mRNA_H-paniculata_contig20866.5430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20866.5430.1
Unique NamemRNA_H-paniculata_contig20866.5430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20866.5430.1 vs. uniprot
Match: D7FVH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.380e-48
Identity = 89/164 (54.27%), Postives = 116/164 (70.73%), Query Frame = 1 
Query:    1 RNSFGPSYVFANVRTSVGKMLANFLQE---------KMKGGGRKGDEAKADEEMVLTSAVVENGVSELGGFGGTVVLPKPGVGTSIGETLEAPEEPRGVFDAVENNQVAVTEYKMPPKEPHVCKMLPGVQLMERTLLPEDLAPRRAPRLNRHMSIAEMGENKFD 465
            RNSFGPSY+F NVRTS+GK ++ F++E         ++KG   KG E   D E  L + V E+G +E GGFGG + LP P + T++GETL+APE+PRG+F+ V NNQV +  Y MPPK  HVC+MLPGV  + +TLLP+DL  RR PRLNR+MSIAEMG  K++
Sbjct:    5 RNSFGPSYLFTNVRTSLGKAVSAFVKEGAGGKAGGVEVKGLDSKG-EGLEDGETRLCTEVQEDGSTEWGGFGGKLALPAPEISTAVGETLQAPEKPRGMFEDVANNQVVMAVYAMPPKGEHVCRMLPGVDALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYN 167
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BLAST of mRNA_H-paniculata_contig20866.5430.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 9.430e-46
Identity = 89/163 (54.60%), Postives = 120/163 (73.62%), Query Frame = 1 
Query:    1 RNSFGPSYVFANVRTSVGKMLANFLQEKMKG--GGR--KGDEAKADE----EMVLTSAVVENGVSELGGFGGTVVLPKPGVGTSIGETLEAPEEPRGVFDAVENNQVAVTEYKMPPKEPHVCKMLPGVQLMERTLLPEDLAPRRAPRLNRHMSIAEMGENKFD 465
            RNSFGPSY+FANVRT +GK ++ F++E   G  GG   KG ++KA+     E  L + V E+G +E GGFGG + +P P + T++G+TL+APE+PRG+F+ V NNQVA+  Y MPPK  HVC+MLPGV+ + +TLLP+DL  RR PRLNR+MSIAEMG  K++
Sbjct:  880 RNSFGPSYLFANVRTPLGKAVSAFVKEGAGGTAGGVEVKGLDSKAEGLEAGEARLCTEVQEDGSTEWGGFGGKLAIPNPEISTAVGDTLQAPEKPRGMFEDVANNQVAMAVYAMPPKGEHVCRMLPGVEALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYN 1042
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BLAST of mRNA_H-paniculata_contig20866.5430.1 vs. uniprot
Match: A0A835YKU1_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.070e-25
Identity = 70/156 (44.87%), Postives = 86/156 (55.13%), Query Frame = 1 
Query:    1 RNSFGPSYVFANVRTSVGKMLANFLQEKMKGGGRK--GDEAKADEEMVLTSAVVENGVSELGGFGGTVVLPKPGVGTS----IGETLEAPEEPRGVFDAVENNQVAVTEYKMPPKEPHVCKMLPGVQLMERTLLPEDLAPRRAPRLNRHMSIAEMG 450
            RNSFGPSY+F +  + + + +    Q    G G+K  GD  +A               SE  G+ GTV   KP  G      +G+ L APE P G  + V+NNQV   EY+MPP+ PHVC MLPGV      L PEDL PRR PRLNR MSIAE+G
Sbjct: 1598 RNSFGPSYIFVHSTSHLSQRIMGVYQA---GNGKKSKGDFLRA---------------SEFEGWSGTV---KPAKGADARQQLGKPLPAPERPEGALEGVKNNQVLCAEYEMPPRMPHVCAMLPGVDPPAIELGPEDLTPRRPPRLNRGMSIAELG 1732
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BLAST of mRNA_H-paniculata_contig20866.5430.1 vs. uniprot
Match: A0A7S3UTW4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTW4_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 6.690e-14
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 1 
Query:    1 RNSFGPSYVFANVRTSVGKMLANFLQEKMKGGGRKGDEAKADEEMVLTSAVVENGVSELGGFGGTVVLPKPGVGTSIGETLEAPEEPRGVFDAVENNQVAVTEYKMPPKEPHVCKMLPGVQLMERTLLPEDLAPRRAPRLNRH-MSIAEMGENKF 462
