prot_H-paniculata_contig20602.5348.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig20602.5348.1
Unique Name	prot_H-paniculata_contig20602.5348.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	104

Homology

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.330e-27
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  139 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 6.770e-26
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLV 103
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD++
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.790e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 636

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.810e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISL 249

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.130e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 157

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.260e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.360e-25
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.580e-24
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + +  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.370e-24
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+G RR I    G+ QGDG+GP LFC  + PI+ K R +++  G+ L A++DD+ L
Sbjct:  229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISL 332

[Close]

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.350e-24
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 0

Query:    1 LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDTGERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLDDLVL 104
            ++  DC+NAFN+ KR AI+ + A  +P L  ++A+CY E PA  I+ MD+GERR I   +G+ QGDG+GP L C  + PI+ K R +++  G+ L A++DD+ L
Sbjct:   95 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLSCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 198

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig20602.5348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L4Y4_9PHAE	4.330e-27	45.19	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LL14_9PHAE	6.770e-26	44.66	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KJC0_9PHAE	1.790e-25	45.19	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JLG6_9PHAE	1.810e-25	45.19	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KYJ9_9PHAE	6.130e-25	45.19	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JI32_9PHAE	6.260e-25	45.19	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KMQ2_9PHAE	6.360e-25	45.19	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KKQ2_9PHAE	1.580e-24	44.23	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KR59_9PHAE	3.370e-24	44.23	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KUZ8_9PHAE	7.350e-24	44.23	Reverse transcriptase domain-containing protein n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..104 e-value: 3.4E-8 score: 33.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 13.57

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig20602	contig	H-paniculata_contig20602:4187..4498 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig20602.5348.1	mRNA_H-paniculata_contig20602.5348.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig20602 4187..4498 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig20602.5348.1 ID=prot_H-paniculata_contig20602.5348.1|Name=mRNA_H-paniculata_contig20602.5348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
LIALDCTNAFNSAKRAAILEEVAIRIPGLTPFVAKCYGEKPADTIFLMDT
GERRRISSNTGIHQGDGLGPALFCMPVGPILRKSREQFEAPGLELLAFLD
DLVL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom