mRNA_H-paniculata_contig2085.5421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2085.5421.1
Unique NamemRNA_H-paniculata_contig2085.5421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2085.5421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2085contigH-paniculata_contig2085:3585..7994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionB1358B12.18
Ec32 orthologEc-01_000870.1
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.0288196-CDS-H-paniculata_contig2085:3585..36651622929546.0288196-CDS-H-paniculata_contig2085:3585..3665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2085 3586..3665 -
1691480907.8620257-CDS-H-paniculata_contig2085:3585..36651691480907.8620257-CDS-H-paniculata_contig2085:3585..3665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2085 3586..3665 -
1622929546.0478263-CDS-H-paniculata_contig2085:7807..79941622929546.0478263-CDS-H-paniculata_contig2085:7807..7994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2085 7808..7994 -
1691480907.8757653-CDS-H-paniculata_contig2085:7807..79941691480907.8757653-CDS-H-paniculata_contig2085:7807..7994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2085 7808..7994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2085.5421.1prot_H-paniculata_contig2085.5421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2085 3586..7994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2085.5421.1

>prot_H-paniculata_contig2085.5421.1 ID=prot_H-paniculata_contig2085.5421.1|Name=mRNA_H-paniculata_contig2085.5421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
YDGPRVCVPECVCVCVVSEESGLGAAGMTLTNLALVLASWSCIESCSGFG
MVTTTSLQQCPQGHNCRPPHRRHSTRCGRIACGIRDMRA
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mRNA from alignment at H-paniculata_contig2085:3585..7994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2085.5421.1 ID=mRNA_H-paniculata_contig2085.5421.1|Name=mRNA_H-paniculata_contig2085.5421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4410bp|location=Sequence derived from alignment at H-paniculata_contig2085:3585..7994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGATGGGCCTCGAGTATGTGTGCCTGAGTGTGTCTGTGTGTGTGTCGT
GTCAGAGGAGAGCGGCCTGGGTGCGGCGGGTATGACATTGACCAATCTGG
CCCTCGTGCTGGCGTCGTGGTCTTGTATTGAATCTTGCTCTGGGTTCGGA
ATGGTGACCACGACATCGTTGCAACAATGTCCTCAAGGTGCGAACGAACA
CGAACTGCAAAATGGGATGATCATGTGTCAAGTAGAGAACAGCAACAACA
TGTACTGCATGTCGTACGTCAACGGAAGGCCCGCTTATGTACACACACAG
TACAGTGGCATAACACGGTTCGTATAGATGAACTAGATTGTAGCCTTAGT
ATGACAGATATCACCTTGTAGGCGCTGGTCTCTCAGTATTAGCTTGAACG
