prot_H-paniculata_contig2080.5408.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2080.5408.1
Unique Nameprot_H-paniculata_contig2080.5408.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length376
Homology
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BLAST of mRNA_H-paniculata_contig2080.5408.1 vs. uniprot
Match: A0A4D9D5V9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5V9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.970e-26
Identity = 74/218 (33.94%), Postives = 116/218 (53.21%), Query Frame = 0 
Query:   55 LPDHALANAFFSGFLDSIKVVSCLRLVSKRMMAVGSDSCKILDLHGM-RLSDDDLTKVTAAFPHIIHLDLSYCKGLGNCVGASLRACTDTLRTLSLRGVGASDETIRGLCEFRHLRELDLCQIVAGDSNKITPAGLEALVALDQLEKLGLAWNKGVTDDALDQLCGAMGG---LRELDLALCNKITARSLQALSLHSNLEVLSVQACRLIDDNGIEVL 268
            LP    A   +SG+ +S+ V++ L LVSK   A+ S     LDL  +  L D+ L+++ + F  +  LDLS+C  +G+ V  +L  C  TL  +SLRG G SD+ ++ +  F  L  +D+ +     S  +T  GL  L  L  L+++ LAWN+ +TD+ +  L     G   LR LDL+ C ++T    +AL +   LE LS+  C  I D  + +L
Sbjct:   93 LPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRNQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPTPGSKHLRVLDLSCCERLTDAVCEAL-VGQPLEALSLSGCPQITDQALRIL 309
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BLAST of mRNA_H-paniculata_contig2080.5408.1 vs. uniprot
Match: A0A7S4MPR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MPR9_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 2.970e-6
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 
Query:  201 LGLAWNKGVTDDALDQLCGAMGGLRELDLALCNKITARSLQALS--LHSNLEVLSVQACRLIDDNGIEVLTTACPNLVSLDVAHLP 284
            L LA  + +TDDA+  L      L EL+L  C+ +T RSL  LS    S L+ LS+Q C+LI   G+++L  AC  L   D++  P
Sbjct:    3 LSLANCENLTDDAVSHLAEKCSQLEELNLNGCSLVTDRSLMELSQSFASTLKSLSIQECKLITTEGLDLLANACTLLQQFDISESP 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2080.5408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4D9D5V9_9STRA6.970e-2633.94Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4MPR9_9EUKA2.970e-639.53Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 195..220
e-value: 170.0
score: 4.9
coord: 221..246
e-value: 0.99
score: 18.4
coord: 272..313
e-value: 160.0
score: 5.1
coord: 115..143
e-value: 620.0
score: 0.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 224..244
e-value: 1.4
score: 9.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 50..178
e-value: 1.9E-11
score: 45.5
coord: 179..293
e-value: 8.5E-20
score: 72.9
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 139..289
coord: 91..217
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 90..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2080contigH-paniculata_contig2080:5890..15641 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2080.5408.1mRNA_H-paniculata_contig2080.5408.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2080 4733..21300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2080.5408.1 ID=prot_H-paniculata_contig2080.5408.1|Name=mRNA_H-paniculata_contig2080.5408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=376bp
MYDGEAADERGLGNDDRANAFLCDLDLEEEEEDEDEDDDEVDDDDDDFGL
DLMDLPDHALANAFFSGFLDSIKVVSCLRLVSKRMMAVGSDSCKILDLHG
MRLSDDDLTKVTAAFPHIIHLDLSYCKGLGNCVGASLRACTDTLRTLSLR
GVGASDETIRGLCEFRHLRELDLCQIVAGDSNKITPAGLEALVALDQLEK
LGLAWNKGVTDDALDQLCGAMGGLRELDLALCNKITARSLQALSLHSNLE
VLSVQACRLIDDNGIEVLTTACPNLVSLDVAHLPLLTGRTTCRRRSVPLL
PPNTNTLCGIARNDITEVVSPCKTTCAGLTLETPREGENNLTARGNISRE
TKAGHTRCVNDCDNIAAEHNNLKCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf