mRNA_H-paniculata_contig10853.541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10853.541.1
Unique NamemRNA_H-paniculata_contig10853.541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: D7FP46_ECTSI (SOR_SNZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP46_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 1.510e-137
Identity = 221/239 (92.47%), Postives = 227/239 (94.98%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDS--IPKKRKLEGKTETQLYGSSWE 713
            ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKF VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHAR+V +EIRMV  MDEDELFVFAKQI APFSLVQEVAK GRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS HAAERAKAIVQAT +YKDA+ILA+VSTGLGKAMVG+SDIKGDAVNFRGREGGG    IPKKRKLEGKTETQLYGSSWE
Sbjct:   76 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFQVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVQKEIRMVASMDEDELFVFAKQIQAPFSLVQEVAKNGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSAHAAERAKAIVQATTHYKDAKILAEVSTGLGKAMVGVSDIKGDAVNFRGREGGGSEGQIPKKRKLEGKTETQLYGSSWE 314
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BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A835YLJ1_9STRA (SOR/SNZ family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ1_9STRA)

HSP 1 Score: 375 bits (963), Expect = 6.870e-120
Identity = 196/238 (82.35%), Postives = 211/238 (88.66%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDS-IPKKRKLEGKTETQLYGSSWE 713
            ARIGHFVEAQILE+IE+DYIDESEVLTMADEDNHINK KF VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHAR V +E+RMV  MDEDELFVFAK I APF LV+EVA+TG+LPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS  A +RAKAIVQA  ++ DA+ILA+VST LG AMVGISDIK D VNFR REG  +  IPKKRKL G TE QLYGSSWE
Sbjct:  100 ARIGHFVEAQILEAIEIDYIDESEVLTMADEDNHINKNKFKVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARQVQKELRMVAAMDEDELFVFAKHIQAPFELVKEVARTGKLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSTDAVKRAKAIVQAVTHFNDAKILAEVSTSLGPAMVGISDIKSDPVNFRDREGASEGQIPKKRKLTGPTEIQLYGSSWE 337
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BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A6S9FRC6_HETAK (Hypothetical protein n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRC6_HETAK)

HSP 1 Score: 371 bits (952), Expect = 2.250e-118
Identity = 193/239 (80.75%), Postives = 212/239 (88.70%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGG---GDSIPKKRKLEGKTETQLYGSSW 710
            ARIGHFVEAQILE+IE DYIDESEVLTMADE+NHINK KF VPFVCGCRNLGEALRR+AEGAAMLRTKGEAGTGNVVEAVRHAR+V  EIR +  MDEDELFV AK++ AP+ LV+EVAKTG+LPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS   A+RA+AIVQA  NY + +ILA+VSTGLG+AMVGISDIKGD VNFR REGG    D +PKKRKL G TETQLYGSSW
Sbjct:   91 ARIGHFVEAQILEAIEADYIDESEVLTMADEENHINKNKFNVPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARTVMAEIRKLTTMDEDELFVAAKEMQAPYDLVKEVAKTGKLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSGDPAKRARAIVQAVTNYNNPKILAEVSTGLGQAMVGISDIKGDKVNFRDREGGEHDSDGVPKKRKLHGHTETQLYGSSW 329
