mRNA_H-paniculata_contig20860.5426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20860.5426.1
Unique NamemRNA_H-paniculata_contig20860.5426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20860.5426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20860contigH-paniculata_contig20860:593..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size466
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20860.5426.1prot_H-paniculata_contig20860.5426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20860 628..972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.5544665-UTR-H-paniculata_contig20860:592..6271622929546.5544665-UTR-H-paniculata_contig20860:592..627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 593..627 +
1691480908.1371815-UTR-H-paniculata_contig20860:592..6271691480908.1371815-UTR-H-paniculata_contig20860:592..627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 593..627 +
1622929546.5757551-UTR-H-paniculata_contig20860:972..10581622929546.5757551-UTR-H-paniculata_contig20860:972..1058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 973..1058 +
1691480908.1535196-UTR-H-paniculata_contig20860:972..10581691480908.1535196-UTR-H-paniculata_contig20860:972..1058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20860 973..1058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.5653484-CDS-H-paniculata_contig20860:627..9721622929546.5653484-CDS-H-paniculata_contig20860:627..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 628..972 +
1691480908.1454866-CDS-H-paniculata_contig20860:627..9721691480908.1454866-CDS-H-paniculata_contig20860:627..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20860 628..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20860.5426.1

>prot_H-paniculata_contig20860.5426.1 ID=prot_H-paniculata_contig20860.5426.1|Name=mRNA_H-paniculata_contig20860.5426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MLRALLLAAHVSETRKTVPQFSMTISVDVGSVFYFLVAFALCAATARVVG
LLFYFRSSISAYGELRAVTASRFFQFSSVPSQHNPFRLFVDQEGSGGGGV
ALAIPLEVFSLDSS*
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mRNA from alignment at H-paniculata_contig20860:593..1058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20860.5426.1 ID=mRNA_H-paniculata_contig20860.5426.1|Name=mRNA_H-paniculata_contig20860.5426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig20860:593..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAAAGACTAGCTAGGCCTATTGCTATGTATACATGTTAAGAGCACTG
TTGTTGGCAGCACATGTTTCTGAGACAAGAAAAACTGTGCCACAATTTTC
CATGACCATCTCTGTAGATGTGGGAAGTGTATTTTATTTCTTAGTCGCTT
TTGCCTTGTGCGCTGCTACTGCACGAGTTGTTGGCTTGCTTTTTTATTTT
CGTTCCTCCATCTCTGCTTACGGCGAATTGCGAGCAGTAACAGCGTCTCG
CTTCTTCCAGTTCTCCTCGGTACCGAGCCAGCATAATCCGTTTCGTCTAT
TCGTGGATCAGGAGGGATCCGGTGGTGGTGGGGTTGCACTAGCTATACCT
CTTGAAGTATTCTCGCTCGATTCGTCATGATGGGGGCAGTTCATTCACCT
TTTCTCTGAATTCCCCGACCTCCCCCTGGAATATTATAGCACGGATGGTA
GTGCGGACAATACCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig20860:593..1058+

>mRNA_H-paniculata_contig20860.5426.1 ID=mRNA_H-paniculata_contig20860.5426.1|Name=mRNA_H-paniculata_contig20860.5426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig20860:593..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAAGAGCACTGTTGTTGGCAGCACATGTTTCTGAGACAAGAAAAAC
TGTGCCACAATTTTCCATGACCATCTCTGTAGATGTGGGAAGTGTATTTT
ATTTCTTAGTCGCTTTTGCCTTGTGCGCTGCTACTGCACGAGTTGTTGGC
TTGCTTTTTTATTTTCGTTCCTCCATCTCTGCTTACGGCGAATTGCGAGC
AGTAACAGCGTCTCGCTTCTTCCAGTTCTCCTCGGTACCGAGCCAGCATA
ATCCGTTTCGTCTATTCGTGGATCAGGAGGGATCCGGTGGTGGTGGGGTT
GCACTAGCTATACCTCTTGAAGTATTCTCGCTCGATTCGTCATGAATGTT
AAGAGCACTGTTGTTGGCAGCACATGTTTCTGAGACAAGAAAAACTGTGC
CACAATTTTCCATGACCATCTCTGTAGATGTGGGAAGTGTATTTTATTTC
TTAGTCGCTTTTGCCTTGTGCGCTGCTACTGCACGAGTTGTTGGCTTGCT
TTTTTATTTTCGTTCCTCCATCTCTGCTTACGGCGAATTGCGAGCAGTAA
CAGCGTCTCGCTTCTTCCAGTTCTCCTCGGTACCGAGCCAGCATAATCCG
TTTCGTCTATTCGTGGATCAGGAGGGATCCGGTGGTGGTGGGGTTGCACT
AGCTATACCTCTTGAAGTATTCTCGCTCGATTCGTCATGA
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