prot_H-paniculata_contig2060.5345.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2060.5345.1
Unique Name	prot_H-paniculata_contig2060.5345.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	330

Homology

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BLAST of mRNA_H-paniculata_contig2060.5345.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.800e-49
Identity = 105/201 (52.24%), Postives = 131/201 (65.17%), Query Frame = 0

Query:  147 EMGARLDAPAAASFGAVVVAFGFLQVRIRTAIKARTARREYESVVKETRNRMMAGMATEEDLLAAEKRMAQLVIEEDEARKVDILGAPFNIVIPDGGGDSSGSSAPSASATFTSTG------------------MQSRVRDAAERRAETDSRDRQFREEEMGPAATLKVAALWLVLISQLWLLLVFWNDPMGDTASILLRD 329
            EMGAR+D  A ASF AVVVAF FLQ RIRTA++ARTARR YE + K  + + +AG A E+++   E+RM+QL+ EE EARKVDI G PFN+VIPDGG      +A   +    S+G                   Q  +R+  + +AE+D R R+ REEEM   ATLKVAALWLVLISQLWLL+V WNDPMG  +S  L+D
Sbjct:  153 EMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQADEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGELGDGGRAAGEGGQQQQQLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353

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BLAST of mRNA_H-paniculata_contig2060.5345.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.210e-18
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 0

Query:  267 VRDAAERRAETDSRDRQFREEEMGPAATLKVAALWLVLISQLWLLLVFWNDPMGDTASILLRD 329
            +R++ + +AE+D RDR+ REEEM P ATLKVAALWLVLISQLWLL+V WNDPMG  +S  L+D
Sbjct:   72 IRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2060.5345.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2060.5345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L6Y5_9PHAE	3.800e-49	52.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXN2_ECTSI	3.210e-18	66.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..24
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 156..174
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 25..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 293..315
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 175..292
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 118..136
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 137..155
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 316..329
None	No IPR available	TMHMM	TMhelix		coord: 118..137
None	No IPR available	TMHMM	TMhelix		coord: 5..24
None	No IPR available	TMHMM	TMhelix		coord: 293..315
None	No IPR available	TMHMM	TMhelix		coord: 152..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2060	contig	H-paniculata_contig2060:5614..10638 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2060.5345.1	mRNA_H-paniculata_contig2060.5345.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2060 5364..12489 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2060.5345.1 ID=prot_H-paniculata_contig2060.5345.1|Name=mRNA_H-paniculata_contig2060.5345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
MLGSVVTVPGSVLLTAMVMDLGVARSAMLVKTSPAAFGCASPFCTSNRRF
QQHHLTDGYRSIRSLDNPGDGSLLARFAVIQCTMRRMNRRATSTTSRMSM
PTSTEEMEGRLRTTGRQLGISVVSGFSGFLVNAASATAESLPGAAPEMGA
RLDAPAAASFGAVVVAFGFLQVRIRTAIKARTARREYESVVKETRNRMMA
GMATEEDLLAAEKRMAQLVIEEDEARKVDILGAPFNIVIPDGGGDSSGSS
APSASATFTSTGMQSRVRDAAERRAETDSRDRQFREEEMGPAATLKVAAL
WLVLISQLWLLLVFWNDPMGDTASILLRD*