mRNA_H-paniculata_contig10836.534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10836.534.1
Unique NamemRNA_H-paniculata_contig10836.534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10836.534.1 vs. uniprot
Match: A0A6H5KRZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ3_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 8.460e-68
Identity = 210/535 (39.25%), Postives = 266/535 (49.72%), Query Frame = 1 
Query:    1 VLLDRERERADRLERAKHEEDEALSDELRDIMATVGRGADGIGSNGDAKSPSPSASHQPPLPSTQTTGSSNGRGWVTTVIAGEPKTNWVGAVAAEGNGHSISPRDEKSPRAPAAEAVKTAISSDEDIGREIIGEGLLPLSGSIGGRGDDGGRRRSVGGSVSPRGSGGIDDGGDEVEPSTLAAGSDRV--LELYGRVGDETRQQQQQYQGALKARVVELELQRREAVDALKAKMDQSLRLEVQVEQLKNVVQSLSNTSATDDAALQWGDASTASTAATRTTDLSCLLRDTPGIHPSVMLMLHRTPWAEGVSEGIRKEEAVFEWQAKDSRGEWGSGQTSLPPELASLPAHPPGPLQELSPSPLPPPLLTSSGQLLSSPP-----------------SPDSDAGTFSWARGRRSPEPSHSRPDDRAVGVKEDGGXXXXXXGGKFERLRGKIGEAGAGLGAGGGRWGGGRGSSLVTDEAMTRRFVVGDVHLPSDHWEWVGGWMLDSETEASTDPDGWVYGYTPSVIAEKSRGNVIPRSD 1548
            V LD+ER RADRL R + EE+EALS ELRDIMATV  G+D  G+        P+A+         +  + N   + +  I  +   N        G      P          A A  + I S+  +GR   G+             DD     + G      G+       +E E    +A    V   +     G   R+Q     GAL+ARVVELELQR EA D ++ K D+S+RLEVQVEQLKN+VQSLS+ S+ ++    WG  S+A+T    T DL  LLRD PG+ PSV+L+LHRTPWA+ V EGIRKEE+ FEWQ KDSRG W S   + P EL+SLP H       L+  P PPP        LSS P                 SP      F  A   R      +  D RA G++E           K       +  AG GLG G    GG  G  +VTDE +T RF + DV LPS HWEWVGGWM+DSETEAS+D DGW+YG +PS I+E + G     S+
Sbjct:   67 VNLDQERARADRLARERMEEEEALSGELRDIMATVTVGSDVFGT--------PAAAXXXXXXXPTSPAAGNDLSFDSESIERQQVANKTAVDKDPGQ----EPPXXXXXXXXXAIASASGIFSEWRLGRVRGGKAS-----------DDDRNGNNAGTGSGKTGAASETMTAEEQEKLKDSADGPGVDGQKSSSNGGGSAREQAV---GALRARVVELELQRAEAADEMREKTDRSIRLEVQVEQLKNIVQSLSHASSREETQA-WGQGSSATTRTQETVDLDPLLRDVPGVDPSVLLLLHRTPWADVVLEGIRKEESCFEWQGKDSRGAWSSRLGAFPTELSSLPLH------HLA-GPHPPPQXXXXXXXLSSLPQSXXXXXXXXXXXXRSRSPTLALTGFVTADHARCEAGGQAGSDARAGGLRE-----------KIGGAMAAVAAAGRGLGGG---IGGAPGWRMVTDEGVTFRFELDDVGLPSHHWEWVGGWMVDSETEASSDQDGWIYGRSPSEISEIALGRTSSHSN 553
[Close]
BLAST of mRNA_H-paniculata_contig10836.534.1 vs. uniprot
Match: D7FLV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.050e-32
Identity = 128/339 (37.76%), Postives = 164/339 (48.38%), Query Frame = 1 
Query:    1 VLLDRERERADRLERAKHEEDEALSDELRDIMATVGRGADGIGSNGDAKSPS---PSASHQPPLPSTQTTGSSNGRGWVTTVIAGEPKTNWVGAVAAEGNGHSISPRDEKSPRAPAAEAVKTAISSDEDIGREIIGEGLLPLSGSIGGRGDDGGRRRSVGGSVSPRGSGGIDDGGDEVEPSTLAAGSDRVLELY------------GRVGDETRQQQQQYQGALKARVVELELQRREAVDALKAKMDQSLRLEVQVEQLKNVVQSLSNTSATDDAALQWGDASTASTAATRTTDLSCLLRDTPGIHPSVMLMLHRTPWAEGVSEGIRKEEAVFEWQAKD 972
