mRNA_H-paniculata_contig2067.5367.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2067.5367.1 vs. uniprot
Match: A0A6H5JJC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC9_9PHAE) HSP 1 Score: 834 bits (2154), Expect = 2.190e-263 Identity = 447/800 (55.88%), Postives = 578/800 (72.25%), Query Frame = 3
Query: 3 SDNDEWPSPQELVELGRRVVLAGDEPSELVFSTESDVTEEVISAVDFRAGTCSERDDYPEPAWTRVQGDIVQYRLSRFNSTIFEVVPPEREALNENQTGNVLICGHTPTFDRIDTQLSRSTLWSWDAERPETGFGLPRAAVVSSASGGRWIDRGTDAEEGEFHGVACRDEDSSNRYYWDVVPIYNSXXXXXXXXXXXXXXXXXXXXXXXGGY-----------EYSGEFAGAEDACSSLGDGWVFSAPRTAFENMALRRAMSTNGVETVWVHYTSDGDDLGD--------SLCWSREWEQAYCVSANDVSMCNGIICSGAPTQEIIPTGEIPSVELADWENDTYIRPSYSITPTVRNLNGWVRVAGGNEFDVSDRDYVIGIILAAAPLFVFGFIVACCCLPVGHIAAGSKQHHVDGEGFFGCLCPARCKQGDFIASGTLAIVVAFTILTLIGGAMAIYGVRSVDADVVNLWENLDGMGGDMVTAQTRLDEIYERMVRVESSFPTVASCSGLPSLEAAASGVSSAEGSLGELV-DANIGSVGQSIQVVNEDIKATADVRRGIVYSAGGLVLVMSIVYVVVGHYALAKDDGNGKDGGARMRGPVVIGCLFLPLTLLVILTCWFLFGLSTSFSLFTADFCMAPTEHTTGVFEDPGDKEVVSFYTSCSGTNVFSSALSTAFIQATAAKELVASVDDDIFAASCLNETATKAALELDMDAILMEIDAMGYLIQCGKVNPYFVNGVEGSLCHDAPEKVWFVTGGFAVVSVSLLVVAIAFRLLLQQKEEGLYRVVFEEDLSLSRSSS 2342
S +D+WPSP ELV +G RV++AG E S LVFST+SD E + +A +F C + + +PEP+W RVQGD+V+YRL R NSTIFE+VP EAL + T NV+ CG TPTFDR+D L ST+WSWD +RPETGF LPRAAV+SS SGGRW D TD++ GE H ACR+ D RY W VV + XXXXXXXXXXXXXXXXXXX +YSGEF+ A++AC S+G +VF APR+A+EN L +S+ G+++ W+ +TS+G+ G SLCW+ E YCV+ +D G+ A + G++P + +WE D Y+RP Y+++ TV+ L+GWVRV+G NEFD+S+RDYVIGIILAA P+FVFGFIVACCCLPVGH+AA SKQHH+DG GFFGCLCPARCK+GDF+ SGTL +VV FTI+T+IGGA+AIYGV+SVD +VVNL +L+ +G M AQT +D IY +V VESSF V+SCS + SLE +G+ SA+ ++ EL+ D +GSV +I + E+ T RRG+VY+AG LVLVMS+VYV VG YAL KDDG GKDGGARMRGPV+IGCL LPLTLLVIL CWFLFG+STS +L T+DFC+ P+ H T F D+E+V++YTSC G N FS L TA++Q +AA+ L+ ++DDD FA C +E +K L+ ++ IL +ID++GYL+QCG VNP+FV GVE +LC DAP+ +WFV GFAVVSV L VVA++FRLLLQQKEEGLY+V+FE++++ S +SS
