mRNA_H-paniculata_contig2061.5350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: D7G0I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I5_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.080e-94 Identity = 187/242 (77.27%), Postives = 205/242 (84.71%), Query Frame = 3
Query: 942 MADSWEDEEFDLPP-VPPTMVPVSWEDEEEEDLDRAAVAPGVAPKMSAEKAAXXXXXXXXXXXXXXXTRLQLGETAEQRRLRERNRVEEADNDLTEDLFAGSSGAGGKGAGD-ISDLKLKTVQDHVKLAIELSEKMESSKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIAKKKKAHADVFG-DFDADDIDTVGMDYESKYEDFM 1658
MADSWEDEEFDLP VPPT VPVSWEDEEE+ D AVAPG+APKMSA KAAXXXXXXXXX TRLQLGETAEQRRLRERNRVEEADNDLTEDLF G GA G+GAG +S L LK +QDHVKLAIEL+E+M+SSKPA++ AFL E+VTKLS K MT DGLTD+VNHTTMFRDEKR+AE+RI +AKAN N+ ANQRANKKK KKKKAH+DVFG DFD D IDTVGMDYESKY+DFM
Sbjct: 1 MADSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGG-GARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMTAFLKELVTKLSPK-MTADGLTDLVNHTTMFRDEKRQAEERIASAKANKTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDTVGMDYESKYDDFM 240
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A836CNA4_9STRA (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA4_9STRA) HSP 1 Score: 112 bits (279), Expect = 6.830e-24 Identity = 87/247 (35.22%), Postives = 121/247 (48.99%), Query Frame = 3
Query: 948 DSWEDEEFDLPPVPPTMVPVSWEDEEEEDLDRAAVAPGVAPKMSAEKAAXXXXXXXXXXXXXXXTRLQLGETAEQRRLRERNRVEEADNDLTEDLFAGSSGAGGKGA---GDISDLKLKTVQDHVKLAIELSEKME----SSKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIAKKKKAHADVFG---DFDADDIDTVGMDYESKYEDFM 1658
DSWED++F P + P V SW+DEE A P + E+A Q ETAE+RRLRER RVEE+D+ LTEDLF G A A + + LKT QDHVKLA++L EK+ S + A L E++T++ GK ++ + + H F+D K AE++ + ++ Q + KKK HAD+FG D D D + +YE Y+DFM
Sbjct: 2 DSWEDDDFTPPTLVPPKVTQSWDDEEXXXXXXXA-KPTQPTEKQLEQARKAREAEAMRIAAAHEAAQQEAETAEERRLRERRRVEESDHALTEDLFGGGGTAEAAEAPAQAGVEGIPLKTTQDHVKLALDLGEKLSKDGSSGSSGNILALLKELITRVEGK-LSLEETNQLALHLNKFKDAKMVAEQKRQA----ILKKQKAXXXXRNAEKSKKKQHADLFGGAYDGVGDQYDELATNYEDAYDDFM 242
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A7S2C417_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C417_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 6.430e-12 Identity = 73/225 (32.44%), Postives = 112/225 (49.78%), Query Frame = 3
Query: 942 MADSWEDEEFDLPPV----PPTMVPVSWEDEEEEDLDRAAVAPGVAPKMSAEKAAXXXXXXXXXXXXXXXTRLQLGETAEQRRLRERNRVEEADNDLTEDLFAGSSGAGG--KGAGDISDLKLKTVQDHVKLAIELSEKMES--SKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIAKKKKAHADVFG 1592
M D+W+D+EF++ + PP PVS D+EEE G APK+SAEK A + LQ ET ++RRLRER +E AD++LT+DLF G + + K + LK+++DH+ LA ++ E++E+ SK Y+ A L E V K +T L +++ + K EK ++ A + A KK++ K+ K H G
Sbjct: 1 MGDAWDDDEFEVSDLNGGFPP---PVSNWDDEEEFEPPPLPGHGEAPKLSAEKQAKLKNQKNAKKRNDLESALQEEETDDERRLRERLEIENADHELTDDLFGGGAKSETVVKIVQGVEGYSLKSLKDHLTLAHDVIERVENNKSKQNYIHAMLKEFVKKFDDH-LTPGDLGEIIG---ICNASKIAKEKLLKQPTAKKGQGKKKNTATKKEVKKEVKQHEVCHG 218
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: M4BUM2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUM2_HYAAE) HSP 1 Score: 69.3 bits (168), Expect = 3.070e-9 Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 3
Query: 948 DSWEDEEFDLPPVP-PTMVPVSWEDEEEEDLDRAAVAPGVA--------PKMSAEKAAXXXXXXXXXXXXXXXTRL--QLGETAEQRRLRERNRVEEADNDLTEDLFAGSSGAGGKGA-----GDISDLKLKTVQDHVKLAIELSEKMESSKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEK 1487
DSW+D+EF++PPV P + P +W+DEE ED AV P + PK + RL Q ET EQRR RE+ +EEAD ++ D FAG+ GA ++S +L ++ DH + +S ++ +S Y + ++TK S +T D + ++ + ++EK A K
Sbjct: 2 DSWDDDEFEVPPVTQPQISPATWDDEEAEDEPVPAVKPELPAATKALPKPKQLKKMKLKEIEEKQKMEIALAKARLAAQTDETGEQRRAREKASIEEADFEMAIDAFAGAPSKPAAGATNDVDDNVSAFRLLSLADHEQFGDVVSTRLAASNSKYALECIKVILTKASVN-LTADDMKEITTVVNVVKNEKIAAAK 196
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A1Z5JPF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPF2_FISSO) HSP 1 Score: 63.5 bits (153), Expect = 3.200e-7 Identity = 55/168 (32.74%), Postives = 89/168 (52.98%), Query Frame = 3
