mRNA_H-paniculata_contig2076.5394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2076.5394.1
Unique NamemRNA_H-paniculata_contig2076.5394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2076.5394.1 vs. uniprot
Match: A0A6H5KX83_9PHAE (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX83_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.290e-23
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 MPTLVFRERRLLLGGDEFMVPYASVAIGRTLWVVFLVVTLIVSGSYMFDAQCTDAGYAAFFYEVVSITVGVISIIVEFRIAVVSTYGTII 270
            MP LVFR+RRLLLGGDE M+PYA+ A GR +W+VFL+V L ++   +    C D GY  F YE +SI  GV+S++VE +IA  +TYGTII
Sbjct:    1 MPGLVFRQRRLLLGGDELMLPYATSACGRAVWMVFLLVGLALASGMLLGGDCHDVGYVVFVYEALSIVAGVLSLVVECQIAKAATYGTII 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2076.5394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX83_9PHAE4.290e-2355.56Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2076contigH-paniculata_contig2076:15214..19716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.555446-CDS-H-paniculata_contig2076:15213..154481622929542.555446-CDS-H-paniculata_contig2076:15213..15448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2076 15214..15448 -
1691480906.069355-CDS-H-paniculata_contig2076:15213..154481691480906.069355-CDS-H-paniculata_contig2076:15213..15448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2076 15214..15448 -
1622929542.5702646-CDS-H-paniculata_contig2076:19672..197161622929542.5702646-CDS-H-paniculata_contig2076:19672..19716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2076 19673..19716 -
1691480906.0784771-CDS-H-paniculata_contig2076:19672..197161691480906.0784771-CDS-H-paniculata_contig2076:19672..19716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2076 19673..19716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2076.5394.1prot_H-paniculata_contig2076.5394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2076 15214..19716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2076.5394.1

>prot_H-paniculata_contig2076.5394.1 ID=prot_H-paniculata_contig2076.5394.1|Name=mRNA_H-paniculata_contig2076.5394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MPTLVFRERRLLLGGDEFMVPYASVAIGRTLWVVFLVVTLIVSGSYMFDA
QCTDAGYAAFFYEVVSITVGVISIIVEFRIAVVSTYGTIIGM*
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mRNA from alignment at H-paniculata_contig2076:15214..19716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2076.5394.1 ID=mRNA_H-paniculata_contig2076.5394.1|Name=mRNA_H-paniculata_contig2076.5394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4503bp|location=Sequence derived from alignment at H-paniculata_contig2076:15214..19716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACCCTCGTGTTTCGGGAGCGGAGGTTGCTCCTGGGAGGGTGAGC