GGTTCTCACCAATTTAGTATTTCAAGGCAAAATTGGTAAGATATAAGTTT
GAAGGAGAAACATCGGATTTCATGTAGGCTAAAATTGATTAGGATACAAG
TTTGTAGACGAAACACCGGATTCCGTGTAGGCCAAAAGTGATAAGGAAAT
AAATTTGAGGCGAAATCACTGGATCTCATTAGTTTATTGTTCATTTCGAA
ACGGTTTGGCCAATGGAAACAGGTGTAATGTGGAGGTGTGGCCAATGAAA
ATAGGTGTGTGACGATGAGATGTCTTTCTGAATTAGGCCCGCGGGTACTC
ATCTCTACGAAATCCCTACCTACTCAGGGGGGAAACGACGCGTATATAAG
ATGATCATGGGGATAATATGAAGCCGCCGCTGTTGAGACGGCAATTCCGG
TACAACCAATACATGAATCACAGAGAGGGGGGTTGGAGTGAAACTGAGCA
ACACGACTGCAGCGGTCGCCTTTGTTGGTCGTCAGATTCATTTTTGTTCC
GAAGTATCCTCCAGCGCCCAATAGAGTACACAGAAATCACAAAATCAAGA
ACGCGAACACGATGCGGTTCCTCAACTTGTGCCGTGTCCAGAGGGTAGGA
GCATAGATGCGGCAGGAAAAGAAGACAGGCAATGACCACCTGTATCGATC
GTTCTCGGAATAGAGTCGAGGTGCAATAATCGGTACATATATTACTCTGT
TATAGTATTAAAACTGTGATGTTCCGACCTGACACTGATACGTCACATAT
CGTATCGAGGACGCGAACATTATCAGCTCGGTATCTCATCAAATCTGTGA
TGTATCGACCTGTTCTTGATACACCTTAACTCTTTTACTCCTGGGGTCTG
TAGTGTGACCCTTTGGGGTTTAAGAAACCTCACAGTCCCGTGTTCCAGGA
TGAAGGGGGAGGGTTACCGACTTGTGACAGACGAATTTTTTTCGGCGATG
ACTATACCCGTGGGACATGAAATGAGAAACGTACCACGAACGAATAGTAC
CAAGGGACTCAAGCAGCGAAAGGAATCAAAATGAAAAATTTAATTTCAAT
CGTTGTATGTGTTTGCCAGTTGCCAGTTGCCGGTTGCCAGTTACCAGTTA
CCAGTTGATGTAGATATAGTGCAGCTGACAGACTGCAGTACCACGTCTAT
TGGTTTCATCGAGCGGTGGCAGCCAGCTGGACAGCGCGAACAGCATAGTA
CAGCCGGTAGAGTCGCGCGCGATCACAGAAGGAATAGACAGTCAATGAAG
TAGAATGCATGCAATAGGCAGTTGTATACTGCTACAACACCATGCTTATC
TATCCGTCCGGTAATGCTGAGGTAACAACAGTAACAATAGAGAGAGGGAC
GTAGGTAGACAGGCATTATCATCTCCCGAGAGTTCCCTAGTGAGCGGTAA
CCGCTGTGTGTATGGTGTCCTGTTATATGTAACGGTACCCACAGGCACAG
CAGCTGGCAGCCTGCCACAGTTATCGCAGTGGGACACGACAGCACGAATT
ATGACGTTATTGGTAATTCGGCGTTGGCTTTCCTGAAAAGAAAGAAAAAG
AAATGCTTCTCCTGTCAACATTTCTTTTTCCTAGCAGTCAAGGGGTAAAC
CCTTCATGAACCGCACCTCCTGAACACCAAAAGCGGTAGATCCTAATGGT
CAGTCCTAAATAATGACGAATATACGAATATATATACAACAACTCGTGAA
TCACGATAATACAGAAAGAATGCTAACCAGCTCTACTAGCCTGATTAGGG
AGTTTCAATTGCACAAGTAAGACCATTTTTTGCCGATAGGAGTATATTTA
TCTTGGATTCCGTTTGGAAAAGCCCAAAATACGGAATGGAAAATACCTGT
ACACTACACAGCAAGGGGCTGGTTTACGAAAGCGTTGCTTTCTGTGTCAC
AGTTTATCATATATGTCATCTACTGATCGGTCTTGGATCAGTCGCGAAAC
CGTGAGTGAACTGTACACGAAGTGGCACTGACTGAGAGATTCTGATGCAC
ATTGCAACCGTCGCTAGACCGAGTGACCATGCCCTGGGTGGCACTGACTG
TGACTCCCCAACACACTCCAACGCTTGCGAGGTCGCTGGAATGTCGATTA
TCCGACAGTCTGGGCCACCTTTTTTCTGTTGTTGCAAAAAACGCAAAGAC
ACACAGTCGCCTTTTCCCGGCTAACTCGGCTACAGTCGGGTGTACTCGAG
GCAGCAATTCCACCTCTGCTCTGCAGGATCTCGCGCTGGCTAAGATCAAC
GGCGAATGAAGTACAGGACAACGTGTGCATAACTGAACTCTGCCCTATCT
GTACTAAGTGTGACAAAAAATACGTAATATCTGAAGGTCGGCCTGACTGT
CCGCAATCAATACAGACAATACAGGCAGTACTATCTGTATTGCCTGATAA
TGTTTGCACTGTCAATTTTCTGTTACAATGATATTGCGAAGCCAAAAGAA
GGGCACCTTCATTTTTGTCTTTTATGCTGTCCATCATGTTTCGTTGATGA
ATGGCGCTCGATGCACAAGTACTGCTACTCTCAGGACCCACCTCGTTATT
TGTTTGTGGACAGGAATTCAAGAGAGGGTAGCGAATGAACAGGGAGGGGG
ATCGCTAGCCTGGTGAAAAGGAGAAAATGTTCAATGTAGTGTGCGTAGAT
TCCATTGCTGGGCAATTATTTGCACCGTATAATTCAGTATACACGTGTGA
TATTTATTCCTATGTAGATATTGGATCCTCTAAAAACTTCGCACAGTAAG
TAGCGAAACGACGATGTGTGGAGAGCTATGTAATTTTATACAAAATGGTG
TGCTGCTCATCCCAACAAAAGGTTTAACGTCCAAATACTGCAGGCGATCG
TTGGTGGGGCGTGGGGCGATTTTTTCGGAGGGAGGACGTCGTTATGCCAT
GTACTAAAATGATACACTTGAAGCGTCTGACTCACAAGTAGGTCCATAAG
TCAGCATTGACAAGGCAGAAGCAGTTCTGGAACAAATAATAGTAGAGTTG
ATGGCTGCGGAAGACCTCTTGACACTTGTTCATTGCCCGTCGACTGCCCG
ATACGGATGGATTATGTTGTGTAGATGGATAAAGTCAAGCATGGGCACGC
TACCTGCACAGGCGATTGCGGCTGTGGTCTCGCGGAGCAGCTCTTGGAAA
TACTTTTGTCTACCCATGAGTCGTGGTTCACCAAGTAGCAGTAGGGCATC
TATCCACTCACTGTTCACTCGGGCTTACACGTCAGAAAACGGCAGTCAAA
TAGTAACAAGTCCGCCGTGTTTCTCCCAGCTCTGTTTCTCTTTTTCGTTT
TGGTCCGATGTTCATTCTATTTCGCATCCCGTGTGTCGTATCGTTTCCCC
GTCCCGTGATTGTAGGTGATGGAAAATGGCCTGAAATCGCAAGGGTTGGG
GTAGATTAGTCAGCAATAAAATGCTTTGAGTCGTATTGGTAATGTAAGGA
AGAGCGATTAGGCATTGGAGGTCACTCTGATACAAAAAAATCCCCGTACT
CTCGAGGACGCATGGTCACTGGCGTATTGTTTAACAACAACGGCATGCTA
AACATGAATGCTACCCCCCCCCGCGCTTTGCGCAGTGCTTCGTGCGCGCA
CCCCTATCGTCCTGTCCAACATGCCTAGACTAGGGTGGGGAACAGTGGCC
GAAATATCTCGCAGTAGAAGTCGAGTAGTAGGTGGTATTCATAACAGAGA
CACGGCGGGGGGAAGAGGTGCATGAGCGGGTGTACAGAGGAAGAGGAACG
GGACTATCATACACCTACAATCGAAGCGGTGGTTTTTTATATTCTACAAA
GCACTTCTCTCGCTACAACAGTACCGTGAGGCTCTTCGAAAAGGCGTTTT
CTACCACAAGCACCCCGCTATCAACGTAACGCACTCTCACTTACGCTGTA
CCTCTCTCCATTCTGTTCACATATCGCAGGACACAATTGCCGCCCACCGC
ATCGACGACATAGTACAAGATGTGGCAGAATAGCGTGTGGAATTAGAGAC
ATGAGAGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2085:3585..7994-

>mRNA_H-paniculata_contig2085.5421.1 ID=mRNA_H-paniculata_contig2085.5421.1|Name=mRNA_H-paniculata_contig2085.5421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig2085:3585..7994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGATGGGCCTCGAGTATGTGTGCCTGAGTGTGTCTGTGTGTGTGTCGT
GTCAGAGGAGAGCGGCCTGGGTGCGGCGGGTATGACATTGACCAATCTGG
CCCTCGTGCTGGCGTCGTGGTCTTGTATTGAATCTTGCTCTGGGTTCGGA
ATGGTGACCACGACATCGTTGCAACAATGTCCTCAAGTACGATGGGCCTC
GAGTATGTGTGCCTGAGTGTGTCTGTGTGTGTGTCGTGTCAGAGGAGAGC
GGCCTGGGTGCGGCGGGTATGACATTGACCAATCTGGCCCTCGTGCTGGC
GTCGTGGTCTTGTATTGAATCTTGCTCTGGGTTCGGAATGGTGACCACGA
CATCGTTGCAACAATGTCCTCAAGGACACAATTGCCGCCCACCGCATCGA
CGACATAGTACAAGATGTGGCAGAATAGCGTGTGGAATTAGAGACATGAG
AGCAGACACAATTGCCGCCCACCGCATCGACGACATAGTACAAGATGTGG
CAGAATAGCGTGTGGAATTAGAGACATGAGAGCA
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