mRNA_H-paniculata_contig20641.5363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A7N2KXD4_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KXD4_QUELO) HSP 1 Score: 115 bits (287), Expect = 9.240e-23 Identity = 67/173 (38.73%), Postives = 104/173 (60.12%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI--IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCF 1169
L S++++KD+G+A Y LG I D+ K+ L + Q Y + +ERF + K I P +A+N ++ + PKT +E E++ PY AVG+LM+A TR DI AV ++F N G+AH +AV +IL+YL TAD + Y G D + M+ Y+D+D+ S+ R+ + Y F
Sbjct: 1342 LSSNFEMKDMGEADYILGVKILRDRSKKLLGLSQQTYIKKVLERFQMHNCKPIDTP-VAKNESLSLDMCPKTQDEKEKMASVPYANAVGSLMYAMMCTRPDICYAVGLVSRFQSNPGLAHWKAVKRILRYLKGTADYILCYQGSD--LRMIDYSDADWGSDLDERKSTSGYAF 1511
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A1Y1LYU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LYU4_PHOPY) HSP 1 Score: 114 bits (286), Expect = 1.030e-22 Identity = 64/184 (34.78%), Postives = 107/184 (58.15%), Query Frame = 3
Query: 624 DPKSWTSCVADLRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI--IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCF 1169
D + T L S++K+KD+G+AR+ LG IT D++ +K+ +DQ Y S +++F + + P++ IN P + +EAE++ PY+EAVG+L++AA ++R DI AV +++ N G+ H A +I++YL T + +DGQ +++ YADSD+ +N RR T Y F
Sbjct: 835 DVTAKTRLKNQLMSEFKVKDIGEARFVLGMQITRDRKNKKIWLDQQSYVESLLKKFKMWDCNPVDTPALLGEKLSINMC-PNSEDEAEKMSRVPYQEAVGSLLFAAQVSRPDISFAVNNVSRYTRNPGLTHWTATKRIMRYLRGTIQYKLEFDGQRSS-QVIGYADSDWANNVDDRRSITGYAF 1016
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A2N9G1Z4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G1Z4_FAGSY) HSP 1 Score: 114 bits (284), Expect = 1.530e-22 Identity = 65/173 (37.57%), Postives = 102/173 (58.96%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI--IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCF 1169
L S++++KD+G+A Y LG I D+ K+ L + Q Y + +ERF + K I P IA+N ++ N PKT +E E++ PY A+G+LM+A TR DI V ++F N G+AH +AV +IL+YL T D + Y G D + ++ Y+D+D+ S+ R+ + Y F
Sbjct: 699 LSSNFEMKDMGEADYILGVKIFRDRSKKILGLSQQTYVKKVLERFQMSDCKPINTP-IAKNESLSQNMCPKTQDEQEKMARVPYANAIGSLMYAMMCTRPDICYVVGLVSRFQSNPGLAHWKAVKRILRYLNGTIDYVLCYQGSD--LRLIGYSDADWGSDLDERKSTSGYAF 868
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A2P4Y945_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y945_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.700e-22 Identity = 60/172 (34.88%), Postives = 98/172 (56.98%), Query Frame = 3
Query: 642 SCVADLRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGIIKTIMLPSIAENNTMIN---NDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRR 1148
S A + +++KDLG AR+ G I D +++ L I Q Y S + +FG + PS+ + ++ D P++ ++ +++ PYR VG+LM+ A TR DI AV +++ EN G H A +K+++YLL+T D+ I YDG+ G E+ AY+D+D+ N RR
Sbjct: 205 SVKAGISGQFRIKDLGRARFIFGIEINYDMERKALTISQRAYTESIINKFG--QENAKPSLTPLDPSVHLTKADEPQSDDDKAKMKSKPYRSLVGSLMYLACETRPDIAVAVAKLSRYLENPGQRHWDAGIKVVRYLLKTKDVAITYDGR-MGTELTAYSDADWTGNRDDRR 373
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.730e-22 Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = 3
Query: 642 SCVADLRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI--IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRR 1148
S A + ++++KDLG AR+ LG I D ++R L I Q Y S +++FG K + P + + + D P+T E+ +++ PYR VG+LM+ A TR DI AV ++F EN G H A +K+++YLL+T D+ I Y+G G ++ AY+D+D+ N RR
Sbjct: 597 SVKAGIAENFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTP-LEPSVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL-LGTQLEAYSDADWAGNRDDRR 765
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A6A3KFS5_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KFS5_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.940e-22 Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = 3
Query: 642 SCVADLRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI--IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRR 1148
S A + ++++KDLG AR+ LG I D ++R L I Q Y S +++FG K + P + + + D P+T E+ +++ PYR VG+LM+ A TR DI AV ++F EN G H A +K+++YLL+T D+ I Y+G G ++ AY+D+D+ N RR
Sbjct: 645 SVKAGIAENFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTP-LEPSVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL-LGTQLEAYSDADWAGNRDDRR 813
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: UPI0014482594 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014482594) HSP 1 Score: 103 bits (258), Expect = 2.280e-21 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI------IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCFYF 1175
L+ ++++KDLG+A+ LG I D++ +KL + Q Y + ++RFGI I T + P + TM PK E E + PY VG+LM A TR DI +AV +++ N G H +AV IL+Y+ T D+G+ ++ Q+ +V Y DSD+ + RR T Y F F
Sbjct: 18 LKEEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKRVLQRFGIDKKTKPISTPLAPHFKLSTTM----SPKDETEQEYMSRVPYANVVGSLMHAMVCTRPDISQAVGVISRYIHNPGNEHWQAVKWILRYIHSTVDVGLVFE-QEGNRSVVGYCDSDFAGDLDKRRSITGYVFTF 191
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: UPI001131AAB8 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001131AAB8) HSP 1 Score: 104 bits (259), Expect = 1.020e-20 Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGI---IKTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCFYF 1175
L+ ++++KDLG+A+ LG I D++ +KL + Q Y + ++RFGI K + P +A + + P E E + PY VG+LM+A TR DI +AV +++ N G H +AV IL+Y+ T D+G+ ++ +D +V Y DSD+ + RR T Y F F
Sbjct: 49 LKKEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKRVLQRFGIDDKTKPVSTP-LASHFKLSTTMSPMDEAEREYMSKVPYANVVGSLMYAMVCTRPDISQAVGVISRYMHNPGKEHWQAVKWILRYIHNTVDVGLVFEQED-NQSVVGYCDSDFAGDLDKRRSTTGYVFTF 222
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.510e-19 Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGIIKTIMLPSIAENNTMINN-DGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRR 1148
L+S +K+K+LG+A++ LG I D+ L + Q Y V RF + + E ++ P T E E++R PY+ +G+L++ T TR D+ V ++F EN G H +A +++L+YL T D GI Y G + + Y D+D+ SN RR
Sbjct: 126 LKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAVLEVYTDADWGSNLDGRR 290
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RYL1_CAJCA) HSP 1 Score: 103 bits (258), Expect = 2.510e-19 Identity = 60/174 (34.48%), Postives = 96/174 (55.17%), Query Frame = 3
Query: 657 LRSDYKLKDLGDARYYLGCHITPDKQKRKLKIDQHLYARSTVERFGII---KTIMLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPRAVRTTAKFCENLGVAHNRAVVKILQYLLRTADLGIAYDGQDCGVEMVAYADSDYPSNSRWRRW*TKYCF 1169
L ++++KDLG+A+ LG I+ D++ +L + Q Y + ++RFGI K + P +A + + N P+ + E + PY AVG+LM+A TR DI AV +++ N G H +AV IL+Y+L T D+G+ + + G +V Y DS+Y + RR T Y F
Sbjct: 798 LNGEFEMKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGISDESKPVSTP-LASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQEQDGQNVVGYCDSNYAGDLDNRRSTTGYVF 970 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20641.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20641.5363.1 >prot_H-paniculata_contig20641.5363.1 ID=prot_H-paniculata_contig20641.5363.1|Name=mRNA_H-paniculata_contig20641.5363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MLPSIAENNTMINNDGPKTSEEAEEIRVFPYREAVGALMWAATMTRSDIPback to top mRNA from alignment at H-paniculata_contig20641:1051..3038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20641.5363.1 ID=mRNA_H-paniculata_contig20641.5363.1|Name=mRNA_H-paniculata_contig20641.5363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-paniculata_contig20641:1051..3038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20641:1051..3038+ >mRNA_H-paniculata_contig20641.5363.1 ID=mRNA_H-paniculata_contig20641.5363.1|Name=mRNA_H-paniculata_contig20641.5363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig20641:1051..3038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |