mRNA_H-paniculata_contig20860.5427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20860.5427.1
Unique NamemRNA_H-paniculata_contig20860.5427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20860.5427.1 vs. uniprot
Match: D8LMZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ3_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.600e-33
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:  598 HAMLIEELEYESQFWIKTPEEVEAKIGDDLWEHPGASSHGGEISMPGEDLWRFAADTGLPNAEEESTEASGYMRIQMYERMAAMRAAKDYVQDRKTKWLNDTRDIVQQTDRLVHKGG-APKGWLDR 972
            HA+L+EELE ES+ WI TPE+V AKI DDLWE PG ++  G+ISMP E LWRF+AD GL N EE+ +E   Y+R +MY RM  M  A  Y ++R+T+W NDTR ++++ DRL+ K    P G++ R
Sbjct:  192 HAILLEELEAESEHWINTPEDVTAKITDDLWEAPGNNTAKGQISMPDEHLWRFSADVGLYNQEEDPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSR 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20860.5427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ3_ECTSI2.600e-3352.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20860contigH-paniculata_contig20860:1660..4439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001170.1
Exons3
Model size1126
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20860.5427.1prot_H-paniculata_contig20860.5427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20860 3164..4408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.6151378-UTR-H-paniculata_contig20860:1659..22471622929546.6151378-UTR-H-paniculata_contig20860:1659..2247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 1660..2247 +
1691480908.1615763-UTR-H-paniculata_contig20860:1659..22471691480908.1615763-UTR-H-paniculata_contig20860:1659..2247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 1660..2247 +
1622929546.6277456-UTR-H-paniculata_contig20860:3148..31631622929546.6277456-UTR-H-paniculata_contig20860:3148..3163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 3149..3163 +
1691480908.1735682-UTR-H-paniculata_contig20860:3148..31631691480908.1735682-UTR-H-paniculata_contig20860:3148..3163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 3149..3163 +
1622929546.6615558-UTR-H-paniculata_contig20860:4408..44391622929546.6615558-UTR-H-paniculata_contig20860:4408..4439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 4409..4439 +
1691480908.1958883-UTR-H-paniculata_contig20860:4408..44391691480908.1958883-UTR-H-paniculata_contig20860:4408..4439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 4409..4439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.6385183-CDS-H-paniculata_contig20860:3163..33521622929546.6385183-CDS-H-paniculata_contig20860:3163..3352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 3164..3352 +
1691480908.180866-CDS-H-paniculata_contig20860:3163..33521691480908.180866-CDS-H-paniculata_contig20860:3163..3352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 3164..3352 +
1622929546.6490319-CDS-H-paniculata_contig20860:4105..44081622929546.6490319-CDS-H-paniculata_contig20860:4105..4408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 4106..4408 +
1691480908.1882298-CDS-H-paniculata_contig20860:4105..44081691480908.1882298-CDS-H-paniculata_contig20860:4105..4408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 4106..4408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20860.5427.1

>prot_H-paniculata_contig20860.5427.1 ID=prot_H-paniculata_contig20860.5427.1|Name=mRNA_H-paniculata_contig20860.5427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MLIEELEYESQFWIKTPEEVEAKIGDDLWEHPGASSHGGEISMPGEDLWR
FAADTGLPNAEEESTEASGYMRIQMYERMAAMRAAKDYVQDRKTKWLNDT
RDIVQQTDRLVHKGGAPKGWLDRNAKPRKTRARAIGGSSMRESIVPGGAD
DDFDAGFDTDERE*
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mRNA from alignment at H-paniculata_contig20860:1660..4439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20860.5427.1 ID=mRNA_H-paniculata_contig20860.5427.1|Name=mRNA_H-paniculata_contig20860.5427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2780bp|location=Sequence derived from alignment at H-paniculata_contig20860:1660..4439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTAGTACGCGTTTTTTAAATTTTGAATTCGCTTTTTTTCTCAAATTCC
ACACTCGTAGTGATACAGTTTTCGCGAAGTGACGGCCCAACAAACTATCT
CATCACCTATACAGTATATTCTTATGTCCGGAAAGCTGGAAATGATGCCA
CTGTAACGCAAAAAGAATAACAAGTATCCAACAAGCTGCTGTCAAGATAG
AAGGATTTGAACTTGGGCATGTCGCCCATAAGTAGAGCACGCCACTTGAA
ACACGGTCCACGGCCAGAGAATACAGCTAGGAAGGTGAAAGCAGCGCAGA
CGTGTTCCTCTTGACATGGTGAATGTGGTTACGTCAGGGTTTTGATGTCT
CTGTTATGGCGGCGAAGAAGTGCAGGTCGATCAACAGGGGGTCACCTCGA
ATCCAAGTCGGGTGAACAACTCTTTGAAGAAAAGAAGCGGTAAAATCAAG
TTTTTTCCAGGTCACACATCAGGGTAGTGTTCGCGGCGAGGATTGGGATG
AGGAGGGGGAGGAAGGTTTAGGCGATGAACTCAACGAGTTCGAGGCCGAC
TTTTTGGCGGGAGATGAGTGCGAGGGCGAGAGTGATCAGTAAGTAGGCAT
TAGGATTAGCTTTCTGTAAAGTGGGTTGATAGTGCTCAGCAGCAGTACAC
GGCGGCAAGGACTTGTTTGTGTTAGCCCTTACCATAACCTCCCGACAAAG
TCTCAACATTGCCCCATTTTGCATTGTTGTTAATGTGGGAATTCCCCAGT
TGAAACGGCAGCTGATGCAACGCATCTCATGTGCATTGCTTGTACGAATA
CTCGTAAAAAAGGATATTGGAAAACGGAGCGAAAATGGCCAAGGCATGGG
CAAAACAACAATATGCCATACCAGTGTACCGCGTAACTTTGGTCATACTC
TACGTAGATCTCTGTGACACGATAACTCGTTAGAAATACAATATTTTTAA
ACCGAACTTTTTCGTACATGATCTCGCTTACTAGGTCGATGTGATAATGG
GAAAATATTTATTTATTCCTCTGTTGTTGGGAAATAGTAGTATTGACTTT
TAGACCTCTAAATGCCATTTTTCCTGGTTGTTATTGGTTTTTTCGCCGAA
TTAATTTTTTCTAGCCGATGGCTTCCGAGCAAAAGTTTCAGCCCTTGTAC
AGGCAAAGCTTATGGATTTTTTTTTGCGTCACTTTTCTCGTGTTAGATCT
CGAGATATGGCGTTGAATCGAACACAATGTCATTCTCTAGTACAAATATC
ACACACACATGGCTGATGCATCACAAGGATGTGAGATCTACAGAACAAGA
AACGAACTTAATGTCATGGAGCTATTCTGGTGGACCGCGCAGACAACGCT
TAAATGAAAGGTTACAACTTGCAACTTCAATTTGTCGGATGCTTAAAGTC
AACGACAGTGTCAATGTTGATTTCCTTGTCACATACTTGTTTTGCAAGAG
ACACATCGTCTCTTGTCGAACACTCTTTCCTTATCGCAGGCGGAGCACCA
CGCTATGCTGATTGAAGAGCTCGAATACGAGTCACAATTTTGGATCAAGA
CCCCCGAGGAAGTGGAAGCTAAGATAGGAGACGACCTGTGGGAACATCCG
GGTGCTAGCTCTCACGGCGGAGAAATTTCCATGCCCGGCGAGGACTTGTG
GCGCTTCGCTGCGGACACTGGCCTACCGAATGCTGAGGAGGAGGTAGGGG
TTTCGTAGAAATCGAGCGGGTTTTGTGGACGAGAGATGGTGTGGAAGAGG
AGGGGAGGGAAATTTAAGCAAAAAACACATATCATTTTATTACTTGAGAT
GAAACTGTTAGGTTGCGCGCGAAAACGCATGTAGTCCTTACCTACCTGGG
TCTCACTTTTTATTTTTGTTCCTGATGAATACAAGAACCCCCCCCCCCTT
CTCCACTATATCGTGTTTGTTTCGCTCGAATGGTTTATACATGCACGCAT
GCAGTCTTGATACATTAAAAATATAGCTGCACGCGTCTATTGAAGCTTCT
GTGCTTGTTGCCGTGTTATCAAATACATGACTTGTGATAAATAACCCCCC
GAATATTTTTGTGTCATGCTTGGCCTGGTGAGCAAGTAGTTATCGGCCAT
CGGCGATCGCCATGTCTTACGGAAACAATGCTCCGTCCTCTCGAGGCCAT
GTGACCAAAAACAATTTAATGGTTGAAAATATGCACAACATGCGTACCCC
ATACGTCGGCCCCGGCGTGATCCTTTGCTATTTACCAATCCGCTGTAGAA
GATTGAGGCTATGCTTGTGCTTATCTTATCAACCAAGTAATTAGTCCAGT
AGAACACATAAATTCAAATGCAATATACACTGAATAACTCCGTTTTTTGA
CCGCAACAGTGATAAAACAATTGCACTTGATCGTTACGAAGTACTACCCC
CCCCCCCTGCGTGGTCCCTACTTTACGTAATATCTACCCCCTGCAGTCGA
CGGAGGCTAGCGGGTACATGAGGATACAGATGTACGAGCGCATGGCGGCG
ATGCGAGCGGCTAAAGACTACGTGCAGGACCGCAAGACTAAGTGGCTCAA
CGATACGCGGGATATCGTGCAACAGACGGATCGCCTCGTACACAAGGGCG
GGGCACCGAAGGGCTGGTTAGATCGCAACGCAAAGCCCCGCAAGACGCGA
GCTCGTGCCATAGGTGGTAGCTCGATGAGGGAGTCGATCGTGCCTGGAGG
TGCTGATGATGACTTCGATGCGGGTTTTGATACGGACGAGCGAGAATGAG
GGAATACCAAAGTTGGCGTTTCGTGGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20860:1660..4439+

>mRNA_H-paniculata_contig20860.5427.1 ID=mRNA_H-paniculata_contig20860.5427.1|Name=mRNA_H-paniculata_contig20860.5427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig20860:1660..4439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGATTGAAGAGCTCGAATACGAGTCACAATTTTGGATCAAGACCCC
CGAGGAAGTGGAAGCTAAGATAGGAGACGACCTGTGGGAACATCCGGGTG
CTAGCTCTCACGGCGGAGAAATTTCCATGCCCGGCGAGGACTTGTGGCGC
TTCGCTGCGGACACTGGCCTACCGAATGCTGAGGAGGAGATGCTGATTGA
AGAGCTCGAATACGAGTCACAATTTTGGATCAAGACCCCCGAGGAAGTGG
AAGCTAAGATAGGAGACGACCTGTGGGAACATCCGGGTGCTAGCTCTCAC
GGCGGAGAAATTTCCATGCCCGGCGAGGACTTGTGGCGCTTCGCTGCGGA
CACTGGCCTACCGAATGCTGAGGAGGAGTCGACGGAGGCTAGCGGGTACA
TGAGGATACAGATGTACGAGCGCATGGCGGCGATGCGAGCGGCTAAAGAC
TACGTGCAGGACCGCAAGACTAAGTGGCTCAACGATACGCGGGATATCGT
GCAACAGACGGATCGCCTCGTACACAAGGGCGGGGCACCGAAGGGCTGGT
TAGATCGCAACGCAAAGCCCCGCAAGACGCGAGCTCGTGCCATAGGTGGT
AGCTCGATGAGGGAGTCGATCGTGCCTGGAGGTGCTGATGATGACTTCGA
TGCGGGTTTTGATACGGACGAGCGAGAATGATCGACGGAGGCTAGCGGGT
ACATGAGGATACAGATGTACGAGCGCATGGCGGCGATGCGAGCGGCTAAA
GACTACGTGCAGGACCGCAAGACTAAGTGGCTCAACGATACGCGGGATAT
CGTGCAACAGACGGATCGCCTCGTACACAAGGGCGGGGCACCGAAGGGCT
GGTTAGATCGCAACGCAAAGCCCCGCAAGACGCGAGCTCGTGCCATAGGT
GGTAGCTCGATGAGGGAGTCGATCGTGCCTGGAGGTGCTGATGATGACTT
CGATGCGGGTTTTGATACGGACGAGCGAGAATGA
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