            V LD+ER RADRL R + EE+EALS ELRDIMATV  G+D   +   A       P+A +  P  S                     +        A G     +P +        A A  + I S+  +GR              GGR  D  R  +  G+           GG +  P++                        G         ++Q  GAL+ARVVELELQR EA D ++ K D+S+RLEVQVEQLKN+VQSLS+ S+ ++    WG  S  +T    T DL  LLRD PG++PSV+L+LHRTPWA+ V EGIRKEEA FEWQ KD
Sbjct:   64 VNLDQERARADRLARERTEEEEALSGELRDIMATVTVGSDVSDTPAAAXXXXXXXPAAGNDLPFDSESI------------------ERQQAADKTAVGREPGQAPPEXXXXXXXXAIASASGIFSEWRLGRVR------------GGRATDDDRNGNNAGT-----------GGGKPGPASETKXXXXXXXXXXXXXXXXXXXQKGSXXXXXXXAREQAAGALRARVVELELQRAEAADEMREKTDRSIRLEVQVEQLKNIVQSLSHASSREETQ-GWGQGSATTTRIQGTVDLDPLLRDVPGVNPSVLLLLHRTPWADVVLEGIRKEEACFEWQGKD 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10836.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRZ3_9PHAE8.460e-6839.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV6_ECTSI1.050e-3237.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10836contigH-paniculata_contig10836:369..6466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1736
Cds size1734
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10836.534.1prot_H-paniculata_contig10836.534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10836 369..6466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928787.6726944-CDS-H-paniculata_contig10836:368..10881622928787.6726944-CDS-H-paniculata_contig10836:368..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 369..1088 +
1691480619.8543963-CDS-H-paniculata_contig10836:368..10881691480619.8543963-CDS-H-paniculata_contig10836:368..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 369..1088 +
1622928787.6884272-CDS-H-paniculata_contig10836:1780..18791622928787.6884272-CDS-H-paniculata_contig10836:1780..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 1781..1879 +
1691480619.866494-CDS-H-paniculata_contig10836:1780..18791691480619.866494-CDS-H-paniculata_contig10836:1780..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 1781..1879 +
1622928787.7038615-CDS-H-paniculata_contig10836:2214..23691622928787.7038615-CDS-H-paniculata_contig10836:2214..2369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 2215..2369 +
1691480619.8763008-CDS-H-paniculata_contig10836:2214..23691691480619.8763008-CDS-H-paniculata_contig10836:2214..2369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 2215..2369 +
1622928787.7251892-CDS-H-paniculata_contig10836:4040..44421622928787.7251892-CDS-H-paniculata_contig10836:4040..4442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 4041..4442 +
1691480619.884696-CDS-H-paniculata_contig10836:4040..44421691480619.884696-CDS-H-paniculata_contig10836:4040..4442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 4041..4442 +
1622928787.739283-CDS-H-paniculata_contig10836:5181..54761622928787.739283-CDS-H-paniculata_contig10836:5181..5476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 5182..5476 +
1691480619.9014711-CDS-H-paniculata_contig10836:5181..54761691480619.9014711-CDS-H-paniculata_contig10836:5181..5476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 5182..5476 +
1622928787.756872-CDS-H-paniculata_contig10836:6403..64661622928787.756872-CDS-H-paniculata_contig10836:6403..6466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 6404..6466 +
1691480619.9123719-CDS-H-paniculata_contig10836:6403..64661691480619.9123719-CDS-H-paniculata_contig10836:6403..6466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10836 6404..6466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10836.534.1

>prot_H-paniculata_contig10836.534.1 ID=prot_H-paniculata_contig10836.534.1|Name=mRNA_H-paniculata_contig10836.534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=578bp
VLLDRERERADRLERAKHEEDEALSDELRDIMATVGRGADGIGSNGDAKS
PSPSASHQPPLPSTQTTGSSNGRGWVTTVIAGEPKTNWVGAVAAEGNGHS
ISPRDEKSPRAPAAEAVKTAISSDEDIGREIIGEGLLPLSGSIGGRGDDG
GRRRSVGGSVSPRGSGGIDDGGDEVEPSTLAAGSDRVLELYGRVGDETRQ
QQQQYQGALKARVVELELQRREAVDALKAKMDQSLRLEVQVEQLKNVVQS
LSNTSATDDAALQWGDASTASTAATRTTDLSCLLRDTPGIHPSVMLMLHR
TPWAEGVSEGIRKEEAVFEWQAKDSRGEWGSGQTSLPPELASLPAHPPGP
LQELSPSPLPPPLLTSSGQLLSSPPSPDSDAGTFSWARGRRSPEPSHSRP
DDRAVGVKEDGGGGGGGSGGKFERLRGKIGEAGAGLGAGGGRWGGGRGSS
LVTDEAMTRRFVVGDVHLPSDHWEWVGGWMLDSETEASTDPDGWVYGYTP
SVIAEKSRGNVIPRSDIPSNGSENTHQGHFFPGARPQNNPKNILDNKPRL
RRRRLVRTNQHGNSCAKTQPPGSYAASP
back to top

mRNA from alignment at H-paniculata_contig10836:369..6466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10836.534.1 ID=mRNA_H-paniculata_contig10836.534.1|Name=mRNA_H-paniculata_contig10836.534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6098bp|location=Sequence derived from alignment at H-paniculata_contig10836:369..6466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTCCTGGACCGCGAACGGGAACGAGCCGATCGTCTCGAGCGCGCCAA
GCATGAAGAGGATGAAGCCCTCTCCGACGAGCTAAGGGACATCATGGCCA
CTGTCGGTCGCGGCGCCGATGGTATCGGCAGCAACGGCGACGCCAAGTCC
CCCTCCCCGAGCGCATCTCACCAGCCACCCCTTCCATCAACTCAGACAAC
CGGGAGCAGTAACGGACGGGGATGGGTCACCACGGTTATCGCAGGCGAAC
CGAAAACGAACTGGGTCGGTGCTGTCGCCGCGGAGGGCAACGGCCATAGT
ATTAGTCCACGAGATGAAAAGAGCCCAAGAGCTCCTGCTGCCGAGGCGGT
GAAGACAGCAATAAGCAGCGACGAGGACATTGGCAGGGAGATTATAGGAG
AGGGGCTGCTACCCTTGTCGGGTTCGATCGGTGGTCGCGGTGATGATGGA