[Close]
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S4E4M7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4M7_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.040e-116
Identity = 188/242 (77.69%), Postives = 214/242 (88.43%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGG-----DSIPKKRKLEGKTETQLYGSSWE 713
            ARIGHFVEAQ+LE+ EVDYIDESEVLTMADEDNHINK KFTVPFVCGCRNLGEALRRVAEGA+MLRTKGEAGTGNVVEAVRHAR+V ++I+M+  MDEDELFV AK++ AP+ LV++VA+ GRLPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS+   +RAKAIV+A A+Y D ++L + ST LGKAMVGISD+KGDAVNFR REGG      + IPKKRKL G TETQLYGSSW+
Sbjct:   92 ARIGHFVEAQVLEAAEVDYIDESEVLTMADEDNHINKNKFTVPFVCGCRNLGEALRRVAEGASMLRTKGEAGTGNVVEAVRHARTVQKQIKMLTTMDEDELFVAAKEMQAPYELVKQVAEEGRLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSEDPEKRAKAIVRAVAHYSDPKVLLETSTNLGKAMVGISDVKGDAVNFRDREGGAKEATAEGIPKKRKLHGHTETQLYGSSWK 333
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BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S3JZ24_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ24_9STRA)

HSP 1 Score: 366 bits (940), Expect = 1.070e-116
Identity = 192/236 (81.36%), Postives = 209/236 (88.56%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDSIPKKRKLEGKTETQLYGSSW 710
            ARIGHFVEAQILE+I  DYIDESEVLTMADED+HINK KF VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHAR+V  EIR +Q MDEDELF  AK +GAP+ LVQEVAKTG+LPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS + A+RAKAIV A  ++K+ ++LA VST LGK MVGISD+  D VNFR REGGG SIPKKRKL GKTETQLYGSSW
Sbjct:   86 ARIGHFVEAQILEAIGTDYIDESEVLTMADEDHHINKNKFKVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARTVQSEIRKLQSMDEDELFTTAKLMGAPYHLVQEVAKTGKLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSSNPAKRAKAIVAAVTHFKNPEVLAKVSTDLGKPMVGISDLDSDNVNFRDREGGG-SIPKKRKLSGKTETQLYGSSW 320
[Close]
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S3ZPL8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPL8_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.150e-116
Identity = 188/242 (77.69%), Postives = 214/242 (88.43%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGG-----DSIPKKRKLEGKTETQLYGSSWE 713
            ARIGHFVEAQ+LE+ EVDYIDESEVLTMADEDNHINK KFTVPFVCGCRNLGEALRRVAEGA+MLRTKGEAGTGNVVEAVRHAR+V ++I+M+  MDEDELFV AK++ AP+ LV++VA+ GRLPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS+   +RAKAIV+A A+Y D ++L + ST LGKAMVGISD+KGDAVNFR REGG      + IPKKRKL G TETQLYGSSW+
Sbjct:   95 ARIGHFVEAQVLEAAEVDYIDESEVLTMADEDNHINKNKFTVPFVCGCRNLGEALRRVAEGASMLRTKGEAGTGNVVEAVRHARTVQKQIKMLTTMDEDELFVAAKEMQAPYELVKQVAEEGRLPVVNFAAGGVATPADAALMMQLGMDGVFVGSGIFKSEDPEKRAKAIVRAVAHYSDPKVLLETSTNLGKAMVGISDVKGDAVNFRDREGGAKEATAEGIPKKRKLHGHTETQLYGSSWK 336
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BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A4D9CVF0_9STRA (SOR_SNZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVF0_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.670e-116