            RNS+GP Y+F +      + +    ++              DE   L     E+    L GF       +P +  ++ E +EAP++P G  + +  N++A  EY +PP  PH+C++L G +     L P+DL PRR PRL+R  MSIAE+G   F
Sbjct:  209 RNSYGPGYLFVHSSHPGFQDILKCYEQ--------------DETRALEGGKFES----LTGF--VTKSTQPEMAIAMNEPVEAPKQPPGALEDIRANELAAVEYALPPAGPHLCRLLDGAEAPASPLTPQDLLPRRPPRLSRGGMSIAELGGAPF 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20866.5430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVH8_ECTSI6.380e-4854.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF35_9PHAE9.430e-4654.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKU1_9STRA5.070e-2544.87XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S3UTW4_HETAK6.690e-1432.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20866contigH-paniculata_contig20866:191..4170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20866.5430.1prot_H-paniculata_contig20866.5430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20866 191..4170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.8562214-CDS-H-paniculata_contig20866:190..3611622929546.8562214-CDS-H-paniculata_contig20866:190..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 191..361 +
1691480908.2459042-CDS-H-paniculata_contig20866:190..3611691480908.2459042-CDS-H-paniculata_contig20866:190..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 191..361 +
1622929546.8682096-CDS-H-paniculata_contig20866:1404..15001622929546.8682096-CDS-H-paniculata_contig20866:1404..1500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 1405..1500 +
1691480908.2628572-CDS-H-paniculata_contig20866:1404..15001691480908.2628572-CDS-H-paniculata_contig20866:1404..1500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 1405..1500 +
1622929546.8793879-CDS-H-paniculata_contig20866:3086..31461622929546.8793879-CDS-H-paniculata_contig20866:3086..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 3087..3146 +
1691480908.2717023-CDS-H-paniculata_contig20866:3086..31461691480908.2717023-CDS-H-paniculata_contig20866:3086..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 3087..3146 +
1622929546.8922465-CDS-H-paniculata_contig20866:4032..41701622929546.8922465-CDS-H-paniculata_contig20866:4032..4170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 4033..4170 +
1691480908.2822363-CDS-H-paniculata_contig20866:4032..41701691480908.2822363-CDS-H-paniculata_contig20866:4032..4170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20866 4033..4170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20866.5430.1

>prot_H-paniculata_contig20866.5430.1 ID=prot_H-paniculata_contig20866.5430.1|Name=mRNA_H-paniculata_contig20866.5430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
RNSFGPSYVFANVRTSVGKMLANFLQEKMKGGGRKGDEAKADEEMVLTSA
VVENGVSELGGFGGTVVLPKPGVGTSIGETLEAPEEPRGVFDAVENNQVA
VTEYKMPPKEPHVCKMLPGVQLMERTLLPEDLAPRRAPRLNRHMSIAEMG
ENKFD
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mRNA from alignment at H-paniculata_contig20866:191..4170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20866.5430.1 ID=mRNA_H-paniculata_contig20866.5430.1|Name=mRNA_H-paniculata_contig20866.5430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3980bp|location=Sequence derived from alignment at H-paniculata_contig20866:191..4170+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAACTCATTCGGACCGTCCTACGTCTTCGCCAACGTCCGGACATCTGT
CGGGAAAATGCTGGCAAATTTCTTGCAGGAAAAAATGAAGGGTGGCGGAA
GGAAGGGCGATGAAGCAAAGGCGGATGAGGAGATGGTCCTCACCTCGGCG
GTGGTCGAGAATGGCGTTTCAGTGAGAGACAGAGCATAGCGATATATATA
TATATATTTTTTTTAGAGCTGTGGCTTTTTTTGTCCTTTATCCTTCTACC
CATCCATTGGAGAGTCTGCGCAAAAAAACAATGTGATCTAGGATTGAACC
CAGATTTAAAAAAAAAATCCTAGGTCCAACAAGTTCGCGAACGTTGCCGA
CGTTCTTAGGTTTTATACGCAGCGGAATCGAAGATGACTCGGCCGTCAAA
TTGATGAACAGGTACATGATGAATGACGTGTGACGTGTGATGTGTGTGGG
TGAGCCAAGAGTGAAGGAAGGAAACCATGAATGAACTGTTTTGAGTTTGG
TACAGAGAGCCCCACAAGAAGATACAGATGAATAGGGAGTAGCAAGTTAT
ACTTTATTATTAATGGCTGATTCGATACCATTAGCCCGACTGACTACCCG
TCCCCATGCCCATAGCGTCGATTACAGTAATTACATCGTTTAGAGTTTAA
CAGACGATGCTTAAACGGACGGTTTTTACACCATAATCGTTATGCTTGAT
ATTTGTCGACAGACGGTATGTATACAATTCAAGTAATGCTGTGTTCAAAT
TACAATCAGATTCAATCCCCAGGGCTTGAACAATGACCATTGACACTCGA
ACAACCGGATGGTAACGCGAATACAACGCGCGAGTCTAGGATCCCCAGAG
GACAAAGTCACAGACTACTGTAGTAAGAAAGTTTTGGGTCCCAAGACAGG
AATTCAACCACCGCACCACACAGACAGTAGTAGCAGGCAGACTATACGCA
GTCGGTACAGAGATCGGGAATGCAAGTGTGAAGCCATCAACACATGATTG
AGAGACGAGAGATGGGTGGGTTTCCATCGATACAGATGGCTGCGAATGAC
GACGGAACGAGCTGTACACCGTACTATTATACACAGCTACCACAAGCCAC
CGGAAAGTAGATGACCTCTGAAGTGTACAATACAGTACGGTACCGCGTTG
GTATTGTTGCTTGCTTGTTCGTGGTTGATTCGATATTGTTGATGCTACTA
CGATCATGTTCCAGGAGTTGGGCGGATTCGGAGGCACCGTCGTGCTTCCT
AAGCCAGGGGTTGGGACGTCAATTGGGGAGACGCTGGAGGCACCAGAGGA
GCCCAGAGGGGTGAGTCAGCAAATTCGTGGCAATGTATATAGTTATATTC
CACACGTTTCGGACAGAACAGAACAGAACATTTAGAACAACACATGGACC
GGAGATGGTGTGCCACTGAAAAGAACGTTCTACTATGTGCTGTTGAGTCA
CTCGGCACGAGGACAGCGTCTTTGGCACCAGCGACGAAGGAACGCTGTTA
CATGGTCATATTCCATTCCATTTGCAGGCACACGATTCTGGAGTGACTGA
GGATGTCAGTCTGTGCGACAACGGGTGTGGTAACCGCACCGAGAACTTTA
TTCTGCAGAATCTGTTTTGTCTCGCTTGAGGTATATCTATATATATCTAT
ATTTCTCTTGGAGTGCCAGTATTCTAGACTTCAAAGCGTTTTTTGCTTGC
TTTATCTCTCGGGGAGGTTGGTGGGGGACTCTGTTCAGGTTCGCAACCTA
AATGGCATCAACTCCGTTCTCCTTGTAATACTTTTTTTTTTTTTTCACCT
GTTTGGTTTTAGATGATTAAAAAAAAAAAAAATGTTTACACTCTTTTGTC
TCTTGTCACCAACGTCGAATTCGCGAAATGGAATGGTGGATTCGAGAAGC
CTGTGATGTAAGATTTTTTTTTAGTGATGGTTGTCAATACAGGTTATAGT
TCAACTCGTCGTCTTATGTCATGTGATAGACAAAACCAAAAATAAGTCGT
TATAGTTTTTTTCATTTGTCGTTTTCCGTTGGAGATTCGTCTAAACTCTA
CGCGAAATTATCTGTCTAACAGAAGACTTGAAAAAAAAAAGAAGTAAGTG
CACCGTATATCACATCCGGTTATTTTTGGAGAAGTGATGCTGTAGTAACT
CCCGGGTGCAACGTATTCGTCGTGCGAGAGTATTCACGAACAATACCCCA
TCTCTTTTGATTAAAAAATATCCCCATGAGAAAAACCCGGAACCGGTCAA
GCGGATTCAGAAAGAGGATGTCTGGCATAATTCTTCAATTTTTCTTGGAT
GGAAAAGTTGAATAGTTGTGTGTGTGTTTTTTTTGTTTAGTTTTTTAATC
CCCCTCGCTATCATCTGAACTTGTGAGTAGGCCTTGTACTCTGTGGGTTC
