mRNA_H-paniculata_contig20839.5417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20839.5417.1
Unique NamemRNA_H-paniculata_contig20839.5417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20839.5417.1 vs. uniprot
Match: D7FNB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB8_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.170e-42
Identity = 90/194 (46.39%), Postives = 117/194 (60.31%), Query Frame = 1 
Query:    1 QVTLLGEARTILTEVITRDTSGRGATTALAHHALGNVIGSIVDLHRQHCPT-SWSSCPLQCPSPAECVELLRESGRHFKESLAICNCQPTPPAGMDEVMVHWGDAEASAMRIAMEGSTVGRGDGDTDKGRLPWQSPPGPIVQEALRLCSNACNKYAEALNLESSTGGSDADTLLSRAGVVVDMLDWALPETLYP 579
            Q+ LL E+R++L  VI  DTSGRGATTALAHHALGNVI ++V+      PT   +   ++CPS A   E L  + RHF+ S++I           +EV++HWGDA +S M+I M+                   S    +VQE L LCSNAC+KY+EAL  E+S+GGSD D L  +AG VV+ LDWALPE L P
Sbjct:   97 QMALLSESRSLLESVIEADTSGRGATTALAHHALGNVICAVVEAFEDQRPTVQCADGSVECPSAAARKEHLSLACRHFEASVSITKRLQNQSGEAEEVLIHWGDALSSMMQIVMDDGATXXXXXXXXXXXXXXXS----LVQEVLGLCSNACSKYSEALASETSSGGSDTDILRLKAGTVVNFLDWALPEALPP 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20839.5417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB8_ECTSI3.170e-4246.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20839contigH-paniculata_contig20839:1104..4251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-24_000190.1
Exons4
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20839.5417.1prot_H-paniculata_contig20839.5417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20839 1104..4251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.5784588-CDS-H-paniculata_contig20839:1103..13271622929545.5784588-CDS-H-paniculata_contig20839:1103..1327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 1104..1327 +
1691480907.6275175-CDS-H-paniculata_contig20839:1103..13271691480907.6275175-CDS-H-paniculata_contig20839:1103..1327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 1104..1327 +
1622929545.589425-CDS-H-paniculata_contig20839:2786..28821622929545.589425-CDS-H-paniculata_contig20839:2786..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 2787..2882 +
1691480907.6359243-CDS-H-paniculata_contig20839:2786..28821691480907.6359243-CDS-H-paniculata_contig20839:2786..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 2787..2882 +
1622929545.6003935-CDS-H-paniculata_contig20839:3244..33831622929545.6003935-CDS-H-paniculata_contig20839:3244..3383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 3245..3383 +
1691480907.6437454-CDS-H-paniculata_contig20839:3244..33831691480907.6437454-CDS-H-paniculata_contig20839:3244..3383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 3245..3383 +
1622929545.6146836-CDS-H-paniculata_contig20839:4131..42511622929545.6146836-CDS-H-paniculata_contig20839:4131..4251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 4132..4251 +
1691480907.6538658-CDS-H-paniculata_contig20839:4131..42511691480907.6538658-CDS-H-paniculata_contig20839:4131..4251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20839 4132..4251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20839.5417.1

>prot_H-paniculata_contig20839.5417.1 ID=prot_H-paniculata_contig20839.5417.1|Name=mRNA_H-paniculata_contig20839.5417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
QVTLLGEARTILTEVITRDTSGRGATTALAHHALGNVIGSIVDLHRQHCP
TSWSSCPLQCPSPAECVELLRESGRHFKESLAICNCQPTPPAGMDEVMVH
WGDAEASAMRIAMEGSTVGRGDGDTDKGRLPWQSPPGPIVQEALRLCSNA
CNKYAEALNLESSTGGSDADTLLSRAGVVVDMLDWALPETLYP
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mRNA from alignment at H-paniculata_contig20839:1104..4251+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20839.5417.1 ID=mRNA_H-paniculata_contig20839.5417.1|Name=mRNA_H-paniculata_contig20839.5417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3148bp|location=Sequence derived from alignment at H-paniculata_contig20839:1104..4251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTACCTTATTGGGCGAGGCGCGAACGATACTGACAGAGGTGATCAC
CCGAGACACGAGCGGTAGGGGAGCAACCACTGCCCTTGCGCACCATGCCT
TGGGAAACGTGATCGGCAGCATTGTCGATCTACACCGACAGCATTGCCCG
ACCTCGTGGTCGAGCTGCCCGCTTCAATGCCCTAGTCCTGCGGAGTGCGT
CGAGCTATTGCGTGAATCCGGCAGGTTCGAATTTCGGATTTCGTGATCAT
CAGGTGTACCTGTCTGCTGTAGTTATGTTTGGCTTTTTTCGTCTCGGTAA
TAGATAGGTGGGAAGGACGATTCGCCCCCGCCCCGCATCCTCCTTCGAGT
TTGAGGCTAAATGATTAAAGCCTTCACGTATCTTTATTGCACGTGGTTAA
GCGTAGTTGGTCAAGGCTCACTGCATCTACTAGACAATAGTCAAATCAAT
TTTAGGCCGATTTTGTTATTCAGGCCATCTTGACCTTCAGGCCAGGTTTG
TCGGCAGAGCACAGATTTCACTATTTACTTCATTTTAGAATACAAACAGT
GGACCCGATTTTGGGCCGGGTTTTCTTGGCAGGGCACAAAGTTCACTAGT
TACTTGATTTTAGTATGAAGCCGTGGACCGGCCGGCTGTTTGATGGCACA
CGTACTACTAACGGCCTTGAATTTGGTCCACTACTGTACCTACTGAACTC
ACCTCAAAGCGTAGTTTGTCGTACCGTATGCTTCCTTCCTCTCGCGCATC
CTTTTGGTTAAGTTGTTGAATCAGTGGCTGAGCAATGGTCACCTCTGGAT
GCGGTACTTTTGAAAACATCTTTGAAGTTTTATATAATCCGATTCATGTT
GAAAATCAGCAGTTTTTGGAGCGTTTCGAAGGAGTGCTCCAAAACAGATG
GACGATGGTTTGCGTCCCGAGGTCTGATATGACCCAGTTTCGATTATATG
GAAGAACATGTCTAAAATACAGATCTCACAGGGCGGCGTCCCGACAGGGT
TAAAATCAGAGCAAACCTTCAGTTGTGGTTGGTGATATACTGTCATGTTT
CAATCCCCATGTCCACATTGTTGGAGTGTTTGCGACAATAAACAGCTGTT
CGTAATGCTCGATTTGGTCCTGCTATATGGCTCACAGTGAGCTTCCGGTT
GATCCCGGATCAGTCCATCTGAACTAACGTTGCGCTACAAAACGAATGCT
TTTTCGAAATTGTAAAGTTCCGCGAGTATTACGACTTGTGACGTGTCTTG
AAAATGAAAAAAAAATTGTAGTGAAACGTTGGTGCAGGTGGACTGCGGTC
TGGGATATGCAGCTTACCCTGAGCCGTACAGGGCCAAATCGAAATTCACG
AACACTTCATTGTTGATGCTGGCCTCTTGGTGAAGCTGGCCTTGGTAAGG
AGAGGCTCTCGTGTTGTGATCGTTGTGATCGTTGTGATGGTATAGTTGAT
GTGTAGAGTTCCCGGTCCTGCTTGCAGTACCTCCTATACTTGTGACCTTG
AATTTTTCGGTAGATTTCGTTTCGTACAGTTAGCACACCAATCGAACAGG
GTGCAACGATGATTGACAGCGTATGCCCCCCCCCCCCTCCCCCGAAAACT
AGCCGAGTCCGCGATCCTCACTTGATTCCCGCCCTCTCGTGGCTTGACCA
ACCTCGTACTTGGGACAATGATGAAATGTACAGGCACTTCAAGGAATCGC
TCGCCATTTGCAATTGCCAGCCGACCCCTCCGGCGGGCATGGACGAAGTT
ATGGTGCACTGGGGCGATGCAGAAGCCAGGTAGGAGTAGCATCAGCTCCT
GTGTTGGCTGTTCCCTCCCAAAGGGGTACAGTTTAGCTCTAATGAAGATA