Identity = 190/240 (79.17%), Postives = 212/240 (88.33%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGG--GDSIPKKRKLEGKTETQLYGSSWEL 716
            ARIGHFVEAQILE+IEVDYIDESEVLTMADEDNHINK KF VPFVCGCR+LGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHAR+V REIR ++ MDEDELFV+AK I AP  LVQEVA+TG+LPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS    +RA+AIVQA  ++++ Q+LA+VST LG  MVGISDIKGD VNFR REGG  GD +P K++L G TETQLYGSSW +
Sbjct:  103 ARIGHFVEAQILETIEVDYIDESEVLTMADEDNHINKNKFKVPFVCGCRDLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARTVQREIRRLKTMDEDELFVYAKDIRAPLELVQEVARTGKLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKSTEPEKRARAIVQAVTHFRNPQVLAEVSTKLGVPMVGISDIKGDPVNFRDREGGVAGDGVPPKKQLHGATETQLYGSSWNV 342
[Close]
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S2XXS2_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS2_9STRA)

HSP 1 Score: 357 bits (915), Expect = 3.900e-113
Identity = 183/236 (77.54%), Postives = 205/236 (86.86%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDSIPKKRKLEGKTETQLYGSSW 710
            ARIGHFVEAQILE+ E+DYIDESEVLTMADEDNHINK KF VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGN+VEAVRH R V++EIR ++ MDEDELF +AK IGAP  LV+EVAKTG+LPVVNFAAGG+ATPADAA+MMQLG+DGVFVGSGIFKS + +ERAKAIVQAT +Y + +ILA+VS  LG+AMVGISD+K D VNFR REGG      KR+  G TE QLYGSSW
Sbjct:   77 ARIGHFVEAQILEACEIDYIDESEVLTMADEDNHINKNKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNIVEAVRHCRQVYKEIRRLKTMDEDELFTYAKDIGAPLELVKEVAKTGQLPVVNFAAGGVATPADAAMMMQLGMDGVFVGSGIFKSTNPSERAKAIVQATTHYNNPKILAEVSANLGEAMVGISDLKSDPVNFRDREGGDHGHHAKRQRLGATEAQLYGSSW 312
[Close]
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S3MJW7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJW7_9STRA)

HSP 1 Score: 356 bits (914), Expect = 9.800e-113
Identity = 185/243 (76.13%), Postives = 212/243 (87.24%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGD------SIPKKRKLEGKTETQLYGSSWE 713
            ARIGHFVEAQILE+IEVDYIDESEVLTMADE+NHINK  F VPFVCGCR+LGEALRR+AEGAAMLRTKGEAGTGNVVEAVRHAR+V + I+++  +D+DELFV AK + AP+ LV+ VA+ GRLPVVNFAAGG+ATPADAALMMQLG+DGVFVGSGIFKS + AERA+AIVQA  +YKDA++LA+VSTGLG AMVGISD++GD VNFR REGGGD       +PKKR + G TE QLYGSSWE
Sbjct:   83 ARIGHFVEAQILEAIEVDYIDESEVLTMADEENHINKFNFKVPFVCGCRDLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVQKGIKILTALDKDELFVAAKDMRAPYELVKYVAEHGRLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKSGNPAERARAIVQAVTHYKDAKLLAEVSTGLGVAMVGISDLRGDPVNFRDREGGGDMTVSGDGVPKKRPVVGATEQQLYGSSWE 325
[Close]
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Match: A0A7S1B961_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B961_9STRA)

HSP 1 Score: 354 bits (908), Expect = 7.090e-112
Identity = 183/236 (77.54%), Postives = 207/236 (87.71%), Query Frame = 3 
Query:    3 ARIGHFVEAQILESIEVDYIDESEVLTMADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANYKDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDSIPKKRKLEGKTETQLYGSSW 710
