mRNA_H-paniculata_contig20754.5391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20754.5391.1
Unique NamemRNA_H-paniculata_contig20754.5391.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20754.5391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20754contigH-paniculata_contig20754:1566..4505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size259
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20754.5391.1prot_H-paniculata_contig20754.5391.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20754 1566..4448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.2084467-CDS-H-paniculata_contig20754:1565..17251622929542.2084467-CDS-H-paniculata_contig20754:1565..1725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20754 1566..1725 +
1691480905.8946211-CDS-H-paniculata_contig20754:1565..17251691480905.8946211-CDS-H-paniculata_contig20754:1565..1725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20754 1566..1725 +
1622929542.224856-CDS-H-paniculata_contig20754:4407..44481622929542.224856-CDS-H-paniculata_contig20754:4407..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20754 4408..4448 +
1691480905.9046552-CDS-H-paniculata_contig20754:4407..44481691480905.9046552-CDS-H-paniculata_contig20754:4407..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20754 4408..4448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.2404451-UTR-H-paniculata_contig20754:4448..45051622929542.2404451-UTR-H-paniculata_contig20754:4448..4505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20754 4449..4505 +
1691480905.9132295-UTR-H-paniculata_contig20754:4448..45051691480905.9132295-UTR-H-paniculata_contig20754:4448..4505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20754 4449..4505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20754.5391.1

>prot_H-paniculata_contig20754.5391.1 ID=prot_H-paniculata_contig20754.5391.1|Name=mRNA_H-paniculata_contig20754.5391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
VAASRVAALARVALLTGLYQWTWTPTFTKSRTAHQKGGLFLILASFLGVV
QRTGFRHASERQPQAT*
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mRNA from alignment at H-paniculata_contig20754:1566..4505+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20754.5391.1 ID=mRNA_H-paniculata_contig20754.5391.1|Name=mRNA_H-paniculata_contig20754.5391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2940bp|location=Sequence derived from alignment at H-paniculata_contig20754:1566..4505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTGCGTCCAGGGTAGCAGCATTGGCACGGGTCGCTTTATTAACAGG
GCTGTACCAGTGGACATGGACCCCAACATTCACTAAGTCCAGGACTGCCC
ATCAGAAAGGGGGCCTCTTCTTGATATTGGCCTCGTTCCTCGGTGTTGTA
CAGCGGACAGGCAAGTGCTTGTAGGAGTCCTTCAAGATCTCTGATTGTTG
ACTTCTGGTGAAGATGTTCTTGCCACGCACATCTACAGCAAACTTTCGCG
TCAGCGAACGATATATTGATGGAGAAGTGCAAACAGAGCCATTATCATGG
CAATAATGTCAAAAAGGAGTTGTACACAAGTTGCCGTGCCACAGATGATC
TAGCTCTCGCTTGTATAAAACATTTGGCGCACAGTCAATAGTGTCAATCA
TGTCTACGGCATTAACTAATAATATATTATTGCAGAATTTGAGAATTTAA
GCTGTTTGTAAGGTGAGCTACAGAAGAGATAAACTGTAGACCTACGAGCA
TGCAATGAAAATGAGGTTATACATCAAGTACGTCGTTAGCACCACGTAAC
AATGCATTCGGAACTCACAAATATTGGAGTACTGCTACAGCGTGCAGTTT
AAGTTCAATGCATATCAATGGAACTTGGCATATTCAATATCAATTGGGGA