TACTCGTGGTGACAACTTGTTTTTTTACTTGGTTTCGCTTAAGTATCACC
CGTAGAAGTTGTGGTCTTCTGTCTCAAAATTACCCAGTCTATAGTTTGCC
CCCCTACAGGTTAATGGTAAAGCGTTTATGTAGTCGATCAAACTTGCTGC
TTCAACACAGGCGTTCTTTTCGATTTTCGGTTTTCGATTGTTTCTCTGGT
AACCCTGCGTGTTTCAGCAATATTCGTGTACATGAAACATGTATTCCCTT
AAAAAACCAACTGATAAACAACCGCCCCGATAATTGAACAGCGCGATGCG
CATCGCTATGGAGGGCAGCACGGTGGGTCGTGGGGATGGCGATACAGACA
AAGGGAGGCTACCCTGGCAGTCCCCCCCAGGCCCCATAGTACAGGAAGCC
CTGCGACTGTGCTCAAACGCGTGTAACAAGGTGTGTATCGTGTGTTGAAT
TGGTCGTCAAATGCAATCCGGTGGTTTCGTATTTTCGGAACATTTTGTTT
TCAGGAAAATTTAAATCGTCCGAGTGTCTTGAATACATGACGGCGTTTCG
CTGTTTTGGTTGGGGACATTTTGTTTGTCATGATTAGTGTATCCCGAGTA
ATGCTGGCGGCGAGGCCGTGAAGCAACAGTGTAGTCGTTGAAAATGGCAC
TTGACATCGCAATAGGTGTAAGTGAAGTCTGTACTCGTGTGTTACCTACC
GTTATCCATTTCCACTCGGTGTGTCACCCTTCTTTTTTTTTGCTGCTTGG
ACGTGTCATATTCCATCGGGTGCAGCAAGGGGCGATCAGAGTTCAGATTT
TAGACCACCATCGCCCAACCCAACCCCTTGGCGAACCGCCCCAACCCTTT
TGACCGAGTAAAAGGGATGAATATAACGTCACTTAATTTTTGACGATATA
GTCTAACTCTCAAGTGTTGAAAAAAAAGAAAAAAAAATGGCCTGGGGGAT
TCCGTTCGATTTTTTAATTCTGGTCGCCACCCTGAGTGCACAGCGGGAAA
TTCCGTGGGTCATTATTTGTTGTGTAGAGCCAGTGAGTACCCTATTTATA
GCCATGCCGTCTTCGGTACCGATAATGACGCGTTAGTTCGCTTCGTTTTA
ATCTTGCTGTCTCTTTCATGTCTTGGCGCACCGTTCCTTTTGGGTTTTAC
TTGTCTTGAAAACCGCATTTTTTTGTAGTACGCCGAAGCCTTGAACCTGG
AATCGAGCACGGGTGGATCGGACGCCGATACTCTTCTGTCGAGGGCCGGC
GTCGTGGTGGATATGTTGGACTGGGCACTGCCGGAGACCCTCTACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig20839:1104..4251+

>mRNA_H-paniculata_contig20839.5417.1 ID=mRNA_H-paniculata_contig20839.5417.1|Name=mRNA_H-paniculata_contig20839.5417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig20839:1104..4251+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTACCTTATTGGGCGAGGCGCGAACGATACTGACAGAGGTGATCAC
CCGAGACACGAGCGGTAGGGGAGCAACCACTGCCCTTGCGCACCATGCCT
TGGGAAACGTGATCGGCAGCATTGTCGATCTACACCGACAGCATTGCCCG
ACCTCGTGGTCGAGCTGCCCGCTTCAATGCCCTAGTCCTGCGGAGTGCGT
CGAGCTATTGCGTGAATCCGGCAGCAGGTTACCTTATTGGGCGAGGCGCG
AACGATACTGACAGAGGTGATCACCCGAGACACGAGCGGTAGGGGAGCAA
CCACTGCCCTTGCGCACCATGCCTTGGGAAACGTGATCGGCAGCATTGTC
GATCTACACCGACAGCATTGCCCGACCTCGTGGTCGAGCTGCCCGCTTCA
ATGCCCTAGTCCTGCGGAGTGCGTCGAGCTATTGCGTGAATCCGGCAGGC
ACTTCAAGGAATCGCTCGCCATTTGCAATTGCCAGCCGACCCCTCCGGCG
GGCATGGACGAAGTTATGGTGCACTGGGGCGATGCAGAAGCCAGGCACTT
CAAGGAATCGCTCGCCATTTGCAATTGCCAGCCGACCCCTCCGGCGGGCA
TGGACGAAGTTATGGTGCACTGGGGCGATGCAGAAGCCAGCGCGATGCGC
ATCGCTATGGAGGGCAGCACGGTGGGTCGTGGGGATGGCGATACAGACAA
AGGGAGGCTACCCTGGCAGTCCCCCCCAGGCCCCATAGTACAGGAAGCCC
TGCGACTGTGCTCAAACGCGTGTAACAAGCGCGATGCGCATCGCTATGGA
GGGCAGCACGGTGGGTCGTGGGGATGGCGATACAGACAAAGGGAGGCTAC
CCTGGCAGTCCCCCCCAGGCCCCATAGTACAGGAAGCCCTGCGACTGTGC
TCAAACGCGTGTAACAAGTACGCCGAAGCCTTGAACCTGGAATCGAGCAC
GGGTGGATCGGACGCCGATACTCTTCTGTCGAGGGCCGGCGTCGTGGTGG
ATATGTTGGACTGGGCACTGCCGGAGACCCTCTACCCATACGCCGAAGCC
TTGAACCTGGAATCGAGCACGGGTGGATCGGACGCCGATACTCTTCTGTC
GAGGGCCGGCGTCGTGGTGGATATGTTGGACTGGGCACTGCCGGAGACCC
TCTACCCA
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