            +RIGHFVE+QILE+ E+DYIDESEVLTMADE NHI+K  F+VPFVCGCRNLGEALRR+AEGAAMLRTKGEAGTGN+VEAVRHAR+VH EIR +  M EDEL+V AK++ AP  LV++VAKTGRLPVVNFAAGGIATPADAALMMQLG+DGVFVGSGIFKS   A+RA AIV+AT +YKD ++L + ST LGKAMVGISDIKGD VNFR REGGG  +P KR+L G TETQLYGSSW
Sbjct:   92 SRIGHFVESQILEACEIDYIDESEVLTMADEANHIDKNAFSVPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNIVEAVRHARTVHSEIRRLTTMAEDELYVAAKELQAPLELVRQVAKTGRLPVVNFAAGGIATPADAALMMQLGMDGVFVGSGIFKSTDPAKRAAAIVRATTHYKDPKVLMECSTNLGKAMVGISDIKGDPVNFRDREGGG-MVPPKRELHGPTETQLYGSSW 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10853.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP46_ECTSI1.510e-13792.47SOR_SNZ domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YLJ1_9STRA6.870e-12082.35SOR/SNZ family-domain-containing protein n=1 Tax=T... [more]
A0A6S9FRC6_HETAK2.250e-11880.75Hypothetical protein n=5 Tax=Heterosigma akashiwo ... [more]
A0A7S4E4M7_9STRA1.040e-11677.69Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JZ24_9STRA1.070e-11681.36Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZPL8_9STRA1.150e-11677.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CVF0_9STRA1.670e-11679.17SOR_SNZ domain-containing protein n=3 Tax=Monodops... [more]
A0A7S2XXS2_9STRA3.900e-11377.54Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S3MJW7_9STRA9.800e-11376.13Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1B961_9STRA7.090e-11277.54Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10853contigH-paniculata_contig10853:1287..8152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.5
Seed ortholog evalue4.2e-102
Seed eggNOG ortholog2880.D7FP46
KEGG rclassRC00010,RC01783,RC03043
KEGG koko:K06215
KEGG ReactionR07456
KEGG Pathwayko00750,map00750
Hectar predicted targeting categoryother localisation
GOsGO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0009987,GO:0017144,GO:0034641,GO:0042816,GO:0044237,GO:0044281,GO:0046483,GO:0051186,GO:0071704,GO:0072524,GO:1901360,GO:1901564,GO:1901615
EggNOG free text desc.pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
EggNOG OGsCOG0214@1,KOG1606@2759
Ec32 ortholog descriptionPyridoxal 5'-phosphate synthase
Ec32 orthologEc-10_002450.1
EC4.3.3.6
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size2545
Cds size636
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.7935877-UTR-H-paniculata_contig10853:1286..31121622928788.7935877-UTR-H-paniculata_contig10853:1286..3112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10853 1287..3112 -
1691480620.3679528-UTR-H-paniculata_contig10853:1286..31121691480620.3679528-UTR-H-paniculata_contig10853:1286..3112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10853 1287..3112 -
1622928788.9074376-UTR-H-paniculata_contig10853:8069..81521622928788.9074376-UTR-H-paniculata_contig10853:8069..8152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10853 8070..8152 -