CGTTGTCAGTGTTAAGTACAACGTCACTGGTATTATACATATTGCGGTAT
CTGTTATTCTAGCAACTGGTCTGCACAAAACAATCATCACTAATACGAGC
ATGATGTGAGGTCACCTGGAGAAGATCTGGTCAATTTTGATGTGGGTGTG
CCCAACCATCATGAAGACGTAGTCGAGAGGCTTGTTGTCGCCCTGGGCAA
TTATGCTTTTCCGAGTATTGTCCTCAATCACCTGTCGATCTGCGTTGACT
AGCTGCAAAGACAAAAGAACGAAGAAGAAGAAGAGGAGACGGGGTGATAT
TGTTAATATCGCATTACACAACAGCGTTGAGCGAGTCACCAATAACATAT
CACCAAAATCGAATGGAACATGTATAAGAAACACAAACAAGGCAAAAAAC
GCTCGTTGACTTCTCCCACAGGCCACACTTACTCTTAGGTGCTCGGCATA
ATCTTCCTCAATCTTGGCTAACACCGTGGAGTCCTGGGTGGCACTAACGC
CTGGTGCTCCATGGCGCAGCTGGGTCCACTGCGTACATATGTCGCAAAGC
ATGAAGTCGAGGCCAACCCCGATGAGGACGTGGCCCATCTTATCCCTCCA
TACGTTGTTGAAATAGGATGGAGAAGCCAGACAATCCGCGGCAGTAGTAC
GATAGACGCGGCTCTGCTCTTCTTTAAACGCTCGTATAGTTCCTGCCAAA
TATCAATGCCAGATGAGGGGAAGACAGAGCGTAGAGGGAGAAGGAGGCAA
AGAAGTTAAGCATCATGAAATCAACGACATACTGTAGAGTGATATATTTG
TTCGCCGGTTGCATTTCATCTTGTTGTACTACTGTTACATCTGTTCTGCA
CTAAAAAAGCCAATGCTACCACAGCACGTGACTACTATAACAACAACTAC
TGTTGCTGATGCTACTATAAAAAAGGCTACCAACACTGCTACCTACCTAT
GATTCCTGTGTGCAACAACAGGGAAACAACATAACCGCCACAGCCAACAC
CACAAACATATTGCGGTCAATCACGGTTACACATATCAAGCACAACACAA
CTACCAACTAACGAAGTAACCATGGCAATGGCAGCGTCATCGCAACCAAT
AAAAAAAGCTTGAAAAATATTCAGAATATCTCTGTTTACTTCGTCCTGAA
GACGTGGAGATGGTGCACTTTCAGTCATGGTCGATGCTGGTGTATGGCTG
CTGTTAGTGAAGCATGACGTTGCTGCCCCGTGAATGACCATGATTATTAC
GCCAGGCAAGACCAGCTCTGCCGAGCGTGAATTTATACGCCTGACAGGAA
AGTGTCTTTCTATTGTGGTCGTCAGTGCAGAGGTGGTTAACGGGATGGGA
GGGTGGAAACTTGAAACGAATTTATTTTAATCTATTGGACAGTTCAGAAA
CCCGTTTCAATTTAAATGGAATAGATATGAAGAGTTGGTACGAATGTTTG
ATTCTTTACTCCAATGAATTAAACGAACGAGCATTTCGGAGATTTTTATT
CCAAAAGAATAAACATGGCGGTTGGATTCTCACATACAATTTAAATTAAT
TGTTAGCCACCAATATTTGAACGAATCTATTGTTGCCTGCAGTGGTGATC
GTTGGAAACAATTGAGCTAGTTGTCTCCCCCACTTTCATTCTCCCACACA
GCTGCCCCATCTCTCGGCGTTTTGTTGTGCCGCATCGCACGACCTACTTT
CGTCAAGCATCTAACAGGTAAGCACCTCGCTATTGTAGGCTAGCAGTGTC
ACCAGCAGTCAGTAGCGCCGTCCGTATGGAAGACATCAGACGTCGGTTGG
TTGAGGCTGGAGTTCTGCGCTCGTGAGGGTGTGAGTGTGGTGTACTCTTT
TTGTGTTCTTTTTGCTGCGCGTCAGACGGACAACAGTAGTAGTATCAGTA
CGAGTAGACCGTGCTCAGGTGGCTGACAGCAATGGTAGTGTTGGTACGGA
AGTGACGTTACAGCAATGACAGACGATCCGCAATAACCACCTTTCTCTAC
TGATGACTCAGTCGCTTGTTCGATGGAGCTACTGTTGAAGCGCATTGGGA
TAGTTGAGATAAATTGGCTGTGAGCTTGAACGTTGGATTGTTGGACCTCT
AGCACGTCAGTCAGCTACATCCTAACGGCTGTGCCTTTGTCCTCCTTCTC
TTTCTTCTTCCCCTTCACCTGTCCGTGCGCCCATGCATACAGGTTTTCGT
CATGCCTCTGAACGGCAGCCGCAAGCTACCTGAAGTTCTCAAGAACCATT
ACGTCGGCGAGTACGACATCCACCTCAAGTACATCTCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20754:1566..4505+

>mRNA_H-paniculata_contig20754.5391.1 ID=mRNA_H-paniculata_contig20754.5391.1|Name=mRNA_H-paniculata_contig20754.5391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig20754:1566..4505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTGCGTCCAGGGTAGCAGCATTGGCACGGGTCGCTTTATTAACAGG
GCTGTACCAGTGGACATGGACCCCAACATTCACTAAGTCCAGGACTGCCC
ATCAGAAAGGGGGCCTCTTCTTGATATTGGCCTCGTTCCTCGGTGTTGTA
CAGCGGACAGGTGGCTGCGTCCAGGGTAGCAGCATTGGCACGGGTCGCTT
TATTAACAGGGCTGTACCAGTGGACATGGACCCCAACATTCACTAAGTCC
AGGACTGCCCATCAGAAAGGGGGCCTCTTCTTGATATTGGCCTCGTTCCT
CGGTGTTGTACAGCGGACAGGTTTTCGTCATGCCTCTGAACGGCAGCCGC
AAGCTACCTGAGTTTTCGTCATGCCTCTGAACGGCAGCCGCAAGCTACCT
GA
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