mRNA_H-paniculata_contig20767.5396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20767.5396.1
Unique NamemRNA_H-paniculata_contig20767.5396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20767.5396.1 vs. uniprot
Match: D7FN83_ECTSI (Calcineurin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN83_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.280e-16
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   28 TFTELEMLGLRFLWEAMSHGG-AVTEESLFTFDDVYGDGADCLQAGAVLRALSPDGQQE-----PAGAGDLLLAARALK 246
            +F + E L LR LWEAMS GG A+T +SLF FDD +G+G DCL A AVLRAL+P G++E     PA  GD L  A ALK
Sbjct:  150 SFDDTEALALRALWEAMSGGGGAITADSLFAFDDSFGEGTDCLHAAAVLRALAPSGRREAHACEPAMMGDFLRVAGALK 228
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BLAST of mRNA_H-paniculata_contig20767.5396.1 vs. uniprot
Match: A0A6H5L0K3_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.560e-15
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   28 TFTELEMLGLRFLWEAM-SHGGAVTEESLFTFDDVYGDGADCLQAGAVLRALSPDGQQE-----PAGAGDLLLAARALK 246
            +F + E L LR LWEAM   GGA+T +SLF FDD +G+G DCL A AVLRAL+P G++E     PA  GD L  A ALK
Sbjct:  816 SFDDTEALALRALWEAMCGGGGAITADSLFAFDDSFGEGTDCLHAAAVLRALAPSGRREAHACEPAMMGDFLRVAGALK 894
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20767.5396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN83_ECTSI3.280e-1656.96Calcineurin A n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5L0K3_9PHAE2.560e-1555.70Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20767contigH-paniculata_contig20767:385..3090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20767.5396.1prot_H-paniculata_contig20767.5396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20767 385..3090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.673568-CDS-H-paniculata_contig20767:384..4611622929542.673568-CDS-H-paniculata_contig20767:384..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 385..461 -
1691480906.0990036-CDS-H-paniculata_contig20767:384..4611691480906.0990036-CDS-H-paniculata_contig20767:384..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 385..461 -
1622929542.6913128-CDS-H-paniculata_contig20767:814..9321622929542.6913128-CDS-H-paniculata_contig20767:814..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 815..932 -
1691480906.1096077-CDS-H-paniculata_contig20767:814..9321691480906.1096077-CDS-H-paniculata_contig20767:814..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 815..932 -
1622929542.7101715-CDS-H-paniculata_contig20767:3018..30901622929542.7101715-CDS-H-paniculata_contig20767:3018..3090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 3019..3090 -
1691480906.123572-CDS-H-paniculata_contig20767:3018..30901691480906.123572-CDS-H-paniculata_contig20767:3018..3090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20767 3019..3090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20767.5396.1

>prot_H-paniculata_contig20767.5396.1 ID=prot_H-paniculata_contig20767.5396.1|Name=mRNA_H-paniculata_contig20767.5396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MREKAMREDTFTELEMLGLRFLWEAMSHGGAVTEESLFTFDDVYGDGADC
LQAGAVLRALSPDGQQEPAGAGDLLLAARALKARNDMI*
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mRNA from alignment at H-paniculata_contig20767:385..3090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20767.5396.1 ID=mRNA_H-paniculata_contig20767.5396.1|Name=mRNA_H-paniculata_contig20767.5396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig20767:385..3090- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAAAAGGCGATGAGAGAAGACACGTTTACGGAATTGGAAATGTT
GGGTCTGAGATTCCTCTGGGAGGTGAGGTTTTTCACAAACAAGGGAAGGC
TGAATGTCGCGATAGTTGTATGTGAAATGAGGCTTAGCCTTGTCTTTCAC
AGGCGTCCATCCTTTTTTTCAATGATCCGGTAAGGCTGAAAGTAGGCTCG
GAATAGTTTGATTATTTCTATATTTTATCCGAGTACTTTGGTGATAATGA
CGCTTGTTGTTCGATTCTTCGAAGGATTTTTGCGTTCTCCGTCCTGTCCA
ACGACAACGACATCATCCCCCGGCGAGTATATGTATGTGTTAGTGGCCTA
AAAACGAGTGTACTCACAAGAAATGTTGTGGCCCTATGCCGCCGTTTTCA
TCATAATTACCCCGGTGCCCCGTGTTTTCGCCGTAGTGTGATCTCTCTAC
TCCATGGCGTGTTTGCTTGCTGTGGTGCGCATTTGGGTACATGAGTGTGT
TGCCCGTCTGTTCAGTGGGGAAGGGCATGGCATATTTTGGTGTGCTGTAG
ATGTTAGGATAGACATCGAGTTCCTGTTGAGTAGTAGGATGCCCCCCTGG
CCCTCCCCCGCGTCGAGTGTCACGGTGACATATCTCCGATGACCTTATTT
TCTAAGATCTACTTGTACTCGCTAGAGCATATGTTATCGTACAACTTCGG
TGATTGATCTTTGATGACGTCGTGTAGTCTGGTATGATCTGTTGCAGGGG
ACGGAAAATCTGCTTTCCGTTCGGGTGAAGCGGGCGATTGCATACCAAGG
ATGAAGCGAGGTTGAAGTTGGACGCATCGACTGTCGACTCTTTCGCAATC
TTTGGAGCATTTGGTAGCAATTAATACACTACCTTTGTTTCATAAGTCTG
TCTTACAATGGTATTTTGTAAAAAACTTCCACAATTTTGGGTTTCTCGAA
AAATAGAAGCATATCATTCCGAAAGCCTACACGTTCAGCTTGCATGTAGA
TAACTTCAAAAAGGTTGTTTAATTCGAAATGGTTGAGATCCGAATATCCC
AACACTTTTTTTTTCGAGAGTGGTAAATTTTGCAAAAACGGCCCAACAGG
CCGAAATCGGCTGAAAATCGTGGTTCATGGTTGATAAAGCCTCAAGGAGA
CCTCCCATTAAGACATGGTTTGCTGTGTTGTATCCCTTGGTGTTTTATGC
TACGTAGTACACTAACTTCATTGTTCATTACTGCCATTCTCCCCATCAAT
CCGCCCATTAAAGGCCGCGTCGTAAGCGGCGCTGTCAATCGGGACCAGGT
GGCCCCAAAGCCCCTCACGCTGCCTTTTCCTGCTCCAGATATGCCCAATG
TCTAAACCATTTCCCCAGCGCTTTCAACACTTGGTTGTACCGCTTGAAGA
GGCTCTTGCTAGACCAACTCTGAAGTATCCGCGTCATTCTGGCCGCGCAT
ACTAGAGTGTGGAGGGGGCGCTCCCCTACGTTAGATGCCCTTGTAAAGGG
GGTTAAGATCATGTACCGTCAGTATGACGAGGATACCTTAGAGCTGGTTT
GGCAAGAGCTTCTTCAGGTGGTACAACCAAGTGTTGAATGCGCTGGGGAG
AAACGATTTAGACGTTGGGCATACCGAGAGCAGGAAAATACAGCATGAGG
GGCTTTTGGACTACTTGGCCCTGATTGACAGAGCCGCTTGCGACGCGGCC
TCCAATTGGTGGATTGATGAGAGGGTGTCAGAAACGAACAATGAATATAG
TGTACTATGTGGTATGAAACACCAAGGGATACAACACGGCAAACCATTTC
TTAATGGGAAGTCAGTCTCCTCGAGACCTTATCAGCCATTAACCATGGTT
TTCAGCCGATTTCGGCCTGTTGGGTCGTTTGTGCAAAATCTGCCATTTCC
GAAAAAAAACGTGTTGAGATACTCGGTTCTCAACCATTCGAATTAAAAGA
ATCTGTGAAGATATCTACATGCAACCTGAATGTGTAGGCTGTCGAATTAT
ATGCTTTGTATTTTTCACGAAACCCAAAATTGCAAAAAAATATTCACAAA
ATACCGTTATAAGACAGACTTATGGAACAAAAGAGGTAGTAAAACGTTTT
TTAATCACAATCTTCGTGAACGTTCCTTTCAACTTCGATTCCGCTGTACA
TACTCTAGGCGATGTCTCATGGAGGCGCGGTGACCGAGGAATCTCTGTTC
ACGTTCGATGATGTCTATGGAGACGGTGCTGACTGTCTGCAGGCCGGGGC
TGTGCTCAGGGCCTTGTCACCTGACGGTGAGATCTTACCTTCCAAGGCAC
CTTCGTTCTGCCTTGCGTCGTCCAATACCTCGGTGTAGCTCAGCACTTGG
GTATTCTCACGAAGGGAACTCTGACCCTATAGCTCGCTCGATGCGGGTTC
GTGGGATACATCTCATCCTACTCGCGTGGGGTGAGACTTGTATTGCGAGA
AGAAGGAGAGATATTCTGTAATATATGACAAGTACTCTAATCCTCCGTGA
CAAAAATATACGAACATAATTTCGGACGTTTAGTTTCATGCTGGTGGGCT
GCATCCTTATAATAGCAGTCTTGTTAACCTTCGCTTGTGTTCGTGCTGCT
TTCGTCCCTTTCTTTTTTTCTGTTTTCAGGGCAACAGGAACCAGCGGGAG
CCGGAGACCTGCTGCTTGCAGCAAGGGCGCTTAAGGCCCGTAACGACATG
ATCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20767:385..3090-

>mRNA_H-paniculata_contig20767.5396.1 ID=mRNA_H-paniculata_contig20767.5396.1|Name=mRNA_H-paniculata_contig20767.5396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig20767:385..3090- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAAAAGGCGATGAGAGAAGACACGTTTACGGAATTGGAAATGTT
GGGTCTGAGATTCCTCTGGGAGATGAGGGAAAAGGCGATGAGAGAAGACA
CGTTTACGGAATTGGAAATGTTGGGTCTGAGATTCCTCTGGGAGGCGATG
TCTCATGGAGGCGCGGTGACCGAGGAATCTCTGTTCACGTTCGATGATGT
CTATGGAGACGGTGCTGACTGTCTGCAGGCCGGGGCTGTGCTCAGGGCCT
TGTCACCTGACGGCGATGTCTCATGGAGGCGCGGTGACCGAGGAATCTCT
GTTCACGTTCGATGATGTCTATGGAGACGGTGCTGACTGTCTGCAGGCCG
GGGCTGTGCTCAGGGCCTTGTCACCTGACGGGCAACAGGAACCAGCGGGA
GCCGGAGACCTGCTGCTTGCAGCAAGGGCGCTTAAGGCCCGTAACGACAT
GATCTAGGGCAACAGGAACCAGCGGGAGCCGGAGACCTGCTGCTTGCAGC
AAGGGCGCTTAAGGCCCGTAACGACATGATCTAG
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