Sbjct: 247 SGSDDWPSPAELVAMGTRVIIAGSESSTLVFSTDSDAIEVLTAAENFDTSECVDVEGFPEPSWHRVQGDMVEYRLDRANSTIFELVPGSDEALTSSMTANVMNCGFTPTFDRLDADLMESTIWSWDTDRPETGFDLPRAAVISS-SGGRWTDVETDSDSGERHSFACRNSDL--RYDWTVVAVDTGSSGSXXXXXXXXXXXXXXXXXXXXXXXXXSTSEIEFSDYSGEFSEADEACESVG--YVFGAPRSAYENAILSFVLSSAGLDSAWIDHTSEGESGGSGSSASGGSSLCWTHEGGSEYCVATSD-----GVCADVADPVTEVADGQLPDFLVREWEEDDYVRPDYTLSSTVQTLHGWVRVSGDNEFDLSERDYVIGIILAAVPVFVFGFIVACCCLPVGHVAASSKQHHLDGGGFFGCLCPARCKRGDFMGSGTLGVVVFFTIVTIIGGAVAIYGVQSVDGEVVNLVSSLEDIGQAMGEAQTGVDSIYTLLVNVESSFEEVSSCSLVSSLEGVEAGIESAKLAVEELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGFYALGKDDGRGKDGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDPSGHATEAFSKAADQELVAYYTSCEGANTFSDQLVTAYLQGSAAQGLLDALDDDEFATECPDEVESKETLDENIVLILAQIDSLGYLVQCGSVNPFFVEGVEKALCTDAPDAIWFVICGFAVVSVGLFVVAVSFRLLLQQKEEGLYKVIFEDEIAASETSS 1036
BLAST of mRNA_H-paniculata_contig2067.5367.1 vs. uniprot
Match: D7FR15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR15_ECTSI) HSP 1 Score: 601 bits (1549), Expect = 3.720e-184 Identity = 301/540 (55.74%), Postives = 394/540 (72.96%), Query Frame = 3
Query: 750 MSTNGVETVWVHYTSDGDDLGD--------SLCWSREWEQAYCVSANDVSMCNGIICSGAPTQEIIPTGEIPSVELADWENDTYIRPSYSITPTVRNLNGWVRVAGGNEFDVSDRDYVIGIILAAAPLFVFGFIVACCCLPVGHIAAGSKQHHVDGEGFFGCLCPARCKQGDFIASGTLAIVVAFTILTLIGGAMAIYGVRSVDADVVNLWENLDGMGGDMVTAQTRLDEIYERMVRVESSFPTVASCSGLPSLEAAASGVSSAEGSLGELV-DANIGSVGQSIQVVNEDIKATADVRRGIVYSAGGLVLVMSIVYVVVGHYALAKDDGNGKDGGARMRGPVVIGCLFLPLTLLVILTCWFLFGLSTSFSLFTADFCMAPTEHTTGVFEDPGDKEVVSFYTSCSGTNVFSSALSTAFIQATAAKELVASVDDDIFAASCLNETATKAALELDMDAILMEIDAMGYLIQCGKVNPYFVNGVEGSLCHDAPEKVWFVTGGFAVVSVSLLVVAIAFRLLLQQKEEGLYRVVFEEDLSLSRSSS 2342
M + G+++ W+ +TS+G+ G SLCW+ E YCV+ +D G+ A + G++P + +WE D Y+RP Y+++ TV L+GWVRV+G NEFD+S+RDYVIGIILAA P+F+FGFIVACCCLPVGH+AA SKQHH+DG GFFGC CPARCK+GDF+ SGTL +VV FTI+T+IGGA AIYGVRSVD +VNL +L+ +G M AQT +D IY + VE SF V+SCS + SLE +G+ SA+ ++ EL+ D +GSV +I + E+ T RRG+VY+AG LVLVMS+VYV VG+YAL KDDG GK GGARMRGPV+IGCL LPLTLLVIL CWFLFG+STS +L T+DFC+ P+ H T F P D+E+V++YTSC G N FS L TA++Q +AA+ L+ ++DDD FA C +E +K L+ ++ IL +ID++GYL+QCG VNPYFV GVE +LC DAP+ +WFV GFAVVSV L VVA++FRLLLQQKEEGLY+V+FE+++ S +SS
Sbjct: 1 MQSAGLDSAWIDHTSEGESGGSGSSASGEPSLCWTHEGGSEYCVATSD-----GVCADVADPVTEVADGQLPDFLVREWEEDDYVRPDYTLSSTVEALHGWVRVSGDNEFDLSERDYVIGIILAAVPVFIFGFIVACCCLPVGHVAASSKQHHLDGGGFFGCFCPARCKRGDFMGSGTLGVVVFFTIVTIIGGAAAIYGVRSVDGQLVNLVSSLEDIGQAMGEAQTGVDSIYTLLTNVELSFEEVSSCSLVSSLEGVEAGIESAKLAVEELIEDDQLGSVSTNILELEEEFSNTQTTRRGVVYAAGALVLVMSVVYVSVGYYALGKDDGRGKAGGARMRGPVLIGCLILPLTLLVILLCWFLFGVSTSVALLTSDFCVDPSGHATEAFSKPADQELVAYYTSCEGANTFSDQLVTAYLQGSAAQGLLDALDDDEFATECPDEVESKETLDENIVLILAQIDSLGYLVQCGSVNPYFVEGVEEALCTDAPDAIWFVICGFAVVSVGLFVVAVSFRLLLQQKEEGLYKVIFEDEIEASETSS 535