TGTAATGTAAACTAATATACTTGATTTTTTTTTTTTTTTCGGTAAGTATT
GATGATTTGCAATTGGGGGTTGGGGATGGAATCGTCACATTAGATGATGG
CTGTCATGTCCCGCAATCAACATCTGATAACACTGGACCATTTACGTACG
ACTGCTCTGACATAACCCAGAATTAGAAAAGGAACATTAAACAGGGGGTC
AACACTTGTTTTTCCACAAAATAGTTTTGTTCACACATTCTGTGTGTTGA
GACGAATATGTAATCGGGTAAGAGAAAAATGTGGCGAGTACTTCAAGTGC
AACTATTCGTAAATGTCCGAAATGGTGTTTATGTTTCATGTATTTAGTAT
ATTCGGACGGACGGACACTCCTATCACAGTTACAAAAAAGACCTTTTTTT
TTTTTTTTTGCTCATATGTCTTGGATAGCGTGTGGTACTGTGTTATTTTG
CTTTTATGCCAATCGTCAACAACGCTGATTATGTTTGCACGGTCAGGTGT
TCGATGCCGTGGAGAATAACCAAGTGGCCGTCACGGAGTACAAGATGCCT
CCCAAGGTATACTGTATAAATTTATCCATATATAAGTTAGTTTTTTAAGA
ATTGAAGGGTTTGGAGGGACTGTAAGAGGCAAGGCTTGGGTAAGGCTGCA
AGAGGATCTGTTGCTCCCAGTTTGTTTGGGTAATGATTATGGATGAAGTT
GGAGTTTATTGTCTTTTCTCTGACGGCGATTTAACACATTTGGGATTGTT
ACTGCAGATGCAATGAGCTATGTTTATGCGAAGATGTCAAACGTGAAATG
ATTAGCATTAAATTTCATTTCTTCTATTACCATTAAAATCAACCGTAAAA
TTACCCGGGGTAAAAGATTATCGTATGACTATATATATCCAAGGTCACCT
GTACCTTTTGATGTACATTGCCACATACCCTGTACCTTCTTGATCAATCA
ACACATATCATCGCATCACGTGAAACGCTGAGACCGCTATCGCCATCGTT
TGGGAAGGAATTTGTCACTGACATAGATAGTGCCTTCACTTTCTAAATTT
TCACCAAATTAAAAAACCTTGGAGGGAGCATGGAGGATAGCATCCGTACG
ACTGCTCTGGGGTTAGGGTTGACGTGGCTCGACGAGATGTGAAATTGCTG
CAACAGACGGATATTTTGTCTCAAGTCATTCCAAGAAAGGGAAGAGGAGA
TCACCTATACATGAGAGATGATGTCATGCACCATCGATGACTCGTCCAGC
GCTGTACTTGACTGTACTGTCGGGGGTCACTGCACGCTGGGCTTTTGCCA
AAATATACACAATACCTCTAATAGTCTGCGGTGGAGGATGGTGTATCGAT
TCTCTAGATGGGCAAACAAACCCACTCACGCTGTGCTGAGTATCTTTTAT
CGTGAGCTCACCGGCTGTGATCTCGGTGAATCGTCATGGCAGGAACCTCA
CGTTTGCAAGATGCTGCCTGGGGTGCAGTTGATGGAGCGGACGCTCCTGC
CGGAGGACCTCGCGCCCAGACGAGCGCCGCGCCTTAACCGGCACATGAGC
ATTGCAGAGATGGGTGAAAACAAGTTTGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig20866:191..4170+

>mRNA_H-paniculata_contig20866.5430.1 ID=mRNA_H-paniculata_contig20866.5430.1|Name=mRNA_H-paniculata_contig20866.5430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig20866:191..4170+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAACTCATTCGGACCGTCCTACGTCTTCGCCAACGTCCGGACATCTGT
CGGGAAAATGCTGGCAAATTTCTTGCAGGAAAAAATGAAGGGTGGCGGAA
GGAAGGGCGATGAAGCAAAGGCGGATGAGGAGATGGTCCTCACCTCGGCG
GTGGTCGAGAATGGCGTTTCAAGGAACTCATTCGGACCGTCCTACGTCTT
CGCCAACGTCCGGACATCTGTCGGGAAAATGCTGGCAAATTTCTTGCAGG
AAAAAATGAAGGGTGGCGGAAGGAAGGGCGATGAAGCAAAGGCGGATGAG
GAGATGGTCCTCACCTCGGCGGTGGTCGAGAATGGCGTTTCAGAGTTGGG
CGGATTCGGAGGCACCGTCGTGCTTCCTAAGCCAGGGGTTGGGACGTCAA
TTGGGGAGACGCTGGAGGCACCAGAGGAGCCCAGAGGGGAGTTGGGCGGA
TTCGGAGGCACCGTCGTGCTTCCTAAGCCAGGGGTTGGGACGTCAATTGG
GGAGACGCTGGAGGCACCAGAGGAGCCCAGAGGGGTGTTCGATGCCGTGG
AGAATAACCAAGTGGCCGTCACGGAGTACAAGATGCCTCCCAAGGTGTTC
GATGCCGTGGAGAATAACCAAGTGGCCGTCACGGAGTACAAGATGCCTCC
CAAGGAACCTCACGTTTGCAAGATGCTGCCTGGGGTGCAGTTGATGGAGC
GGACGCTCCTGCCGGAGGACCTCGCGCCCAGACGAGCGCCGCGCCTTAAC
CGGCACATGAGCATTGCAGAGATGGGTGAAAACAAGTTTGATGAACCTCA
CGTTTGCAAGATGCTGCCTGGGGTGCAGTTGATGGAGCGGACGCTCCTGC
CGGAGGACCTCGCGCCCAGACGAGCGCCGCGCCTTAACCGGCACATGAGC
ATTGCAGAGATGGGTGAAAACAAGTTTGAT
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