1691480620.4331698-UTR-H-paniculata_contig10853:8069..81521691480620.4331698-UTR-H-paniculata_contig10853:8069..8152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10853 8070..8152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928788.8098724-CDS-H-paniculata_contig10853:3112..32861622928788.8098724-CDS-H-paniculata_contig10853:3112..3286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 3113..3286 -
1691480620.3881454-CDS-H-paniculata_contig10853:3112..32861691480620.3881454-CDS-H-paniculata_contig10853:3112..3286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 3113..3286 -
1622928788.8415487-CDS-H-paniculata_contig10853:4278..43731622928788.8415487-CDS-H-paniculata_contig10853:4278..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 4279..4373 -
1691480620.3992953-CDS-H-paniculata_contig10853:4278..43731691480620.3992953-CDS-H-paniculata_contig10853:4278..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 4279..4373 -
1622928788.8605614-CDS-H-paniculata_contig10853:6198..63701622928788.8605614-CDS-H-paniculata_contig10853:6198..6370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 6199..6370 -
1691480620.4112449-CDS-H-paniculata_contig10853:6198..63701691480620.4112449-CDS-H-paniculata_contig10853:6198..6370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 6199..6370 -
1622928788.8751185-CDS-H-paniculata_contig10853:7496..76071622928788.8751185-CDS-H-paniculata_contig10853:7496..7607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 7497..7607 -
1691480620.4185357-CDS-H-paniculata_contig10853:7496..76071691480620.4185357-CDS-H-paniculata_contig10853:7496..7607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 7497..7607 -
1622928788.8858058-CDS-H-paniculata_contig10853:7985..80691622928788.8858058-CDS-H-paniculata_contig10853:7985..8069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 7986..8069 -
1691480620.4258618-CDS-H-paniculata_contig10853:7985..80691691480620.4258618-CDS-H-paniculata_contig10853:7985..8069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10853 7986..8069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10853.541.1prot_H-paniculata_contig10853.541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10853 3113..8069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10853.541.1

>prot_H-paniculata_contig10853.541.1 ID=prot_H-paniculata_contig10853.541.1|Name=mRNA_H-paniculata_contig10853.541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MADEDNHINKRKFTVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVV
EAVRHARSVHREIRMVQGMDEDELFVFAKQIGAPFSLVQEVAKTGRLPVV
NFAAGGIATPADAALMMQLGVDGVFVGSGIFKSDHAAERAKAIVQATANY
KDAQILADVSTGLGKAMVGISDIKGDAVNFRGREGGGDSIPKKRKLEGKT
ETQLYGSSWEL*
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mRNA from alignment at H-paniculata_contig10853:1287..8152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10853.541.1 ID=mRNA_H-paniculata_contig10853.541.1|Name=mRNA_H-paniculata_contig10853.541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6866bp|location=Sequence derived from alignment at H-paniculata_contig10853:1287..8152- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACGCATCGGGCACTTCGTGGAGGCGCAGATCTTGGAGTCAATCGAG
