTGTGTACCGCCGGGAAAAATTCCACGGCCAATACCGATCGTG
TTGCACAGTAGCTGCATACCGCACGAAATGAAGCCCCTTGATAAACGTCG
GTGTGACTGTAGAGTATGGACTCGTCGCGAGGTAGCAATCGCTACTCCAC
GGGAGAAATAGAGAGGGCAAGCGAGCAGCACGTAAACGACAATTTTCTCC
CTCGCTCTTTTGTCGATACCTTCAACGTATTCGTCCCACAGGAAGACAAA
CCCGAACGACGAGATGCTCTCCGAGGAACAGCACAGCGATGTTCTTGAAC
GCTTCTGCGCAGACCTGTGGGAGCGATTGGAGATCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2087:2004..3141-

>mRNA_H-paniculata_contig2087.5433.1 ID=mRNA_H-paniculata_contig2087.5433.1|Name=mRNA_H-paniculata_contig2087.5433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig2087:2004..3141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGATTACACGAGGACTTACCGAACATGAGGGATTACACGAGGACT
TACCGAACGAAGACAAACCCGAACGACGAGATGCTCTCCGAGGAACAGCA
CAGCGATGTTCTTGAACGCTTCTGCGCAGACCTGTGGGAGCGATTGGAGA
TCGAGGAAGACAAACCCGAACGACGAGATGCTCTCCGAGGAACAGCACAG
CGATGTTCTTGAACGCTTCTGCGCAGACCTGTGGGAGCGATTGGAGATCG
AG
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