BLAST of mRNA_H-paniculata_contig2067.5367.1 vs. uniprot
Match: D7FR16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR16_ECTSI) HSP 1 Score: 213 bits (541), Expect = 8.620e-57 Identity = 101/168 (60.12%), Postives = 124/168 (73.81%), Query Frame = 3
Query: 3 SDNDEWPSPQELVELGRRVVLAGDEPSELVFSTESDVTEEVISAVDFRAGTCSERDDYPEPAWTRVQGDIVQYRLSRFNSTIFEVVPPEREALNENQTGNVLICGHTPTFDRIDTQLSRSTLWSWDAERPETGFGLPRAAVVSSASGGRWIDRGTDAEEGEFHGVACR 506
S +D+WPSP ELV +G RV++AG E S LVFST+SD E +ISA DF C++ + +PEP+W RVQGD+V+YRL R NSTIFE+VP EAL + T NV+ CG TPTFDR+D L ST+WSWD +RPETGF LPRAAV+SS GGRW D TD++ GE H ACR
Sbjct: 190 SGSDDWPSPAELVAMGTRVIIAGSESSTLVFSTDSDAVEVLISAEDFDTSECADVEGFPEPSWYRVQGDMVEYRLDRANSTIFELVPGSDEALTSSMTDNVMNCGFTPTFDRLDADLMESTIWSWDTDRPETGFDLPRAAVISS-DGGRWTDVETDSDSGERHSFACR 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2067.5367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2067.5367.1 >prot_H-paniculata_contig2067.5367.1 ID=prot_H-paniculata_contig2067.5367.1|Name=mRNA_H-paniculata_contig2067.5367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1391bp MALRRAMSTNGVETVWVHYTSDGDDLGDSLCWSREWEQAYCVSANDVSMCback to top mRNA from alignment at H-paniculata_contig2067:516..22308+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2067.5367.1 ID=mRNA_H-paniculata_contig2067.5367.1|Name=mRNA_H-paniculata_contig2067.5367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21793bp|location=Sequence derived from alignment at H-paniculata_contig2067:516..22308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2067:516..22308+ >mRNA_H-paniculata_contig2067.5367.1 ID=mRNA_H-paniculata_contig2067.5367.1|Name=mRNA_H-paniculata_contig2067.5367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8346bp|location=Sequence derived from alignment at H-paniculata_contig2067:516..22308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |