mRNA_H-paniculata_contig20686.5373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20686.5373.1
Unique NamemRNA_H-paniculata_contig20686.5373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20686.5373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20686contigH-paniculata_contig20686:967..2400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929540.2448-CDS-H-paniculata_contig20686:968..11391622929540.2448-CDS-H-paniculata_contig20686:968..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20686 969..1139 -
1691480904.9993818-CDS-H-paniculata_contig20686:968..11391691480904.9993818-CDS-H-paniculata_contig20686:968..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20686 969..1139 -
1622929540.2561975-CDS-H-paniculata_contig20686:2268..24001622929540.2561975-CDS-H-paniculata_contig20686:2268..2400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20686 2269..2400 -
1691480905.0126767-CDS-H-paniculata_contig20686:2268..24001691480905.0126767-CDS-H-paniculata_contig20686:2268..2400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20686 2269..2400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20686.5373.1prot_H-paniculata_contig20686.5373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20686 969..2400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20686.5373.1

>prot_H-paniculata_contig20686.5373.1 ID=prot_H-paniculata_contig20686.5373.1|Name=mRNA_H-paniculata_contig20686.5373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
KSIWQVSASEYHSMSRRESLIAAGDGVYSQGGIEGADNPQGRQNMHQRPI
VAGSLSAKLAPARVELGMLMILACVALGLSIAAVVDDHWILGGGYRAGHQ
N
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mRNA from alignment at H-paniculata_contig20686:967..2400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20686.5373.1 ID=mRNA_H-paniculata_contig20686.5373.1|Name=mRNA_H-paniculata_contig20686.5373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig20686:967..2400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGATATGGCAGGTTTCGGCGAGCGAGTATCACAGCATGTCACGTCG
TGAGAGCCTGATTGCCGCGGGTGACGGTGTGTACTCGCAGGGTGGCATTG
AGGGCGCAGACAACCCGCAAGGCAGGCAGAACGTGCGGAAAACATGATAC
TGCTGTAGCTGCAACCATTGACTAACCCTAACCGTAACCGTCACCGTAAC
CTGCTGGGAAGTTCATTATATGTACGTGGGCGTATTTGGCATGGGGTCTA
CGGTCTCACCCTGCGCCTTCTCTCGTTAAATGGGACTTGTTATTTTCCGC
GAGTTGTCTTCCCATTCGTACACTCCTTTCTGTAAGGGTAAATCTGTGAA
AATAATCAAATTTCCCTGTAGGGTTGCATTCCACATCCTTGGCCTTACCG
TGTTTTAGTAAATTTGCGAAGGATGCTTTCGGGCATGGTCATTGTACGTT
GTATTGTCTCGGCTTCGCGATTCTGATAGTATCATTTTGGTGATTGCTTC
GTTCAGGTTTTTCACACGTAAGGTTGGGCGCATTCTACAAATGTGGTCTG
CTGTGTCCTATTGAGCAATTAGCTTCATATCTTGTTGCCATGTCCCTAGC
TTGTTGGTTATTCGGCCCATGGCACTGTTTGTAGATATCCCCTCTTGCGT
TTTATATGAAAATGATCACACATACGATAGGAATAGGACGAGTAGATAAT
CGATTGTGTTGTACATCGATTCGTTCCACCACCGAACGCCGCCTTTGGTT
GAAACTTCTAGCTGCCGGCTGGCAAGATGAGTAATGACGACACCAGCGCC
TATTGCTGTAGTCGGCACTGATGATTGGCGACCTCTACCAATAAGTTCAT
GTAACCCGCAATACATAGTCGCAGCCGTCTGACTTTTGCTTGGTTGTTGC
CCAACGTACTCTGCGCCAGTCCAATCGCTTGCGACTACGATTATTTATAT
GGACGACTTGAATACGTCGGCATTGTCTTCCATCCGTTGGGGTTCATACA
GCCCATACAACTGCCTTGCCGTCCCGAGACTTTTTCTGCGTTGTGGGTCA
TATCTTGTTTGCTTCCGACACAAAATGTTGTTCACATCTTGGTACGAAAT
ATTCGGGCAACAATGACGTATCCCACCGTTCCCAGATGTCTATCATAGTC
TCCTTAGTGTTTTGGTCACCGCCGTCCCTGTCAGGCATCGGTGGTGCAAC
TGAAAACCACCGCTCGATTCCACTATGCAAACTTTATTGATCTTCTCCGT
TTTTTTATTAGATGCACCAGCGTCCCATCGTAGCCGGATCTCTGTCGGCG
AAATTAGCACCAGCACGTGTGGAACTGGGGATGTTGATGATCTTGGCCTG
CGTAGCTCTTGGGCTCTCTATTGCAGCTGTTGTGGACGATCACTGGATAT
TAGGCGGGGGCTACAGGGCTGGTCACCAAAATGT
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Coding sequence (CDS) from alignment at H-paniculata_contig20686:967..2400-

>mRNA_H-paniculata_contig20686.5373.1 ID=mRNA_H-paniculata_contig20686.5373.1|Name=mRNA_H-paniculata_contig20686.5373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig20686:967..2400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGATATGGCAGGTTTCGGCGAGCGAGTATCACAGCATGTCACGTCG
TGAGAGCCTGATTGCCGCGGGTGACGGTGTGTACTCGCAGGGTGGCATTG
AGGGCGCAGACAACCCGCAAGGCAGGCAGAACAAATCGATATGGCAGGTT
TCGGCGAGCGAGTATCACAGCATGTCACGTCGTGAGAGCCTGATTGCCGC
GGGTGACGGTGTGTACTCGCAGGGTGGCATTGAGGGCGCAGACAACCCGC
AAGGCAGGCAGAACATGCACCAGCGTCCCATCGTAGCCGGATCTCTGTCG
GCGAAATTAGCACCAGCACGTGTGGAACTGGGGATGTTGATGATCTTGGC
CTGCGTAGCTCTTGGGCTCTCTATTGCAGCTGTTGTGGACGATCACTGGA
TATTAGGCGGGGGCTACAGGGCTGGTCACCAAAATATGCACCAGCGTCCC
ATCGTAGCCGGATCTCTGTCGGCGAAATTAGCACCAGCACGTGTGGAACT
GGGGATGTTGATGATCTTGGCCTGCGTAGCTCTTGGGCTCTCTATTGCAG
CTGTTGTGGACGATCACTGGATATTAGGCGGGGGCTACAGGGCTGGTCAC
CAAAAT
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