mRNA_H-paniculata_contig20764.5395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A6H5L328_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L328_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 3.660e-17 Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 1 MPGGREGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPKGKR 201
+ GG AS S+L F WI+PLV LAY +PLE +HL+PLP++S T LL RF AWG+QLAKPKG+R
Sbjct: 28 LAGGSMKASPCSRLFFAWITPLVNLAYARPLEPEHLFPLPASSETAGLLDRFRDAWGQQLAKPKGER 94
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A059AIE4_EUCGR (ABC-type xenobiotic transporter n=11 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AIE4_EUCGR) HSP 1 Score: 56.2 bits (134), Expect = 1.550e-7 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 22 ASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPKG 195
ASCLSKLTF+WI+PL++L Y KPLE + + L S L +F AW +++ KG
Sbjct: 207 ASCLSKLTFSWINPLLRLGYSKPLELEDIPSLVSEDEADLAYKKFAIAWDSVVSEQKG 264
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A8K0A4K2_BRALA (ABCC1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A4K2_BRALA) HSP 1 Score: 53.1 bits (126), Expect = 1.900e-6 Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 4 PGGREGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQL 180
P E +S LS++TF W +P +QL Y +PL A LYPL T++ L+ F+ W +L
Sbjct: 226 PSPEESSSFLSRMTFWWFTPFLQLGYKRPLTATDLYPLRKEDTSQHLVPTFHHLWQNEL 284
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A067GIS7_CITSI (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GIS7_CITSI) HSP 1 Score: 52.0 bits (123), Expect = 4.760e-6 Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 1 MPGGRE-----GASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPK 192
+PGG AS LS+ +F W++PL+QL Y KP+ K ++ L + T++L+ +F+ W E+ + K
Sbjct: 246 LPGGEHVCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSK 314
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A842YXY5_9ARCH (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A842YXY5_9ARCH) HSP 1 Score: 50.8 bits (120), Expect = 9.480e-6 Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 16 EGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQL---AKP 189
E A+ S+LTF+W++PL+Q Y + L+ + L+PL T TTK F AW +L AKP
Sbjct: 57 ETATIFSRLTFSWMTPLMQFGYKQYLKEEDLWPLAHTDTTKTTGDAFGRAWAYELEHRAKP 117
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A484K049_9ASTE (Uncharacterized protein (Fragment) n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484K049_9ASTE) HSP 1 Score: 50.4 bits (119), Expect = 1.680e-5 Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 31 LSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPK 192
LSK+TF W++PL+QL Y +PL + ++ L + T+ L +F W E+ KP+
Sbjct: 235 LSKITFAWMNPLMQLGYKRPLTERDVWKLDTWDRTETLYDQFQKCWAEESRKPR 288
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A328DGQ3_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DGQ3_9ASTE) HSP 1 Score: 50.4 bits (119), Expect = 1.710e-5 Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 31 LSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPK 192
LSK+TF W++PL+QL Y +PL + ++ L + T+ L +F W E+ KP+
Sbjct: 235 LSKITFAWMNPLMQLGYKRPLTERDVWKLDTWDRTETLYDQFQKCWAEESRKPR 288
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A2Z7CYE6_9LAMI (ABC-type xenobiotic transporter n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CYE6_9LAMI) HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5 Identity = 22/59 (37.29%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 16 EGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPK 192
A+ LSK+TF W++P++QL + +PL K ++ L S T+ L F +W +L +PK
Sbjct: 1304 RSANILSKITFAWMNPIMQLGFKRPLTEKDVWKLDSWDKTETLNDLFQRSWALELQRPK 1362
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A7J7ID34_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ID34_9RHOD) HSP 1 Score: 48.9 bits (115), Expect = 5.980e-5 Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 1
Query: 22 ASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAKPK 192
AS S++TF W+S L++L KPLE + L+ LPS L RF AW + ++ K
Sbjct: 65 ASLFSRVTFKWLSDLLELGRTKPLELEDLWALPSIDDPSRLSARFCTAWNRRCSRRK 121
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Match: A0A1Q5TJV8_9EURO (Oligomycin resistance ATP-dependent permease YOR1 n=2 Tax=Penicillium TaxID=5073 RepID=A0A1Q5TJV8_9EURO) HSP 1 Score: 48.5 bits (114), Expect = 8.160e-5 Identity = 21/61 (34.43%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 4 PGGREGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGRFNAAWGEQLAK 186
P GAS LS +TF W+SPL+++ Y++PL+ + ++ + T +L R +AA ++A+
Sbjct: 70 PSREHGASFLSAITFQWMSPLMRVGYLRPLDLQDIWTVNPKRTVDVLSDRLDAALENRIAR 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20764.5395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20764.5395.1 >prot_H-paniculata_contig20764.5395.1 ID=prot_H-paniculata_contig20764.5395.1|Name=mRNA_H-paniculata_contig20764.5395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp MPGGREGASCLSKLTFNWISPLVQLAYVKPLEAKHLYPLPSTSTTKLLLGback to top mRNA from alignment at H-paniculata_contig20764:242..448+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20764.5395.1 ID=mRNA_H-paniculata_contig20764.5395.1|Name=mRNA_H-paniculata_contig20764.5395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig20764:242..448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20764:242..448+ >mRNA_H-paniculata_contig20764.5395.1 ID=mRNA_H-paniculata_contig20764.5395.1|Name=mRNA_H-paniculata_contig20764.5395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig20764:242..448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |