mRNA_H-paniculata_contig20658.5364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20658.5364.1
Unique NamemRNA_H-paniculata_contig20658.5364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.920e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:   26 TSAGKEKGRFALYIAVMGDGRKVTSRIAFQSTPFTPPT*SHTGRPPAPRKGSVAWEISPANRSRCGHPPNGMSYEVREQ 262
            ++ GKE+ RFAL +AVM DG+KV+ RI F+ TPFTPPT S  G+   PRK SVAWEI PANR++ GHP NG+S+ V+E+
Sbjct:   27 STGGKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEK 105
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BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.540e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   26 TSAGKEKGRFALYIAVMGDGRKVTSRIAFQSTPFTPPT*SHTGRPPAPRKGSVAWEISPANRSRCGHPPNGMSYEVREQ 262
            ++ GKEK RF L +AVM DG+KV+ RI F+ TPFTPPT S  G+   PRK SVAWEI PANR++ GHP NGMS+ V+E+
Sbjct:  146 STGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEK 224
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BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.200e-19
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 3 
Query:  207 TAAGVGTPRMACRTRCAN-NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVADP 554
            TA   G+P  AC +     +WCD  E KLW++++WK  P   S+  Q+  ++VLDD+KC +D  F  +  K  NT    IP  LT + QP D ML+K+MKR +RG YTA +A    DP
Sbjct:  356 TAPSTGSPWEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDP 473
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.770e-18
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVADP 554
            +WCD  E+KLW++++WK  P   S+  Q+  ++VLDD+KC +D  F  + K+  NT    IP  LT + QP D ML+K+MKR +RG YTA +A    DP
Sbjct:  338 SWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP 436
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.970e-17
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVADP 554
            +WCD  E KLW++++WK  P   S+  Q+  ++VLDD+KC +D  F  + K+  NT    IP  LT + QP D ML+K+MKR +RG YTA +A    DP
Sbjct:  345 SWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP 443
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.370e-17
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRTSLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVADP 554
            NWCD  E  LWL E+W             S++VLDD++C R + F E  ++  NT   LIP  LT + QP D ML+KEMKR +RGRYT + A+ +ADP
Sbjct:  382 NWCDARECILWLSESW-------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRYTQYMASAIADP 466
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.420e-16
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVADP 554
            +WCD  E KLW++++WK  P   S+  Q+  ++VLDD+KC +D  F  + K+  NT    IP  L  + QP D ML+K+MKR +RG YTA +A    DP
Sbjct:  379 SWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP 477
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.790e-16
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVAD 551
            +W D  E   W+  +WK  P   S+  Q+  ++VLDD+KC +D+ F  + K+  NT    IP  LT + QP D +L+K+MKR +RG+YTA+SA+ VAD
Sbjct:    9 SWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVAD 106
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.110e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVAD 551
            +W D  E   W+  +WK  P   S+  Q+  ++VLDD+KC +D+ +  + K+  NT   +IP  LT + QP D ML+K+MKR +RG+YTA+SA+ VAD
Sbjct:  225 SWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVAD 322
[Close]
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.610e-16
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:  261 NWCDNGEWKLWLRENWKSCPRT-SLFSQQSSVMVLDDYKCDRDQRFQES*KKVVNTDTNLIPCSLTAVNQPCDCMLDKEMKRGVRGRYTAWSATTVAD 551
            +W D  E   W+  +W   P   S+  Q+  ++VLDD+KC +D+ F  + K   NT    IP  L  + QP D ML+K+MKR +RG+YTA+SA+ VAD
Sbjct:    9 SWSDQRECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVAD 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20658.5364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT06_9PHAE6.920e-2359.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.540e-2260.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE9.200e-1942.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE7.770e-1844.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE1.970e-1744.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE6.370e-1745.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.420e-1643.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8W0_9PHAE4.790e-1642.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE8.110e-1642.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE8.610e-1641.84DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20658contigH-paniculata_contig20658:2762..3315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size556
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929539.180374-CDS-H-paniculata_contig20658:2761..31151622929539.180374-CDS-H-paniculata_contig20658:2761..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20658 2762..3115 +
1691480904.514562-CDS-H-paniculata_contig20658:2761..31151691480904.514562-CDS-H-paniculata_contig20658:2761..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20658 2762..3115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929539.21067-UTR-H-paniculata_contig20658:3115..33151622929539.21067-UTR-H-paniculata_contig20658:3115..3315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20658 3116..3315 +
1691480904.528415-UTR-H-paniculata_contig20658:3115..33151691480904.528415-UTR-H-paniculata_contig20658:3115..3315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20658 3116..3315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20658.5364.1prot_H-paniculata_contig20658.5364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20658 2762..3115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20658.5364.1

>prot_H-paniculata_contig20658.5364.1 ID=prot_H-paniculata_contig20658.5364.1|Name=mRNA_H-paniculata_contig20658.5364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
ILRSSYFLNLRRQGEGALCTVHRCNGRWTKGDFAHRFPEHAFHPSHVVSH
GEAACTAKGFRCVGNQSGQPQPVWAPPEWHVVRGARTTGVTMGSGSCGCG
KTGRVAPGQACLASNRA*
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mRNA from alignment at H-paniculata_contig20658:2762..3315+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20658.5364.1 ID=mRNA_H-paniculata_contig20658.5364.1|Name=mRNA_H-paniculata_contig20658.5364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at H-paniculata_contig20658:2762..3315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCGTTCCTCCTACTTTCTCAACCTCCGCAGGCAAGGAGAAGGGGC
GCTTTGCACTGTACATCGCTGTAATGGGCGATGGACGAAAGGTGACTTCG
CGCATCGCTTTCCAGAGCACGCCTTTCACCCCTCCCACGTAGTCTCACAC
GGGGAGGCCGCCTGCACCGCGAAAGGGTTCCGTTGCGTGGGAAATCAGTC
CGGCCAACCGCAGCCGGTGTGGGCACCCCCCGAATGGCATGTCGTACGAG
GTGCGCGAACAACTGGTGTGACAATGGGGAGTGGAAGCTGTGGCTGCGGG
AAAACTGGAAGAGTTGCCCCAGGACAAGCTTGTTTAGCCAGCAATCGAGC
GTGATGGTGCTCGACGACTACAAGTGCGACCGCGACCAGAGGTTCCAGGA
GAGCTGAAAGAAGGTGGTCAACACGGATACTAACCTCATTCCCTGCAGCT
TAACAGCGGTTAACCAGCCTTGCGACTGCATGCTCGACAAGGAGATGAAG
CGCGGGGTGCGCGGAAGATACACTGCCTGGAGCGCCACTACCGTGGCAGA
CCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20658:2762..3315+

>mRNA_H-paniculata_contig20658.5364.1 ID=mRNA_H-paniculata_contig20658.5364.1|Name=mRNA_H-paniculata_contig20658.5364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig20658:2762..3315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCGTTCCTCCTACTTTCTCAACCTCCGCAGGCAAGGAGAAGGGGC
GCTTTGCACTGTACATCGCTGTAATGGGCGATGGACGAAAGGTGACTTCG
CGCATCGCTTTCCAGAGCACGCCTTTCACCCCTCCCACGTAGTCTCACAC
GGGGAGGCCGCCTGCACCGCGAAAGGGTTCCGTTGCGTGGGAAATCAGTC
CGGCCAACCGCAGCCGGTGTGGGCACCCCCCGAATGGCATGTCGTACGAG
GTGCGCGAACAACTGGTGTGACAATGGGGAGTGGAAGCTGTGGCTGCGGG
AAAACTGGAAGAGTTGCCCCAGGACAAGCTTGTTTAGCCAGCAATCGAGC
GTGAATACTCCGTTCCTCCTACTTTCTCAACCTCCGCAGGCAAGGAGAAG
GGGCGCTTTGCACTGTACATCGCTGTAATGGGCGATGGACGAAAGGTGAC
TTCGCGCATCGCTTTCCAGAGCACGCCTTTCACCCCTCCCACGTAGTCTC
ACACGGGGAGGCCGCCTGCACCGCGAAAGGGTTCCGTTGCGTGGGAAATC
AGTCCGGCCAACCGCAGCCGGTGTGGGCACCCCCCGAATGGCATGTCGTA
CGAGGTGCGCGAACAACTGGTGTGACAATGGGGAGTGGAAGCTGTGGCTG
CGGGAAAACTGGAAGAGTTGCCCCAGGACAAGCTTGTTTAGCCAGCAATC
GAGCGTGA
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