mRNA_H-paniculata_contig2063.5358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2063.5358.1
Unique NamemRNA_H-paniculata_contig2063.5358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A6H5J8Z2_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J8Z2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.340e-28
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEVEYPKAYLNC 234
            RLVHHRDPVPHLP  +WGY HP TEVFY+ +Q++Y VC+++GED +CSNQFW +  F  I DHL YL V Y  AY+ C
Sbjct:  285 RLVHHRDPVPHLPLEAWGYHHPPTEVFYTEDQSSYQVCNKSGEDDTCSNQFWAI--FGNIEDHLWYLVVNYSTAYMQC 360          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A7S3C3K0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C3K0_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 3.480e-19
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYL 201
            RL HHRDPVPH+P  S G+ H  TEVFY  +  +Y VCD +GED SCSNQ+W   +   ISDHL YL
Sbjct:  116 RLTHHRDPVPHVPLQSMGFQHVGTEVFYDEDNDSYKVCDGSGEDSSCSNQYWAETS---ISDHLSYL 179          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A7S1JE99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JE99_9EUGL)

HSP 1 Score: 85.1 bits (209), Expect = 4.440e-18
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEVEYP 216
            RL H RDPVPHLP TS GY HPS+EVFY  N T Y+VC+ +GEDP CS QF V      I DH  Y+ V  P
Sbjct:  228 RLTHWRDPVPHLPPTSLGYRHPSSEVFYDENSTNYLVCNRSGEDPDCSAQFSVS---LAIQDHQDYMGVHTP 296          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A4D9D459_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D459_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.930e-18
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEV 207
            RLVH+RDPVPHLP  ++G+ H   EVFY+ +QT+Y+VC+++GEDP CS+QF V  +   ++DHL+YL V
Sbjct:  166 RLVHNRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDPQCSDQFLVDLD---VADHLNYLGV 231          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A4D9CWF0_9STRA (Lipase_3 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWF0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.650e-17
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYL 201
            RLVHHRDPVPHLP  S+G+ H   EVFY+ N+T Y +CD TGED  CS+ + + P+   I DHL+YL
Sbjct:  187 RLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPS---IKDHLNYL 250          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: W7U0K9_9STRA (Lipase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0K9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.800e-16
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEV 207
            RLVHHRDPVPHLP  ++G+ H   EVFY+ +QT+Y+VC+++GED  CS+QF V  +   ++DHL+YL V
Sbjct:  510 RLVHHRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDLQCSDQFLVDLD---VADHLNYLGV 575          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A7S1TVG0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVG0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.450e-16
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEVEYPKAYLNC 234
            R+ HH+DPVP +P  ++G+ H STEV+Y      Y VCD TGEDP CSNQ+ +  N+    DHL YL  ++   Y+ C
Sbjct:  208 RITHHKDPVPQMPPAAFGFHHESTEVYYDKFNDDYKVCDGTGEDPECSNQWLLNGNWR---DHLTYLGEDFVAQYMTC 282          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A5A8CJH8_CAFRO (Lipase_3 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJH8_CAFRO)

HSP 1 Score: 73.6 bits (179), Expect = 7.590e-14
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWVLPNFAYISDHLHYLEV 207
            R+VH++D VPHLPF   G+ H   EV+++  QT+Y VCD TGEDP+CS+   +    A ISDHL YL +
Sbjct:  210 RVVHYKDIVPHLPFEWMGFHHSPREVWFNEAQTSYQVCDGTGEDPNCSDSLTIA---ASISDHLDYLNL 275          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A7S1C3Q8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3Q8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.840e-13
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQFWV 159
            R+VHH+D +PHLP  S G+ H STE++ +   T YVVCD +GEDP+CS+  W+
Sbjct:  218 RVVHHKDIIPHLPLESMGFWHTSTEIWSNEQATAYVVCDGSGEDPTCSDSVWL 270          
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Match: A0A5A8DIP6_CAFRO (Lipase_3 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DIP6_CAFRO)

HSP 1 Score: 63.2 bits (152), Expect = 2.980e-11
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQ 150
            R+VH++D VPHLPF   G+ H   EV+++  QT+Y VCD TGEDP+C+ +
Sbjct:   48 RVVHYKDIVPHLPFEWMGFHHSPREVWFNEAQTSYQVCDGTGEDPNCATR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2063.5358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8Z2_9PHAE9.340e-2861.54Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3C3K0_9EUKA3.480e-1958.21Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1JE99_9EUGL4.440e-1858.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4D9D459_9STRA8.930e-1855.07Lipase_3 domain-containing protein n=1 Tax=Nannoch... [more]
A0A4D9CWF0_9STRA2.650e-1756.72Lipase_3 domain-containing protein n=3 Tax=Monodop... [more]
W7U0K9_9STRA1.800e-1655.07Lipase n=1 Tax=Nannochloropsis gaditana TaxID=7252... [more]
A0A7S1TVG0_9STRA4.450e-1646.15Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A5A8CJH8_CAFRO7.590e-1450.72Lipase_3 domain-containing protein n=2 Tax=Cafeter... [more]
A0A7S1C3Q8_9STRA3.840e-1352.83Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8DIP6_CAFRO2.980e-1152.00Lipase_3 domain-containing protein n=1 Tax=Cafeter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2063contigH-paniculata_contig2063:3381..3614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LBM6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Ec32 ortholog descriptionLipase domain protein
Ec32 orthologEc-27_003400.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.5535948-CDS-H-paniculata_contig2063:3380..36141622929538.5535948-CDS-H-paniculata_contig2063:3380..3614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2063 3381..3614 +
1691480904.2491698-CDS-H-paniculata_contig2063:3380..36141691480904.2491698-CDS-H-paniculata_contig2063:3380..3614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2063 3381..3614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2063.5358.1prot_H-paniculata_contig2063.5358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2063 3381..3614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2063.5358.1

>prot_H-paniculata_contig2063.5358.1 ID=prot_H-paniculata_contig2063.5358.1|Name=mRNA_H-paniculata_contig2063.5358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
RLVHHRDPVPHLPFTSWGYTHPSTEVFYSYNQTTYVVCDETGEDPSCSNQ
FWVLPNFAYISDHLHYLEVEYPKAYLNC
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mRNA from alignment at H-paniculata_contig2063:3381..3614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2063.5358.1 ID=mRNA_H-paniculata_contig2063.5358.1|Name=mRNA_H-paniculata_contig2063.5358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig2063:3381..3614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGGTGCACCACCGCGATCCTGTGCCACATCTGCCCTTCACATCCTG GGGCTATACCCACCCCTCGACGGAAGTCTTCTACAGCTACAACCAAACGA CTTACGTTGTGTGCGACGAGACGGGAGAAGACCCGTCGTGTTCAAACCAG TTTTGGGTGCTGCCTAATTTCGCCTATATCTCTGACCACCTGCACTATCT CGAGGTGGAGTACCCCAAGGCGTACTTGAATTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2063:3381..3614+

>mRNA_H-paniculata_contig2063.5358.1 ID=mRNA_H-paniculata_contig2063.5358.1|Name=mRNA_H-paniculata_contig2063.5358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig2063:3381..3614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGGTGCACCACCGCGATCCTGTGCCACATCTGCCCTTCACATCCTG
GGGCTATACCCACCCCTCGACGGAAGTCTTCTACAGCTACAACCAAACGA
CTTACGTTGTGTGCGACGAGACGGGAGAAGACCCGTCGTGTTCAAACCAG
TTTTGGGTGCTGCCTAATTTCGCCTATATCTCTGACCACCTGCACTATCT
CGAGGTGGAGTACCCCAAGGCGTACTTGAATTGTAGGCTGGTGCACCACC
GCGATCCTGTGCCACATCTGCCCTTCACATCCTGGGGCTATACCCACCCC
TCGACGGAAGTCTTCTACAGCTACAACCAAACGACTTACGTTGTGTGCGA
CGAGACGGGAGAAGACCCGTCGTGTTCAAACCAGTTTTGGGTGCTGCCTA
ATTTCGCCTATATCTCTGACCACCTGCACTATCTCGAGGTGGAGTACCCC
AAGGCGTACTTGAATTGT
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