AAGGATAGAATAACCGCCAATATAATGTACTGTGGTAGTACACAGCAGGC
AGTGGTTGCTGGTGTACTCGATTCTTCCTGTTGGACCTGTTAAAAGACTG
GATTGTGACAAGTAAGACGGGAGAGAATGGTCACCGAAACTCGAAAGTGT
TATCGCATCACGATAACTATCTAAGACACCAGACCTTGTTTCTCGACAAG
GCACGCAAATCATTGACCACCGTACCGTACCATTGGGCCCCCAGTCTAAC
GCATAGATAGTCATGCTGTAATTATTGTATTGCTTGCTTGTTTGAGCTCG
ACTCATCATGTACAAGAGTAGTCAGGGCTGTTACTCATTATTCGGTCTAA
GAAAGCTTTGGTTAGGGGGGAGTTACACATATTTTGAGTCAATCCTATTA
TAGATGTATTGCTGCACAGTGCAATCAGTAGAGTTTATAAACGGTACGGC
GTCAGCTACTGGTGTGTTCTGAACAATCCAGCCATCAGCCGAGCAGTACC
ACAGGGGTGTGCCTCACTTTGCTTGAAAACACCGAGATTATGTAGGTACA
CTGTGAGAGCAAGTTGTGACGAGCGACGGCACAAGGGACACAGAGCTGCA
CATGGTTATTTCTTGGATGCACCCAAATGAGAAAACGTATCACTTGCAAC
GAATGCAACACGAATATAATATGAGAAAATTGGAATGAATACTGTCAAGA
GAAGCGATCTGGGTTAATTTTTTTGTTATTTCGCGACCCAAAAAGAAAAG
AATCAAATCCCCATTTTTTCCAGGTGTCGTGCCGATGCCTACGTAGAATA
AGTTGTTTTGATATTAATATGTATTTATATAAGCAGCTCATCTTTTGACG
GGTAATGATTGCAGCATGGATACTTATACCACTAAATTTTTACACGAAAA
AAACTAGGAAAGTTTCAAAACAGAAAATAGAGTGCTTCAGGAAAAAATTG
AGAACAATCGATTTTACACTATATGATTAGGGGAATGCGCCTGCGCTCGA
AATTTTGCCACTGCGCTCGCAAATCTGATGTAAGGCTTTCCTAGCTGGGG
TTGCGAATACGACATACCAAGCGGCGCTTGACGCGTCCCAGTAGTTCAAA
AGTTGGACTGTTTCTAAGATGGCCAAGAAAGGCTTCAAAAGAGTGAGCTT
ACACGATCGATATAAGACCCAAGATCGAGCTGATCTTCGAACAGGACAAC
AACAGCCAGTGTTCTGCGAAAGCTTTGCCAGCTCAGCAGGAGTAACCGAG
AAGGGTTCAGGTCGTGATGGAGAAGCATCTTCCATCTTATCGTGGCACTG
TTGTCTGTCCTATCTGTCTGTCTATGTGTGTTCGTGGGTATCACAGCCGC
GCAGTGTAGCAGCGCCCATTTACATATTCTTGCTGCAGTTGCGTGATGAC
TATTGGCTATTCTGTGTAAGGATGATGAAAAAAATGACGCCAGCGTTTAA
ATTCAAATACGGTCGTGGCTGCATTTGATTGGTTGATTAGGGTTGAACCC
CATAAAGTTGTGTTTTTATGGAACACGATCTCCGACGGAGATCACCCAGG
TCGCTTCTCCAAGTTGTATCTGTTTATGAGTTGAGGGAAAGTGTCCATGT
GATGCGAATGATATGCATTGTACTCGATATACCATGGAGCATTGAAAAGC
TCGGGCAGAGAGAGTATTCAATCTGTACAGTACCATCCGGAAAATAAAGA
GGACCTGCATGTGTGACTGACTGTTCGCCGGGTATACGACCACCCGGTGA
ACATCTGTAGTGATCATTCATAGACTTGTAAACTACGAATACATTTCGCT
GTCATTTTCCAGCCAAAAAAATGAAGTAATAGAGGTCCTGTCATTATTAC
CAATATGTACTTATAGCAGGAGTTGGCATAGCTTTGCGCTCCACGGCGAC
AACAGGCAGCATTTGGTTGGAACGCGAAGCATAAACCTCATCATGAGTGG
AATGATTGTACAGCGTGTGTGTGCCGCACACAGCCACACGCCAGAACATG
TAAACAACACCACGATGGCTCTTACGAAGCTGTTTTGACACCCGCAGACA
GTGCAGACAGCAGCAACATAACATGTTCAAAGATGGGTCGCATAAATACG
TTTGTTTCAGTTCTGAAAGCATCAACCATTCGCCGCGCCGCTATCGTTGT
CGTCCTCGCTGTCGATATTACGCATCTATTGTGCGCACGCAAACACAACC
AGACTAAAAAAACGTCGTCCCGAAAAACACACGTTTTGCATGACCCCCCT
TAACCGCCGCAGGGATCCTGTAGGGATCCTATCACCCCAAACCACTTGGC
TGGTGTCTAGAACATTACACGCTTTTTACTGGCCAGTGGGAGAATAAACG
TGCATGATTGGCGTGACCCTGTGTACAATCGGTTACCATCTTCCAGCCCC
ACGACGTTGGAACTCAACCCCCCACCCTCCTTTCCTCGATGGCTTCGCAG
CGGGACTGTCAGGTTTCTTATTTATTCTGTCGGGGTTCGGTGCCACAGGT
TCAAAAAGCGTCTGCGCCCCGGCGATACCGATACCTTCATTGGGTTTGAC
GGTATTCTCCCCTCAGATATTCGTCATATTAGAGAGCTCTGACACACACA
CACATATATATGCATATTTTTTCACAAGCGTTCATGCGTTCCACGTGTTG
ACCTCCATCGACAAACGCAAGATCGACGACTTGATGACATTCGTTCTCTC
CTTTTCTCCATATCTTGGCTGCAGCTGGAGAGCTGGATAGCAAATTTCGC
CGTGTGTGGTCTTGCTACTACTGCACTGTACTGCACTGTGTTGTACTCTA
GCGGCCCACTGAGATAAAGAACTTTGAATCGAACATAAGTTGCTTCCCCC
AATATCGTTTTCTGGGACGCAGATCTAGCTAACTTTCTTTAATCGCCATG
TCTGACGTCGGGTGTTCCTGTTGTGTGCTTTGCGTCGGCCGCTCGCGTGG
ACCTTTTTATGCGGCGTGACTGTCATTCGGTACCAATGGAATTTGACCGC
TTGAAATACCCGTCTTGGTGAAACTGTTTCATCCCCAGGAGAACAAGAAG
AAAATCTTCACTTCTTCCTTACACCGTACCGGATTACATCGCCTTGGATT
TCGTATTCCGGTTCTCCGCAAGTCCGAGGGCCTTGGTCCTTTTTTTTTTT
CGTGCTCAATCGGCCCTATGTGTGGGGAGTTCAGTTTCTTTTCTCTTGTC
AAGATACGGGCACACATTTAGCGGAAGACGTGAGTCCAATCTCTTTGGGC
GAATTTTCTCTTTTTCTAATTAATACGAGTCTTCAGTTGTATAACCGGTG
CAATCTTTCTTGCTAGCATGGCCATTTTCTTAAATTGTCTGCAATTTTGT
GCTTGACGTGAGTCTTAATTTCTGAGAGCATTAAAAATTTTCTTTTTGTT
TGTAGACATGACGGATTTCGGTCTTCAACTTGCACTCTTTCTGCGCTGAA
ATATTGTGTCGTATATCCATCCCCTGAGCACAAAATAAAGTTGGTCGGGT
GTGTATAATGAGCTCGCCTTTCTTCATGTATCTCTCCCTTCATCCCTCCC
TCCCTCTCTCACTAGCTCGAGAGTCATTTCTCAGTCCATCCCTAAGGTAC
CCTCTAATGAATAACTATTTCGCAACTGCATGTAGTCGGCCAGCCTAGAC
TAGAAGCTTGATCATCTTCTTACGCCCTCTGTAACTTGAAGCACGTCTTT
TTTCACTCTTGACTTTGAGGCAATGCACCAAGTTTGTGGTGGATTGATAC
TGGTTGGCATATTAACGTGAGATCGATCCTCGACAGAACAACCCCTCCTC
TGATGATTTGTTGGATAATGTTTTTGGGGCATGTAATGCAGAGGATCCAC
TTGGTTTTTTCACTCTTCTGTACAGTAAATTACCAAAGTCATCCAGGGTC
AGAGGCAGCTAAGAAAATTATTCCGGAAGCGGGATACAAAATGCCACCGT
ATGTTGTATAGGGGACTTTGGTTCATGAACCCCAGGAACTTCAGGAACTT
CAGGAACATATATATAGGAACGAAACAGTCCGCGTGGATTTGCGGAGATG
GGCGGAATTTCCCGTTTTGCTAAAATAGTTCGTCTCGAACATCGCTAATG
TTGTTCAGTAGCACATTGAGTGGATGTATTTGTGATTCAAGCGAAAGTTT
GCAACCAATGTGTTGATCCCCTGCCCGTTTCCTGTCTCCCCCACGTTTCG
GTTGGTTCCTCCTGTTAGCGATGAGTTCATGGTCCCGTACGCTTCTGTGG
CAATCGGGCGCACGCTGTGGGTTGTGTTCCTGGTTGTGACCCTCATCGTG
TCGGGGTCTTATATGTTCGACGCACAGTGCACCGATGCGGGCTACGCTGC
TTTCTTCTATGAAGTGGTTTCTATCACCGTCGGTGTGATCTCGATCATCG
TGGAGTTCAGAATCGCTGTGGTCTCGACCTACGGGACTATCATAGGCATG
TAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2076:15214..19716-

>mRNA_H-paniculata_contig2076.5394.1 ID=mRNA_H-paniculata_contig2076.5394.1|Name=mRNA_H-paniculata_contig2076.5394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig2076:15214..19716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACCCTCGTGTTTCGGGAGCGGAGGTTGCTCCTGGGAGGATGCCG
ACCCTCGTGTTTCGGGAGCGGAGGTTGCTCCTGGGAGGCGATGAGTTCAT
GGTCCCGTACGCTTCTGTGGCAATCGGGCGCACGCTGTGGGTTGTGTTCC
TGGTTGTGACCCTCATCGTGTCGGGGTCTTATATGTTCGACGCACAGTGC
ACCGATGCGGGCTACGCTGCTTTCTTCTATGAAGTGGTTTCTATCACCGT
CGGTGTGATCTCGATCATCGTGGAGTTCAGAATCGCTGTGGTCTCGACCT
ACGGGACTATCATAGGCATGTAACGATGAGTTCATGGTCCCGTACGCTTC
TGTGGCAATCGGGCGCACGCTGTGGGTTGTGTTCCTGGTTGTGACCCTCA
TCGTGTCGGGGTCTTATATGTTCGACGCACAGTGCACCGATGCGGGCTAC
GCTGCTTTCTTCTATGAAGTGGTTTCTATCACCGTCGGTGTGATCTCGAT
CATCGTGGAGTTCAGAATCGCTGTGGTCTCGACCTACGGGACTATCATAG
GCATGTAA
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