mRNA_H-paniculata_contig20710.5378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20710.5378.1
Unique NamemRNA_H-paniculata_contig20710.5378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A293MGA5_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MGA5_ORNER)

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-9
Identity = 65/204 (31.86%), Postives = 94/204 (46.08%), Query Frame = 1
Query:   25 IHKAAKKGDASKVL--MLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNL-------------KCGPLKQAPLRAVA----------SLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSP-DGLRQLVKLTPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDI 558
            +H AAK G  S     +L+  N  IN   ++S+GKTAL IAC+HG S V   L+ + AD N+             + G L +  LR +A          S   T LH A    H  ++ +L+E     ++    G  V H A+ A +  D L  ++  T DL+ R  DG TAL   A      + RN P    +LL  GAR+++
Sbjct:  244 LHAAAKCGQLSPTTYNVLIYHNRDINC--VDSEGKTALAIACEHGRSHVVQCLIESNADANISGRKGRLPLHQAARFGKLSEDCLRVIARHTIDVNAVDSNGDTALHLAIEARHNRVVNILLEEDARANIPDRSGKLVLHKAVCATADEDTLGHIISHTGDLNYRDIDGRTALHEAA------WARN-PTAIIVLLKAGARANV 438          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A293M8Q5_ORNER (AAA domain-containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M8Q5_ORNER)

HSP 1 Score: 68.9 bits (167), Expect = 4.930e-9
Identity = 65/204 (31.86%), Postives = 94/204 (46.08%), Query Frame = 1
Query:   25 IHKAAKKGDASKVL--MLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNL-------------KCGPLKQAPLRAVA----------SLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSP-DGLRQLVKLTPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDI 558
            +H AAK G  S     +L+  N  IN   ++S+GKTAL IAC+HG S V   L+ + AD N+             + G L +  LR +A          S   T LH A    H  ++ +L+E     ++    G  V H A+ A +  D L  ++  T DL+ R  DG TAL   A      + RN P    +LL  GAR+++
Sbjct:  920 LHAAAKCGQLSPTTYNVLIYHNRDINC--VDSEGKTALAIACEHGRSHVVQCLIESNADANISGRKGRLPLHQAARFGKLSEDCLRVIARHTIDVNAVDSNGDTALHLAIEARHNRVVNILLEEDARANIPDRSGKLVLHKAVCATADEDTLGHIISHTGDLNYRDIDGRTALHEAA------WARN-PTAIIVLLKAGARANV 1114          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A3A6P3I3_9BURK (Uncharacterized protein n=1 Tax=Oxalobacter sp. TaxID=2093374 RepID=A0A3A6P3I3_9BURK)

HSP 1 Score: 68.2 bits (165), Expect = 6.930e-9
Identity = 60/217 (27.65%), Postives = 102/217 (47.00%), Query Frame = 1
Query:   10 GKHSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNL--KCGPLKQAPLRAVASLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQ---------LVKLTPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVAAWWGVHGVVKV 627
            G +SA+H AA+ G      +LL     IN  +L + G T L+ A       +A  L++  A++ +  K G               TPL  A       M++VLV+AG  ++  +   + V  L   A +PD  +          L+    D++ +  +G TALM  A    +       E+A +L+D GA+ D+++D+G+TA+++AA  G   +VK+
Sbjct:  287 GGYSAMHLAARYGLVDAGKLLLDHGATINIKSLATGG-TPLHTAASAHQIDMARFLIQRKANIEIFDKSGS--------------TPLMVAVYQADEEMVQVLVDAGAAINTKSPVNVLVTPLVYAASNPDPFKHKKNLAIIETLLSKNGDVNFQSANGRTALMAAAQQSDKS---QGYERAVLLIDKGAKLDVVNDRGETALMLAAGAGNEKLVKL 485          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: UPI001370A2BD (ankyrin repeat domain-containing protein n=1 Tax=Flavobacterium sp. Sd200 TaxID=2692211 RepID=UPI001370A2BD)