GTCGACTACATCGACGAATCGGAAGTGTTGACCATGGCCGACGAAGACAA
CCACATCAACAAGAGGAAGTTCACCGTGCCATTCGTATGCGGATGCCGCA
ACCTGGGCGAGGCGTTGGTGAGTCCCTGTAGCAATGTAATATGGTACATG
GAAGATGGTGACGGTCATGGTCGCCGTGGTGGTAATGGTCGTGGTGATGG
TCGTTTGGGAGTATTGGTTTTAGGTTCTGTGCTCAAAGTAAACGTTTCCG
ACATTGAACGTTGACGCCACTTTGCTCGTGTGGTTGTTCGTATATGTGTT
GGTGTGAGCGTGCTTTTCCTTTGTGAGCGTAGGGAGTCAGTCACCACGGG
CCTATCAACTACTGTATCATGGGCCAACGGAATTTTGCAATTATATTGTA
TCAATCGTATCAATATCACAAGCTTGGTGGGAGCAGACATCAATTGTCTA
AATAACCGATCATCCGCTCTAACTCTTGTTTGTTCGTTTCGTCAGCGGCG
TGTCGCGGAGGGCGCGGCCATGCTCCGAACGAAGGGAGAAGCGGGCACAG
GCAATGTGGTCGAAGCCGTTCGCCACGCGCGTTCTGTGCACCGAGAGATC
AGAATGGTGAGTGAGAGTTTTGGCCACCACTGTGCATGGGTTGGTTCGAT
TCTTCATTGACGCAGGGTATTGCTGTGCAGAAGCAAGGCAGCTTTTTGCA
TGGTTTGAATATTTGTTTGACATCTAAATGATCTATCGTCGCTTCCTCGC
CCCCCTCCCCTTCGCGAAAAATTTCAGCACCACGTTGAAGCGGGGGTTGC
TTCGTAGGAGGGGGAGGGAGGAGGGAGGGTGGGCGGGGTTGTGTTGAAGG
AATGATTACTCCGTTGGTTGTCCCTTGATTCCCTCCTCTTCTCGGTTCCT
TCCAAGTGGGTTACATGCATGACAGTGATAACGTTCTATTTACATATATT
GACAACAAGGGAACATAATTGATTGTACTTGACGAAGCTATGTTTATGAA
GTTATTCATGGCAGTTGATCACTGCACAATGACCTCCCACAACGTTTGCC
ATTGTTTTTCCCCATTTTTTTTAAATCAAAACTTTTGGTCTGTTCGGCCA
TCTTTTTTTTCTTTTTGTAAAATCGAGTCATTTCATCGATCGACGACATT
CGACGTGAGATTACTAAACATGACCACCTAAAGATTCTGAATCACAGCAT
CTGTCCCCTCGATAGGCTGTGTGTCGGCTGCAGTATTCAGTGTTATCAAC
CACCACCAGCAGCAACTATTTTCCATATATTTGTTGCATAGGCGGAGACA
TAGCACAATCAATATTCCCCGAGGACGAGGAATGAGGTATACGAGAAATT
TCTCCATTCCTCCAGAATTTTTCCGGGTACGACGGTATTCTCCTCCCGTC
GCCATATAGGTGCAAGAAAGGGGGAGCCAGACGTGTATGACCCATTAGTG
TCGACATGTGCAAATGACAGAGAGGCAATGCAGGGAGATGTGCTGTACAC
AGAGCCTGGCTCGACATTTCAACGACAAGGGCGCATCCAAGGTGTGAAAA
AATTATGTATTTGTACAGGGAAAAAAAATCTTCAACCGAATCTCTTTTTC
AAATACGGCAGCAGCACATGCTATCGAATCCATCATTTACCCCCTAATCA
CGACGAGTTTCTGGAGAAATTTCGGGGAATATCCAGTCCAACACCCTACC
CTCCATCGATCGTTGAATGACCCATTCAATAGGTGCAAGGCATGGACGAG
GATGAGCTGTTTGTGTTCGCTAAGCAGATCGGAGCCCCCTTCTCCCTGGT
CCAGGAAGTGGCCAAGACGGGACGCCTACCCGTAGTGAACTTCGCCGCCG
GCGGGATTGCTACCCCCGCGGACGCCGCGCTGATGATGCAGCTTGGTGTA
GACGGTGAGAAGAAAGAAGTGTCTCTTGAGTAGTTCTTGTTCCGCCGGTG
CCTTCTTGTGCCCTCTTCCTTTTTCATCCATCCGCACACCATTTATTATT
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTGTAAGACGGACCCGCTGTACATGGTAGTCACATCATCATCATCATCAT
CATCATCATCATTATTATTATTACTGTAATTATTATTAATAACAAGTCTC
ACCCCACGGGAGCAGGATGGGACGTGCCCCACGAACCCGCAGCGAGCGAG
CAGTGGGTGTTCGTTGCTCAGGTGATTCAACTGTTCGCCCCCGTTTTCTG
CACATATAGAACGTATGGTATCATCAAAGGTCGTACGTACTGCATACAGT
ACGGTGGGCTTTTTTGTGGATATTGTACAGATTTCTGATTCTACCCACAA
GAGCCAACCATTTACCACGTTGATTTCGTCGGGGTCGTTGAGTAATTCGT
TTCGATGATACGCGATGTTTCAATCTCTTACCTCTTACACAGACCTTCAC
TTCAACTGAATGGTGGATTGCTAATAAATGACTTATTGCACATACTGCGC
AGATCATACCTTAATTTCGGAACACAAAATATATTCTACAACATTTTTTT
TTTTAAATCCTTGGAAGGCTCCGGCAAAAATCTCCATCCGATGCTTCCAT
ACCGAAGTACGTCTACATTTAATTTTACATAACAGAGTTATTTATATTTT
TTTAACGGTTCGGCCGAACCAGGTAGGCAGTGTAGGGGTTGCACCCACTA
AAAGACCTCTGACTAGACTTCCAGCCATGCTCAGTTCACGAGCTACCCTA
CCCGTTTGGGCGTAGGTCCGTGGAGCTTAGAATCCATGTTCGCAAATTTA
GTATCTATGGTGGCAAATTTGATATCCATGTCTGCGCGCAGCTTCCCCAA
GTTGACCCTTTCCTGCTGTGATGGCAGTCTTGAGAGCCATCTTCGACGTC
CATCCTGTTCTGGGCAGCAGTAGTCTTCACACTGTCGACCCTTGTGGTGA
CTTCTCTCACCTCATCCGACCTATCTCCAGATGACGCTCCAGTCATCCTT
TTGTACCAAAACGTTAACCAAAATATAATTTTCAAGTTGTGGGTCAATTT
TTTCTTTTTTGTATCGAATTAAGCCTTTTAGTATTTAAGCTAACCCAATA
GATCTATAACGCTGGCGTACTCGTTGCCAGAAGTACAGGTGATACAAGGC
TTAGTCGATCCACACAAGATTAGGCCAGGTCCTAGTCTCTCAGACCTTGT
GTAGTGGAGGTGGATGGTGGATTGAGAAGAACTGGATTACAGGGGGCTGC
CCTTGGCAGATAACCCATTGGCACACGAAATATCTTATAACCAAATCTTA
CGTATGTACTGCCGCACTAGATACCGTTGACGGTACCCGGAAGCACCACA
ATAAATAATGGGGTTAGAGTTCCCCTCGTGAGAGTTCCCAAGTGCTGAAC
TACATCGAGGTATGATACGGCGCAAGACAGGACAGGGTGCCTGGAAAGTA
AGATACGAACCGACCGGCAAGGGGCGAGGCATGAGCCTCGCCTCCTAGGC
CAGGAGTCATCACCCGTCATCCAGATACTTTGTTTTTCGTTGCGGCGTGC
GCAGGCTTCCCCCCCGCAACCCCCAGCGTACCCCCCCGCCGTTGATCCTC
ATATTTCCGCTGCCTTGACTCAGCGACAAGTATTCGTTTTTCGTGTGTGG
CAAAAATGCGCCACTGCGTTCTCGTGCAGGCGTGTTCGTCGGGTCTGGGA
TCTTCAAAAGCGACCACGCCGCGGAACGCGCGAAGGCCATTGTCCAGGCC
ACCGCCAATTACAAGGACGCACAGGTGAACATATGTGACGAATTCATGAC
GCAGGGCAAAACCCGGGGGGTGACGTGCGAATTTTTTAGTTGTCCTGTAC
ATGGAGGTGTGGATAATGGAGATATGCAGGTGAGGGGGGCGAGGGAGATT
GGGTTCTGGAAACAGCCGGGTCCTGGTGGTAATTCGGCTACAAAAGTATG
TTGGAACAACAGCGTGCGTTCACGAAGTTGTGCTGGACCATGGCATATCA
CATTGTTGGCCTGCCCGTTGCACTTCCCCATGTCTACAGTAGTTGTAACT
CCAACAGAGCACCATTTTGCAGTCATCGAAATGAAACAAAGAGCATTACT
GTAGTCACTGAACGTGAATCATGCCTCAAGGGTGACGGCAGTGATGGCGC
TCGCCATTTGAGCCCGGCGTTTTTTTGTTGTCTCTGCACCCACGGAATTT
CGGTGTTTCAACCACGCATTACCCCTCGGATGTTTCATACAAAACGGGTG
CCCCTTCCGTTTATTGATCTAATTTTGCCGTAGAGTGTACAGAACCGAAG
TTTGGTTTCAGCTGTATCACCTCAACATCGGTGACAGGGAGGTTGTTACA
CGAGCGTTGTAGTGCCACCAACTGTGGCACGTCAGTTGACTTGAGAAGAG
ATTTTTGTGGTAGGATAAGGGGGGTATTAATTTCTTGTCATTTGTCATGT
GAAGACCAAGAATGTTTCACACACAGTACATAAATATACGCGAGTGCTAA
ATAATACTCATTTCCTTCTTGAAGCCGCCCTACCTAGCCCATGTCGTCCC
TGGTCGAAGAGATAAGAGATGCCCTGGTATTCTTATCCTCATAGGGTCAA
CACGTATGTATGTCATGTGGGTAGTGGTATCCTGTTGATCCTCCAAGCAA
CAAACCCAAATATGCCCCCCCCCCCCCCATCCCCCCTCCCCGCGCGCGCC
CATTTGTCGCCCTCCCCTCACCACCCCGGGCGCGCGCGACGCACCCTTCG
AAAACATGGAATTTAGATCCTTGCGGACGTGTCGACTGGACTCGGTAAGG
CCATGGTGGGCATCTCGGACATAAAGGGAGACGCTGTCAACTTCCGCGGT
CGCGAGGGGGGAGGGGACTCAATCCCCAAGAAGCGCAAGCTGGAGGGGAA
GACGGAGACCCAGCTCTACGGCTCCAGTTGGGAGTTGTAGGGAGGCGGGC
ACCGTTCGTTTTCAAGGATGTGTGCCGGTCGCAACAGTACGTATGCAGTC
TTTCAATATCTTCTTGTCCTTGCGCAGGGAGTAGAGCCGGGGCACCGACG
GACAGACCTGGGTAAGCGGTCGGAGGTTTCGGGGGGCAGGGTAGGGTGGG
TGGCCAAGGGTGCTCAGCACACGCAGAAGACGTGCTGGACATGTTATACC
GCAACCTGTTTTTCACGAACTGCTCAAGGCACCCGCGACGCTCCACTACA
TACCATGGTATATTCTATTTGTTTTTTGTGGCTGGGTGGCTGGGTGCATG
GGTGGGTGAATGGATGGATGGATGGGTAGGTGGACGGATGGATGGTAGGT
GGATGGATGGATGGTAGGTGGATGGATGAATGGGTAGGTAAGTCGGTGAG
CGAATGAGTGAGTGGTTGGGTTGGTGGGAGAGGGTCAACGAGTGGGTGAG
TGCTGTTTTATTGCACGCTTGAGTTTCCTGTCCCGCAAGCGAACTCGAGC
TGGAGCCCGAGCTCAAACCTGGGCACATATTGGTTTTGTTTACGGGACGT
TACTCTTGGCCCCCAGGATTTGTTCGTGTCTTCTCGCTTCGCATACGTGC
TTTCCCCCACTACTCTGGTCTCTGCGTATCCTGTTACCGAATGCGTTTTC
CACCGACCGGCGGCTCGCAAGGTCGTTGTTCGGGTGCAAATACTTACTGT
GCGAAACCCAGGAAAAAGGGAGGACTTGGTCAGTGTTGCTGTGCCCACGC
TGCGCTGGTGACACGCCCCCAAGAAGATGTGAATTTTTCGTTCTTTTCGA
AGGGATTTCATGTCTACAGAAGGAGCGCTGTATTGTTTTTTCGTCAGGGA
GAGTTCGATGGCACTAGAAAAGAAGACCGCGGTCAGCCATGTGTTGCATT
CTTCGTAGCGTTGACCATACTTGAACGGATAGCGAATATTTACTAGGACT
AGAGATACCCGAGGTTTCTCTGCAAATCCAGCAGTTGGGCAAATAACGTC
TTCGTGGTGTGGAGGATGGGTGGGAGAGAAGAAGCCATCCAAAAAGTAGC
CGCTCGAGTCGGCGATGGGAAGAGAGGGGCAGGAGTAAGCGAGTGTGCGG
CTTCGATCCGACGAGTGTTTTTGCTTGGTTGGTCATGTGTTGCTGTTGGA
TATTTTGTTTAGGTTTTGTAGAGGGTGGGTGGTGGTTGACTGGTATACCA
AATACACACACGCAAGTGAGAGAACCATGGAGAATCTGTCAACTGCGCGG
CGTAAATATGCGTACTGCAGTACCCTAAATAAATCAACACAAGCGTTCAA
ACAGAGAGACTGGAAGGTGTAAAAACCCCAAGAAATGCCACATCCCTCGG
GCAGGCTTGAAGAGCGCCTGCGAAACCTCTTCCCCCACGGGGTTTTCTCT
TGGTGTGGGGTTCCTGGAAAATACAAGTGAAAATAATGATCAGGACAAGA
CGCTTCAATATTGCGCATATGGATGCCTGATCGCAAGAAAATAAACTAGA
AGAAACTGCCACTTCCTTTTTGCCAACCTATGAAAAATACGGCTTATAAT
ACCATTTGTTATGGGGCAAAAAAACTGCAACAAGTTCGGGAAATAAAATC
ACGTTTTATGGTGCGGGCGAGCAGAAAAATATTCGGGCGTTTCGACCATG
TTTTTCAAGCATGACTAGTAATGTGGTTTAGTGCCTACGGCGGGGATGTG
TTGCCCTCCAGCTTAGGTGCAGCACATCAACTGCGTACTGTACTGCATGA
TGGGCCCACTCGGCTGTACGATGGCGAGCCAGGCGGTAGATACTCTAATC
TCGATTTGGAAATAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10853:1287..8152-

>mRNA_H-paniculata_contig10853.541.1 ID=mRNA_H-paniculata_contig10853.541.1|Name=mRNA_H-paniculata_contig10853.541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig10853:1287..8152- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACGAAGACAACCACATCAACAAGAGGAAGTTCACCGTGCCATT
CGTATGCGGATGCCGCAACCTGGGCGAGGCGTTGATGGCCGACGAAGACA
ACCACATCAACAAGAGGAAGTTCACCGTGCCATTCGTATGCGGATGCCGC
AACCTGGGCGAGGCGTTGCGGCGTGTCGCGGAGGGCGCGGCCATGCTCCG
AACGAAGGGAGAAGCGGGCACAGGCAATGTGGTCGAAGCCGTTCGCCACG
CGCGTTCTGTGCACCGAGAGATCAGAATGCGGCGTGTCGCGGAGGGCGCG
GCCATGCTCCGAACGAAGGGAGAAGCGGGCACAGGCAATGTGGTCGAAGC
CGTTCGCCACGCGCGTTCTGTGCACCGAGAGATCAGAATGGTGCAAGGCA
TGGACGAGGATGAGCTGTTTGTGTTCGCTAAGCAGATCGGAGCCCCCTTC
TCCCTGGTCCAGGAAGTGGCCAAGACGGGACGCCTACCCGTAGTGAACTT
CGCCGCCGGCGGGATTGCTACCCCCGCGGACGCCGCGCTGATGATGCAGC
TTGGTGTAGACGGTGCAAGGCATGGACGAGGATGAGCTGTTTGTGTTCGC
TAAGCAGATCGGAGCCCCCTTCTCCCTGGTCCAGGAAGTGGCCAAGACGG
GACGCCTACCCGTAGTGAACTTCGCCGCCGGCGGGATTGCTACCCCCGCG
GACGCCGCGCTGATGATGCAGCTTGGTGTAGACGGCGTGTTCGTCGGGTC
TGGGATCTTCAAAAGCGACCACGCCGCGGAACGCGCGAAGGCCATTGTCC
AGGCCACCGCCAATTACAAGGACGCACAGGCGTGTTCGTCGGGTCTGGGA
TCTTCAAAAGCGACCACGCCGCGGAACGCGCGAAGGCCATTGTCCAGGCC
ACCGCCAATTACAAGGACGCACAGATCCTTGCGGACGTGTCGACTGGACT
CGGTAAGGCCATGGTGGGCATCTCGGACATAAAGGGAGACGCTGTCAACT
TCCGCGGTCGCGAGGGGGGAGGGGACTCAATCCCCAAGAAGCGCAAGCTG
GAGGGGAAGACGGAGACCCAGCTCTACGGCTCCAGTTGGGAGTTGTAGAT
CCTTGCGGACGTGTCGACTGGACTCGGTAAGGCCATGGTGGGCATCTCGG
ACATAAAGGGAGACGCTGTCAACTTCCGCGGTCGCGAGGGGGGAGGGGAC
TCAATCCCCAAGAAGCGCAAGCTGGAGGGGAAGACGGAGACCCAGCTCTA
CGGCTCCAGTTGGGAGTTGTAG
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