Query: 1161 TAEQRRLRERNRVEEADNDLTEDLFAGSS----GAGGKGAGDISDLKLKTVQDHVKLAIELSEKMESSKPAYVA-AFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIAKKKKAHADVFGDFDA-DDIDTVGMDYESKY 1646
T ++RR ER R+E ADN+LT+DLF + G AGD+ + LK ++DH+K A +++E M+ + A AF E VT S + D +T+++ + ++EK +A KR +A Q +++ +K AK ++ + FGD D D D G YE +
Sbjct: 95 TPDERRQLERQRIEAADNELTDDLFGADNTKNKATGAAAAGDV--VVLKDLKDHLKHARKVAEAMKKHGNVHFASAFFKECVTS-SKDVLDDDAVTELIKTLNVIKNEKVQAAKRKVKGQA-----QKSKKVDKVAEAKARQKMIETFGDNDKFDQYDEFGERYEDDF 254
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A6T7HVD2_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HVD2_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 3.630e-7 Identity = 54/175 (30.86%), Postives = 95/175 (54.29%), Query Frame = 3
Query: 1161 TAEQRRLRERNRVEEADNDLTEDLFAG----------SSGAGGKGAGDISDLKLKTVQDHVKLAIELSEKMESSKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIA--KKKKAHADVFGDFDA-DDIDTVGMDYESKY 1646
T E+RRL + R+E+AD+ LT+DLF G +G+ GAGD + LK ++DH+K A ++ + +++ ++AA ++ V + S A+ +T++++ + ++EK A K+ V QA + A + K+A K KK A+++GD D D D +G YE +
Sbjct: 99 TIEERRLLAKQRIEDADHALTDDLFGGVDRSGPVGVVDAGSKAMGAGDT--VVLKDLKDHLKHARKVGQCLKAHGKIHLAAAFLKEVIQESSDALDDGAITEIISICNVIKNEKVAASKKK-------VKGQAQKSAKRDKVAETKAKKLSAELYGDNDNYDAYDEMGGAYEDDF 264
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A6V1PD14_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PD14_HETAK) HSP 1 Score: 60.8 bits (146), Expect = 2.670e-6 Identity = 69/214 (32.24%), Postives = 110/214 (51.40%), Query Frame = 3
Query: 948 DSWEDEEFDLPP----VPPTMVPVSWEDEEEEDLDRAAVAPGVAPKMSAEKAAXXXXXXXXXXXXXXXTR-----------LQLGETAEQRRLRERNRVEEADNDLTEDLFAGSSG-------------------AGGKGAGDISDLKLKTVQDHVKLAIELSEKMESSKPAYVAAFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEK 1487
DSWED+EFD+P V P P +W+ A V APK K XXXXXXXXXXXXXX +Q ET E+RR+RER +EEAD++LTE+L +G+ A K + L + +++D + A +L++++ + +V AF EM+ + S +++TTD +++++ + +++K +A K
Sbjct: 2 DSWEDDEFDVPAFNGSVAPPAAPTNWDXXXXXXXXXAPVDDEFAPKEPTVKQKAXXXXXXXXXXXXXXXXXIRKKLAVKLAIQANETDEERRIRERREIEEADHELTEELLSGAGAXXXXXXXXXXXXXXXXXXPATKKQEAGLGALAMDSLEDFMTTAAKLAQRLNGAPNHHVLAFFKEML-RGSTESLTTDDVSELIALANVIKNDKVKAAK 214
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Match: A0A7S2JXZ9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXZ9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.760e-5 Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 3
Query: 1161 TAEQRRLRERNRVEEADNDLTEDLFAGSSGAGGKG-----AGDISDLKLKTVQDHVKLAIELSEKMESSKPAYVA-AFLMEMVTKLSGKAMTTDGLTDVVNHTTMFRDEKREAEKRIETAKANVVNIQANQRANKKKIAKKKKAHADVFGDFDA-DDIDTVGMDYESKY 1646
T E+RR ER RVEEAD+ LT+DLF A GKG AGD + +K ++DH+K A ++ ++ A++ AFL E+V + + + D +++++ + +++K + AK V + +K AK KK ++FG+ D D D G YE +
Sbjct: 97 TPEERRKLERQRVEEADHALTDDLFGAVEAASGKGQVAVSAGD--KVVMKDLKDHLKHARQIGTCVKDHGKAHLTIAFLKEVVQQCK-EVIGDDEISELIKCCNVIKNDK------VLAAKKKVKGQAQKAKKDKAAEAKAKKIQQEMFGESDTYDQYDAYGDAYEDDF 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2061.5350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2061.5350.1 >prot_H-paniculata_contig2061.5350.1 ID=prot_H-paniculata_contig2061.5350.1|Name=mRNA_H-paniculata_contig2061.5350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp MADSWEDEEFDLPPVPPTMVPVSWEDEEEEDLDRAAVAPGVAPKMSAEKAback to top mRNA from alignment at H-paniculata_contig2061:1413..10724- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2061.5350.1 ID=mRNA_H-paniculata_contig2061.5350.1|Name=mRNA_H-paniculata_contig2061.5350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9312bp|location=Sequence derived from alignment at H-paniculata_contig2061:1413..10724- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2061:1413..10724- >mRNA_H-paniculata_contig2061.5350.1 ID=mRNA_H-paniculata_contig2061.5350.1|Name=mRNA_H-paniculata_contig2061.5350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig2061:1413..10724- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |