mRNA_H-paniculata_contig2062.5357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2062.5357.1
Unique NamemRNA_H-paniculata_contig2062.5357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2062.5357.1 vs. uniprot
Match: D7FVZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.670e-8
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  121 ENGTLPRIGSRTFHIPQEALPKEPE-VDLEEFKARLTEGFNLTKHSRSGKA 270
            E  +LPRIGSRTF I   +     + +DLEEFKARLTEGFNL KHSRSGKA
Sbjct:   18 ETSSLPRIGSRTFRISDTSGESARDRLDLEEFKARLTEGFNLVKHSRSGKA 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2062.5357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ1_ECTSI1.670e-866.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2062contigH-paniculata_contig2062:15260..17522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog2880.D7FVZ1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E84P@1,2SEN4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1518
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2062.5357.1prot_H-paniculata_contig2062.5357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2062 15356..16310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.459884-UTR-H-paniculata_contig2062:15259..153551622929538.459884-UTR-H-paniculata_contig2062:15259..15355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2062 15260..15355 +
1691480904.2174146-UTR-H-paniculata_contig2062:15259..153551691480904.2174146-UTR-H-paniculata_contig2062:15259..15355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2062 15260..15355 +
1622929538.5084221-UTR-H-paniculata_contig2062:16310..175221622929538.5084221-UTR-H-paniculata_contig2062:16310..17522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2062 16311..17522 +
1691480904.2408705-UTR-H-paniculata_contig2062:16310..175221691480904.2408705-UTR-H-paniculata_contig2062:16310..17522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2062 16311..17522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.475073-CDS-H-paniculata_contig2062:15355..154421622929538.475073-CDS-H-paniculata_contig2062:15355..15442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 15356..15442 +
1691480904.2262483-CDS-H-paniculata_contig2062:15355..154421691480904.2262483-CDS-H-paniculata_contig2062:15355..15442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 15356..15442 +
1622929538.4924529-CDS-H-paniculata_contig2062:16187..163101622929538.4924529-CDS-H-paniculata_contig2062:16187..16310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 16188..16310 +
1691480904.2336183-CDS-H-paniculata_contig2062:16187..163101691480904.2336183-CDS-H-paniculata_contig2062:16187..16310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 16188..16310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2062.5357.1

>prot_H-paniculata_contig2062.5357.1 ID=prot_H-paniculata_contig2062.5357.1|Name=mRNA_H-paniculata_contig2062.5357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MALIQQPDENGTLPRIGSRTFHIPQEALPKEPEVDLEEFKARLTEGFNLT
KHSRSGKARWVVRTTVCLC*
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mRNA from alignment at H-paniculata_contig2062:15260..17522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2062.5357.1 ID=mRNA_H-paniculata_contig2062.5357.1|Name=mRNA_H-paniculata_contig2062.5357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2263bp|location=Sequence derived from alignment at H-paniculata_contig2062:15260..17522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATATTTGAGCCTACCGTTACGTGTTGTAACGTACGCTGGTGCCGGGCAA
AAAGAAGGAAGAGGGCGGGTATTCCAATTTCCTTCAGGGCGAAGGTATGG
CCCTGATTCAGCAGCCGGATGAGAATGGGACTCTCCCTCGCATCGGGTCT
AGGACATTCCACATTCCGCAGGAGGCACTTCCGGTGAGGTTTAGGTAGTG
CACGCAATAGAGAGGTGAACCGATTTGTTTTTAGAGGGCGAACATGATTT
TTTGGTGCACCAAGAGGATTGATTATCAGGTCGTAGCGGCTGTCGTCCAC
CATGGCAGGAGTTGGTGAATGGGGGCTTGCGTGAGCGTGTTGTTTTTGCA
TTTATTTCTCCAGACAAGACAAAACGCTCTGAAATGACGGGCGCTGCTGG
GACAATAGTGTGACGCGTGACTGACGATTGCTTGCTTCAATTTCTGCATT
TCCTGATGTATGTGGCCGAAGATCAACCTTAAAGCTTTCCCCTAAATTAG
CCATCACGAGCTTTATTGCTGTGCTTCTTTGTTGGCAATCTCAGCAGCTA
GCAGAATACACAGTGCCCCTTTGTTGCTCAGTCCAGCCTGTGCTAATCAT
TGCCCACTTAGTTGCTCAGTTGATCAATCAAAACATCTAGTGAAATATCC
CCAAGTTGATAGGACAGCTGCCCAACGTTTTTGGGTCCTTCTCGTATGTT
GTTATTGTACACGTCTTTTCATGTGATGGCACTTTTTTTTTCCAATGAGT
TGCGTTGTAACGGCGAGGTTTTTGACATGTTTCGTGTTTCATCATCTCGT
CACTTTTGTTGATCAATGTCGTTGCGCGTCTGCGCCTTGCTTCCCCGCCT
GCCTCCCGCTCCCCGCCTCTCGCGTGAACTCTTTTGTTCCAACACTCACT
GATGAATCCCAATGGAAAAATCCAACAGAAGGAACCAGAAGTAGATCTTG
AGGAGTTCAAGGCGAGATTGACGGAAGGCTTCAATCTCACCAAGCACAGT
CGGTCCGGAAAAGCGAGGTGGGTTGTACGTACTACTGTCTGTTTGTGTTA
ATTGAACTGACTGAAGTGTACTCAATACTGTCTGTTATTCACATAAGAGA
TTCAGGTCGCGATTGTGAAAGACTACTAATATACTACAGGGAGGGCTTGA
CAACAAAACTAGGAGGCTGAAGACCTGCCTCGCCATGTGCACGATGAAGC
AACGACAGACATTCAAATCGAAATTGTTGTTTTGTGAAGCTCGCCGAGGT
TCTCCTTTTAGACCCGGTGTGACAGCAATATGTAGCACCGACTACGATGG
TATTGCGTGACACGGGTGTTTTTCCTCCTCTCGTAAGCTCTGCTTTGACT
GACTTGTGCCTAAGAGATGCTGTACTGAATGTCTGTACGCACGCATAGGT
GGGGGCAAGTCGATTGATGATTCGTGATTTCTTTTGGTGTCAGAATTTCG
GGCACCCCGTTAGCTCGCGCTTTTCGCGTGTTCTTGTGTGTGCTGCAGAC
TGACTGTCTTCGGCTCTGTGCCTGCAGCAGAACTGCGATCATGGCCTTAA
TTTATGTCGCCTCTTACTGGCCGCTGTATCATGTCTGATGTGTCGTGAAA
ACTGCGTACATCTACACACTTACAGAAAAGTGCTACATACGTCCATATTT
CATTTTTGCGTTTTTCTATATTTGATTCACGTATTTCTGGACACAATACA
CGTGGAAAAATCTTGAAGTATGAACTCAATATCACATCCGTTGTTGTTCC
GACAGCAGACAAACTGACCAGCACGACTACAATAATAACTGTTGTATTTA
CTGTCCTATACTTACTGTCTGTAGATACAAGCATACACATCCAAGCTAGC
TGATTGGACGCGTGTTTTTTCCGGCGCTTTCGAGGGTCATATCGCAGAGT
CCGTTTTGGGTCCTTTTTTTCAGTAGATTCGATGTGCAGGATGTCCGGTG
AGAGAGGGACGCTGACCCAGGACCTCCTCCAAAACCGCATGGAGTGGGAG
CAGCGATTCCCGTTTGCTGCTCCGGCAGACCGGAGCAGACAGCCGGTCTA
CTACTACTGTTCATGACGAGCAAAAATCGTCGCTTCCTGGCGTTCGTTTC
TGGGGAGGTAAAAACGAGTCTCGATTTGTGTGTACGCTGCACAACACTAC
AGTTACAGTACAGCGAACAGTGCCGTCTGTCTTACCCTGATGAAAGTTCA
GACAGCCACAGCCAACCTATTTGGATGCATACCATTAACGGTCCGCATCT
GCGGCGATGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2062:15260..17522+

>mRNA_H-paniculata_contig2062.5357.1 ID=mRNA_H-paniculata_contig2062.5357.1|Name=mRNA_H-paniculata_contig2062.5357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig2062:15260..17522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCTGATTCAGCAGCCGGATGAGAATGGGACTCTCCCTCGCATCGG
GTCTAGGACATTCCACATTCCGCAGGAGGCACTTCCGATGGCCCTGATTC
AGCAGCCGGATGAGAATGGGACTCTCCCTCGCATCGGGTCTAGGACATTC
CACATTCCGCAGGAGGCACTTCCGAAGGAACCAGAAGTAGATCTTGAGGA
GTTCAAGGCGAGATTGACGGAAGGCTTCAATCTCACCAAGCACAGTCGGT
CCGGAAAAGCGAGGTGGGTTGTACGTACTACTGTCTGTTTGTGTTAAAAG
GAACCAGAAGTAGATCTTGAGGAGTTCAAGGCGAGATTGACGGAAGGCTT
CAATCTCACCAAGCACAGTCGGTCCGGAAAAGCGAGGTGGGTTGTACGTA
CTACTGTCTGTTTGTGTTAA
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