HSP 1 Score: 65.5 bits (158), Expect = 4.490e-8
Identity = 51/193 (26.42%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   16 HSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKLTPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVA 594
            ++A+  A+   D   + +LL K   INA  +N+ G++AL  A  +G + V  +L++ GADVN+K           V + +     A A +     +++L E G + +    +G  ++H+AI+    D +++L  L  D++ +  +G TAL   A       +       + LL  GA+ DI ++  +TA ++A
Sbjct:  294 NTALINASGGRDTEALEILLPKVKNINA--VNAKGESALTAAVKNGSADVVALLIKNGADVNVKDKDGYNLAYHLVQNYRAPRPGAQAGDDFGAKIKLLQEKGLNFATAQKDGSTLYHVAIVKSDLDLVKKLAALNIDVNAKNKEGITALHKAA------MVSKDDATLKYLLSIGAKKDIKTEFDETAYMLA 478          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A2T4C4I6_TRILO (Ankyrin n=1 Tax=Trichoderma longibrachiatum ATCC 18648 TaxID=983965 RepID=A0A2T4C4I6_TRILO)

HSP 1 Score: 65.5 bits (158), Expect = 7.030e-8
Identity = 56/159 (35.22%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   16 HSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWG---------MLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKLTPDLDVRGHDGATAL 465
            H A+  A   G ASK + LL + PG++ +AL  DG+T LY AC+        +LLRAGAD N+KC     A  R     K    +A  CN   G         +  +LV+AG D+   T  G    H A+  +SP  L+ L+    D +   H+GAT L
Sbjct:  699 HRALAWAVNVG-ASKNVALLLQQPGVDVNAL-VDGQTPLYRACEMVDDVQVAMLLRAGADSNIKCDVGDNAGYRWPEPAKMNCFYAL-CNQQGGKQYDERFQAVFPLLVQAGVDIHYRTPFGETALHAAV--NSPVLLKLLLDAGLDANAADHEGATPL 852          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: UPI001EE53770 (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53770)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-7
Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = 1
Query:   91 INADALNSDGKTALYIACDHGYSSVAGVLLRAGAD-----------VNLKCGPLKQAPLRAVASL-----------KRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKL-TPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVAAWWGVHGVVK 624
            ++ +  ++DG T L +A ++    V  VLL +GAD           ++L C    +  ++ V  L           + TPL  AA      +  +L E+G D S+   +G  V H A +    + ++ ++KL   D++ RG +G T L++ AGY T   I+       +LL+ GA   +++  GD  + VA   G   +VK
Sbjct:  363 LDINCRDTDGSTPLLLAIEYNARGVFDVLLESGADPSVVNRDGDNVLHLACLRGDEEMVKHVLKLHIVDINSRGSNRMTPLLLAAEYNTCNVFELLRESGADPSVVNRDGKNVLHFACIRGDEEMVKHVLKLHIVDINSRGSNGLTPLLLAAGYSTSDVIK-------LLLENGADPLVVNSDGDNVLHVACAEGDEDIVK 556          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: E6VS75_PSEA9 (Ankyrin n=1 Tax=Pseudodesulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) TaxID=643562 RepID=E6VS75_PSEA9)

HSP 1 Score: 63.2 bits (152), Expect = 2.940e-7
Identity = 59/215 (27.44%), Postives = 100/215 (46.51%), Query Frame = 1
Query:   10 GKHSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDG---------LRQLVKLTPDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVAAWWGVHGVVKV 627
            G  +A+H A++ G      +LL     I+ + L + G T L+ A        AG    A A   +KC    +A L        T L  A    H  M++ LV+AG ++++ +   + V  L   A +PD          ++ L+    ++D +  +G TALM  A    +       E+A +L+  GA  D+++DKG+TA+++AA  G   +VK+
Sbjct:  288 GGMAALHLASQFGFVDAAKLLLDNGAAIDLEGLATGG-TPLHYA--------AGANQVAAAKYLIKC----KAKLDIFDKSGSTALMLAVHQAHADMVKTLVDAGAEINVKSPVNVLVTPLVAAATNPDPFKNKDSLAIIKHLLSGPGNVDFQAANGWTALMAAA---QQSNTGQGYERAALLISKGANLDMVNDKGETALMLAAGAGNQKLVKL 486          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A1C0UX06_9NOSO (Uncharacterized protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A1C0UX06_9NOSO)

HSP 1 Score: 62.0 bits (149), Expect = 3.310e-7
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   88 GINADALNSDGKTALYIACDHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGH--WGMLRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKLTPDLDVRGHDGATALMVCAGY 483
            GI  DA++S+G+ AL+ A  +   S   +LL++GA+ NLK               + TPL  A  +    + + +VL+EAG +L+ ++S G +V  LA+L  + D +R+L++L  D++ +   G TAL     Y
Sbjct:  158 GIEIDAISSNGEAALHKAIRNNQLSAVELLLKSGANPNLK----------VEEGWEYTPLMVAISSASIDYAIFQVLIEAGANLNGSSSRGESVLMLAVLTLNIDAVRRLLELGVDVNAKDMYGHTALYYAIAY 281          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A1G9LFR2_9DELT (Ankyrin repeat n=1 Tax=Maridesulfovibrio ferrireducens TaxID=246191 RepID=A0A1G9LFR2_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 6.940e-7
Identity = 58/233 (24.89%), Postives = 95/233 (40.77%), Query Frame = 1
Query:   61 VLMLLRKNPGINADAL--NSDGKTALYIACDHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWGMLRVLVE---------------------------------AGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKLT---------PDLDVRGHDGATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVAAWWGVHGVVKV 627
            +   L  NP ++   +  N+ G  AL++    G+   A +LL+ GA +NLK                RTPLH AA   H  M + L+E                                 AG D++  ++  + V  L   A +PD  +    L           ++D +  +G TALM  A    +       E+A +L+   A+ DI++DK +TA+++AA  G   +VK+
Sbjct:  268 IQNFLTLNPKLDLQKIVNNNGGCAALHLTARFGFVDCANLLLKNGASINLKS-----------LDTGRTPLHVAASANHIDMAKCLIEHNAKLELVDKTXXXXXXXXXXXXXXXXXXXXVNAGADINTKSTANILVTPLIKAASNPDPFKHKANLAIIKALLSGKGNVDFQAGNGNTALMSAA---QQSNTSQGYERAALLISKDAKLDIVNDKDETALMLAAGAGNEKLVKL 486          
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Match: A0A8H5L2I8_GIBSU (Uncharacterized protein n=1 Tax=Gibberella subglutinans TaxID=42677 RepID=A0A8H5L2I8_GIBSU)

HSP 1 Score: 61.2 bits (147), Expect = 7.610e-7
Identity = 44/123 (35.77%), Postives = 58/123 (47.15%), Query Frame = 1
Query:   16 HSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIAC---DHGYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWGMLRVLVEAGGDLSMTTSEGLAVHHLA 375
            HS +H AA  G    +  LL  N G N D  +S G TAL+ AC   + G + V  VLL+ GAD NLK    + AP+  +            CNG W     L++ G D++     G A  HLA
Sbjct:   65 HSHLHLAAFYGWVDIIQDLL--NLGSNPDVQDSKGLTALHAACASGEEGTAEVVEVLLKNGADPNLKADATEFAPIHHLIEASCNAAEPWDCNGKW---EALLKGGADINSRDKHGRAPIHLA 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20710.5378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MGA5_ORNER3.200e-931.86Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A293M8Q5_ORNER4.930e-931.86AAA domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A3A6P3I3_9BURK6.930e-927.65Uncharacterized protein n=1 Tax=Oxalobacter sp. Ta... [more]
UPI001370A2BD4.490e-826.42ankyrin repeat domain-containing protein n=1 Tax=F... [more]
A0A2T4C4I6_TRILO7.030e-835.22Ankyrin n=1 Tax=Trichoderma longibrachiatum ATCC 1... [more]
UPI001EE537701.610e-726.87putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]
E6VS75_PSEA92.940e-727.44Ankyrin n=1 Tax=Pseudodesulfovibrio aespoeensis (s... [more]
A0A1C0UX06_9NOSO3.310e-732.09Uncharacterized protein n=4 Tax=Nostocales TaxID=1... [more]
A0A1G9LFR2_9DELT6.940e-724.89Ankyrin repeat n=1 Tax=Maridesulfovibrio ferriredu... [more]
A0A8H5L2I8_GIBSU7.610e-735.77Uncharacterized protein n=1 Tax=Gibberella subglut... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20710contigH-paniculata_contig20710:2818..4146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score68.2
Seed ortholog evalue8.7e-09
Seed eggNOG ortholog9258.ENSOANP00000013501
Preferred nameTEX14
KEGG koko:K17540
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007140,GO:0007276,GO:0007346,GO:0008150,GO:0008608,GO:0009987,GO:0010033,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030071,GO:0030496,GO:0031577,GO:0032091,GO:0032465,GO:0032466,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034097,GO:0042221,GO:0043062,GO:0043063,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043393,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044703,GO:0045171,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051276,GO:0051302,GO:0051304,GO:0051306,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0065009,GO:0070887,GO:0071173,GO:0071174,GO:0071310,GO:0071345,GO:0071840,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1905818,GO:1905819,GO:1990823,GO:1990830,GO:2000816,GO:2001251
EggNOG free text desc.intercellular bridge organization
EggNOG OGs28KIB@1,2QSZN@2759,390E1@33154,3BJI3@33208,3CYSW@33213,3J898@40674,488DH@7711,48ZIH@7742
COG Functional cat.T
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons2
Model size1032
Cds size1032
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929540.6931572-CDS-H-paniculata_contig20710:2817..30331622929540.6931572-CDS-H-paniculata_contig20710:2817..3033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20710 2818..3033 -
1691480905.2217968-CDS-H-paniculata_contig20710:2817..30331691480905.2217968-CDS-H-paniculata_contig20710:2817..3033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20710 2818..3033 -
1622929540.7161653-CDS-H-paniculata_contig20710:3330..41461622929540.7161653-CDS-H-paniculata_contig20710:3330..4146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20710 3331..4146 -
1691480905.233978-CDS-H-paniculata_contig20710:3330..41461691480905.233978-CDS-H-paniculata_contig20710:3330..4146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20710 3331..4146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20710.5378.1prot_H-paniculata_contig20710.5378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20710 2818..4146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20710.5378.1

>prot_H-paniculata_contig20710.5378.1 ID=prot_H-paniculata_contig20710.5378.1|Name=mRNA_H-paniculata_contig20710.5378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
MSTGKHSAIHKAAKKGDASKVLMLLRKNPGINADALNSDGKTALYIACDH
GYSSVAGVLLRAGADVNLKCGPLKQAPLRAVASLKRTPLHAAACNGHWGM
LRVLVEAGGDLSMTTSEGLAVHHLAILADSPDGLRQLVKLTPDLDVRGHD
GATALMVCAGYFTRMFIRNAPEKAQILLDGGARSDIISDKGDTAIVVAAW
WGVHGVVKVLLDAGASCSDRTKKGWTALMIAAREGHLEVVRLLRDAGAAL
SDHQPEGLTAMMMAAAKGQLEVIVQLLHDAGVDICDRDVGGHSALLRAAA
EGHSEIVRYLLDAGSDLSDRNEGGASPLHAAAFVGHTEIVRELI
back to top

mRNA from alignment at H-paniculata_contig20710:2818..4146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20710.5378.1 ID=mRNA_H-paniculata_contig20710.5378.1|Name=mRNA_H-paniculata_contig20710.5378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1329bp|location=Sequence derived from alignment at H-paniculata_contig20710:2818..4146- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACAGGGAAGCATTCGGCGATCCATAAAGCGGCCAAAAAGGGTGA TGCATCCAAAGTCCTCATGCTTTTACGCAAAAACCCCGGCATAAACGCTG ACGCGCTCAATTCCGATGGAAAAACTGCTCTCTATATCGCCTGTGATCAC GGATACTCTAGCGTTGCAGGGGTGCTGCTCAGAGCAGGGGCTGATGTTAA TCTCAAATGTGGGCCGCTCAAGCAGGCACCTCTTCGTGCAGTTGCTTCGC TCAAGCGGACACCTCTTCACGCAGCTGCTTGTAATGGACATTGGGGTATG TTACGAGTACTGGTTGAGGCAGGTGGGGATCTTTCTATGACTACGAGCGA GGGCTTGGCCGTTCACCACTTGGCGATACTTGCTGACTCTCCAGATGGGC TTCGGCAGTTGGTGAAGCTGACACCGGACCTGGATGTACGTGGTCATGAC GGGGCGACTGCTCTTATGGTATGTGCAGGGTATTTTACTCGCATGTTCAT CCGTAATGCTCCGGAGAAAGCTCAAATCCTGCTGGACGGGGGCGCTCGTT CTGACATCATCAGTGACAAGGGCGACACTGCCATAGTTGTCGCTGCCTGG TGGGGAGTTCACGGCGTCGTTAAAGTGCTCTTGGACGCAGGAGCCAGCTG CTCTGACCGCACTAAGAAGGGTTGGACGGCCTTGATGATCGCTGCTCGGG AGGGGCACTTGGAGGTTGTGAGGCTTCTGCGCGATGCTGGGGCGGCCTTG TCTGATCATCAACCTGAGGGTTTGACGGCGATGATGATGGCCGCTGCGAA AGGGCAGTTAGAGGTGGTGCGGTTCCTCTGCGAAGCTGGGGCGGACATAT CTGCCTGCGATTGTAACGGTTGGACAGCGATGATCAATGCTGCCGCATAT GGGAACGTGGAGATTGTGCGATTCCTTTGCGATGCTGGGGCGGACTCGGC CCACCGCAGTACTGGCGGCGTCACGGCTTTGATGATTGCCGCTGCAAAAG GGCACTTGGAGGTTGTCCGGTTGCTGCGCGACGCTAAGCGAGCTGACATC TCTGACCGCAGTGATGTCGGTTGGACGGCCTTGATGTTTGCTGCTAGGGC TGGGCATTTGAAGATTGTACAGCTCTTGCACGATGCTGGAGTGGACATAT GTGACCGTGATGTTGGCGGCCACAGCGCCTTGCTGCGTGCTGCTGCAGAA GGGCACTCGGAAATTGTCCGGTACCTCCTCGATGCTGGGTCGGACTTGTC CGACCGGAATGAAGGTGGAGCCTCGCCTCTCCATGCAGCTGCCTTCGTAG GGCATACCGAGATAGTGCGAGAATTGATA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20710:2818..4146-

>mRNA_H-paniculata_contig20710.5378.1 ID=mRNA_H-paniculata_contig20710.5378.1|Name=mRNA_H-paniculata_contig20710.5378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig20710:2818..4146- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACAGGGAAGCATTCGGCGATCCATAAAGCGGCCAAAAAGGGTGA
TGCATCCAAAGTCCTCATGCTTTTACGCAAAAACCCCGGCATAAACGCTG
ACGCGCTCAATTCCGATGGAAAAACTGCTCTCTATATCGCCTGTGATCAC
GGATACTCTAGCGTTGCAGGGGTGCTGCTCAGAGCAGGGGCTGATGTTAA
TCTCAAATGTGGGCCGCTCAAGCAGGCACCTCTTCGTGCAGTTGCTTCGC
TCAAGCGGACACCTCTTCACGCAGCTGCTTGTAATGGACATTGGGGTATG
TTACGAGTACTGGTTGAGGCAGGTGGGGATCTTTCTATGACTACGAGCGA
GGGCTTGGCCGTTCACCACTTGGCGATACTTGCTGACTCTCCAGATGGGC
TTCGGCAGTTGGTGAAGCTGACACCGGACCTGGATGTACGTGGTCATGAC
GGGGCGACTGCTCTTATGGTATGTGCAGGGTATTTTACTCGCATGTTCAT
CCGTAATGCTCCGGAGAAAGCTCAAATCCTGCTGGACGGGGGCGCTCGTT
CTGACATCATCAGTGACAAGGGCGACACTGCCATAGTTGTCGCTGCCTGG
TGGGGAGTTCACGGCGTCGTTAAAGTGCTCTTGGACGCAGGAGCCAGCTG
CTCTGACCGCACTAAGAAGGGTTGGACGGCCTTGATGATCGCTGCTCGGG
AGGGGCACTTGGAGGTTGTGAGGCTTCTGCGCGATGCTGGGGCGGCCTTG
TCTGATCATCAACCTGAGGGTTTGACGGCGATGATGATGGCCGCTGCGAA
AGGGCAGTTAGAGGTGATGTCGACAGGGAAGCATTCGGCGATCCATAAAG
CGGCCAAAAAGGGTGATGCATCCAAAGTCCTCATGCTTTTACGCAAAAAC
CCCGGCATAAACGCTGACGCGCTCAATTCCGATGGAAAAACTGCTCTCTA
TATCGCCTGTGATCACGGATACTCTAGCGTTGCAGGGGTGCTGCTCAGAG
CAGGGGCTGATGTTAATCTCAAATGTGGGCCGCTCAAGCAGGCACCTCTT
CGTGCAGTTGCTTCGCTCAAGCGGACACCTCTTCACGCAGCTGCTTGTAA
TGGACATTGGGGTATGTTACGAGTACTGGTTGAGGCAGGTGGGGATCTTT
CTATGACTACGAGCGAGGGCTTGGCCGTTCACCACTTGGCGATACTTGCT
GACTCTCCAGATGGGCTTCGGCAGTTGGTGAAGCTGACACCGGACCTGGA
TGTACGTGGTCATGACGGGGCGACTGCTCTTATGGTATGTGCAGGGTATT
TTACTCGCATGTTCATCCGTAATGCTCCGGAGAAAGCTCAAATCCTGCTG
GACGGGGGCGCTCGTTCTGACATCATCAGTGACAAGGGCGACACTGCCAT
AGTTGTCGCTGCCTGGTGGGGAGTTCACGGCGTCGTTAAAGTGCTCTTGG
ACGCAGGAGCCAGCTGCTCTGACCGCACTAAGAAGGGTTGGACGGCCTTG
ATGATCGCTGCTCGGGAGGGGCACTTGGAGGTTGTGAGGCTTCTGCGCGA
TGCTGGGGCGGCCTTGTCTGATCATCAACCTGAGGGTTTGACGGCGATGA
TGATGGCCGCTGCGAAAGGGCAGTTAGAGGTGATTGTACAGCTCTTGCAC
GATGCTGGAGTGGACATATGTGACCGTGATGTTGGCGGCCACAGCGCCTT
GCTGCGTGCTGCTGCAGAAGGGCACTCGGAAATTGTCCGGTACCTCCTCG
ATGCTGGGTCGGACTTGTCCGACCGGAATGAAGGTGGAGCCTCGCCTCTC
CATGCAGCTGCCTTCGTAGGGCATACCGAGATAGTGCGAGAATTGATAAT
TGTACAGCTCTTGCACGATGCTGGAGTGGACATATGTGACCGTGATGTTG
GCGGCCACAGCGCCTTGCTGCGTGCTGCTGCAGAAGGGCACTCGGAAATT
GTCCGGTACCTCCTCGATGCTGGGTCGGACTTGTCCGACCGGAATGAAGG
TGGAGCCTCGCCTCTCCATGCAGCTGCCTTCGTAGGGCATACCGAGATAG
TGCGAGAATTGATA
back to top