GGTCGACGCCGCTCGGTCGGCGGGAGTGTATCTCCGCGAGGAAGTGGGGG
AATCGATGATGGTGGCGATGAAGTTGAACCTTCGACCCTCGCTGCTGGGA
GTGACCGCGTGCTCGAGTTGTATGGACGGGTGGGAGATGAGACCAGACAG
CAGCAGCAGCAATATCAAGGAGCGTTGAAGGCGCGGGTAGTGGAGCTGGA
GCTGCAGCGGCGGGAGGCGGTTGACGCACTCAAGGCTAAGATGGACCAGT
CGTTGAGGCTAGAGGTGCAGGTGAAAAGTCAGGTTTTTTCCTGTATTTCG
CCCAAATACCAAAAAAGAAATAGCTGCTGCTGTTTTTTTTTTGTCTGCCC
GTTAGGTTTTTCATTCAAATGGTTGGGATATCTGACTGGTGAGGAGATTG
ACTCTTGGGTTCGTTGATTGTGACTAGTATACTGCAGGGGGGGTCGGTCG
GAAATTATTTCACAATCATCCGCGTGTGTCTGTTCCTTCCATGGATGCGG
ACCTCGTATGCAGTGCGTGCATGTCGTTTTGCATTTGCCCGACGCGTGTG
TCAATGTACGACGCTCTACACGGGACGGTGGCAGTATGATCCACTCCCCG
AATCAAGCGGGCTTCAAGGTGAAATCTAGCCCACACAATCTCATCCATGT
GTGTTCTTCGGCAGCACACATTTTCTCACAAGTATTAATATACGGACGCT
GAGCGTATTGAGGCGTTTCTTTTCTTGTTCCTTGATTTTATCCTCATGTA
AATTCGTTTCCTGAAAAACGTTTGTTTTTTTCTTTTTTCAATGATTTTTT
CGAGTGTCGAGTGCTTTCTTACCCTCATGAAATTGATTCGATTTCCCCCC
CTGCACACAGGTAGAGCAGGGAAAGACTTGTCCCTTCGTTTCCTCTTTTA
TGTTTTTTTTCGATGATTTTCGAACCCACTTTGATTAATTTGATTTTTTC
CCCTGCACACAGGTAGAACAGCTGAAGAACGTGGTGCAGTCTTTGAGCAA
TACCTCTGCTACCGACGACGCCGCTTTGCAATGGGGTGACGCTTCCACGG
CGAGCACGGCGGTAAGAGCATTTCTTAGAACCATTCTTTTAGAACCAAAT
TTTAGAATAAAATTTTATCAACAATTTTTAGAACCAAATTTTAGAACCAA
TTTTTTTAAGCAACTTCTAGAACAAAAAGGAAAGGTCGTGGAGGGACTGT
CAACCTTGCCCACGGTGAAGATACACAACAGAAATTCCCTAAGAGAGAAA
GAGAGGGAAACAACAGTCGAACCGGAACGAAGTAGGGACGAAGCATCAAT
TGCCGGCATATAGTTGAGAAGTTGTTTCGACCTCAATGTGCTGCTTTAGA
CAGTAAATGGACTCTAAATTGAGCTGGCATAAATCTACTCGCCCAGGCCA
CGAGGACGACGGACCTATCTTGCCTGCTTCGAGACACGCCTGGCATACAC
CCTTCCGTGATGCTAATGTTACACCGAACACCTTGGGCGGAGGGGGTGAG
CGAGGGTATTCGCAAAGAGGAGGCCGTGTTCGAGTGGCAGGCCAAGGACA
GGTGATAGCTCAGACCAGCAGTTACTAGCTGTGATAACTTAGACCCGCAG
TTACCAACCATTGTAGCTCAGACCAACGATCACTACCCGGGATAGCCCTG
AGCCATCGTTACAAACCGTAGTAGCTCAGAGTCGCATCATTAATCATGAT
AGCTTCGCCCCGCCAGCGCAAACCACGATAGCTCAGACTCGTAGTCACGG
AAGGTGTTAGCTCGAACCTGTGGTTACCAATTGTGATAGCTCATGTTGTG
GGCCCAGGAGTTGCATACCAGCTCGGCTGCTGGTCTTCTTGCAGCAGTTG
TTACGCACATATTCGTACAGACAATCCGCCCATGATGGATTTCACAGCTC
GGACGAAGGTTTGATTTTCAAGCAATTAACACGCAACGGAACCGTCATGC
TCAAAAGTAGAAATATATGTGGAGGTGCGCAAGTACTCAAAGGTCGAACA
CTCCTCGAAGGTGTGCAGGATATCCATGCTATCGATTTGTGGATTTTGGA
AGGCACCAGGTATCCTCGTGCTGGTAGTTCCAAACACTGCGACATCCTTC
ATCGACAGATGAAGGACCTTCGTCCGAGTTGTGATGGATTTCGCGAAATG
GGAGACGAAAGCATGTAAAAGCGTGCTCTGGAAAATTCTTAGCAGCATCG
TGCTGTTTCCGTTTTCATATCTATTCCACAGCTTGAGTTTAGAGCACTTG
CAAGGTTTTGAAGCATGACATTTTCCCCGTGAAACTGTTCCAAATCGATG
TTTTGAAGCTGGAGTTCCATGATTTTTCGAGTTAAGAACAAAGAATAAAA
CGCGAATGTTCGCATTATAACGAACAATCCGAGAAAAACGTAATTAATAT
TTTCCCCTCAGGTCTTGAGATAAATAGGAAAATCGAGGAAAACAGAGCAA
AATGGAACATGACATGACGCCTAGTTTGCGCTACCTCTTGAACAATTGGT
GCAAATTAAAGAGTCGCGATCGAAAGACAGTTTGTAAGTTCGATATAAAC
CTTCTGTTTATTAGTTTTCTATAACTCGTAGAAACCATTCGGGAAAAAAC
AAATATTCACAAGGTTTCTCTTCGGCGACCTTCGATGTTTTTGCTGGTGT
TCCATGGTTTTTACGAGTTTTTTTAATGGGAAAAACGCGAATATTTGCAC
TGTAAAGATAAACAACTCAAAGGTGGCGGAATTTTTATTTTTTCCTCTTC
TGCCGAGATGACGGGCCTTAACAAAGATAGAAAATGAACAGAATCCATTC
ATTGGGTGTTTCCTCAACCCATTGATGAAAAAAAAAATAGTGTATTCGTG
GCGCAATTTTGTTGCGAACATGGCATTAATGAAACAAAAGTATGTCGTGA
AAACCATGGAGAAAAGGCTGTGTGAAAAATTAGTATATTTTTTGGTGGGG
CCAGCTTGTATGGCATACTATTAGTGACTGACAGATAGTTGACGAGATTT
TCCCGCAACGAAACGTGTTGCGGTATCGCGGGCGATGTGATTTTGGAGAA
AATCAGCCTTAAAGAATGTATGACCATTAACACGGTAACTTAAAAGCTTA
TACCTTGAATCTCTCTCCCCCCCCCCCCGCGCGCACCTACGCTCATGCCC
GCCTCCCTGATCTTCCACGGACCGCCTTCTGCGCACATACACACCTGCAT
GTATACCCATTCCTTAATGCAGCCGAGGAGAGTGGGGCTCAGGACAAACG
TCCCTCCCTCCAGAACTCGCGTCCCTCCCCGCCCACCCCCCTGGTCCACT
GCAAGAACTGTCACCATCACCACTACCACCACCGCTATTGACTTCATCAG
GTCAGCTACTATCATCACCCCCATCCCCTGACTCTGACGCAGGAACCTTT
TCCTGGGCTCGCGGCCGACGGTCGCCGGAGCCCTCGCATTCGAGGCCGGA
TGACCGAGCCGTGGGAGTGAAAGAGGATGGAGGTGGGGGCGGTGGCGGTA
GTGGTGGCAAGTTTGAAAGGCTTCGGGGAAAAATTGGAGAGGCGGGGGCA
GGGCTTGGCGCGGGAGGGGGGAGGTGGGGGGGGGGCAGGGGGTCATCTTT
GGTAACTGACGAAGCGATGACACGGTGAGCTGTTGTAGCTGATGATGATG
GATGAGAGGGAAGGGGGAAGGGGGGGTTGGGATTACACAGAGAGGGGGGG
AACCGAGAAAGAAGAAGGGGTTAGAGGCGTACGGGATCGAAGACAGACAG
AGAGAGAGGGAGGGAGAGAGAGATGATGTACTCCCAGAGAGGAGCGTTTG
GGGCTACGATTCACCTCTTTTTTTTTGCGTCCAGAATATGCTTTACATGT
TGCGACACGAACATTGCGATGCCGAGCTTCGACGTTCCATGTGCGCTCTT
GTATGTTTTCTGCCTAGAGGTACGTCCTATCGATGTGGTAGAGGGGATGA
AGATAGCATGATATGGATACCGGTGATTGTTGCTCGTACAGAGGTGAGTT
ACGTATAAGAACGGTTCAAATCGGGTTGAACCAGTGACATAAATTTTTTA
ACGTCTGTAACGATGCCGGTATATTTTGGATTCTTTCCTCAAGGAAAAAT
GATACATGCTTGGAAAAAAACACAGCCATCGCTAATATTTGAGTAGATTG
TGGACAATTTTCGGTTTCATGACTTTTATAGGGGGGTCATATATCATCAC
TGTCTCGAGTATACCCCTGTCTACCTCGAGCGTACCTTCTTCTGCCTCGA
ATGTGCCCCTTTCTGTCTCGAGTATACGCCTATTCGCCTCGAATTACCCC
CATTCCGTCTCCACCATACCCTCTTCTGCGTCGAATGTACCCTTTTCTAT
CTTGAACCGACAGCCGCTTTGTCGTCGGCGACGTCCACCTCCCAAGCGAC
CACTGGGAGTGGGTTGGCGGCTGGATGCTAGATTCGGAGACCGAAGCTTC
GACCGACCCAGACGGCTGGGTCTACGGCTACACTCCGTCGGTGATCGCGG
AGAAATCTCGGGGCAATGTCATCCCGAGAAGCGATATTCCTTCGAATGGG
TCGGAAAATACTCATCAGGGGCATTTTTTTCCAGGTGCCAGACCGCAGAA
CAATCCGAAGAACATTCTCGATAACAAGCCGCGCTTGCGGAGGAGGCGAT
TGGTGAGGGTGAGAATCGTGACGAAGGTGGAATCGGCGCAAGAAGGCACT
GTGAAATTTCTGGAAATGTTGCGGAGGCGAGTGGAAGCTGTGACATTTGT
GTATATCTGTCTGTCTCTGTTTTGGCTCTAGTTCTTCCGTGTTGCACATT
TTGAGTCGTGTAACGATCAACGGGGGCGGGGCGGGCGGTGGCGTCGAAAT
GGATCAATTAGAAGGCGCGTTCTACAGAACGTTCCACGGAACGTACGCCG
GGGTTCTCCTTTGTAGTATCCCCTGTACAGAGTAAGTCGCGCAGGGCTCA
TTATCTGGTGTAACACCTTGCCTGACAGGATTGTCATGCAATGTTCGGTA
GGGGACGGTATGATGATGTCCCCAGGGGAGCAAGAAAATTTACCTTCACC
GACCCCTTGCGGAACTTGCAACTCGACCTCCCTTGCCTCGGTCGTACTCC
ACTGACTCTCTCTTCGCTTGTTTGGCTCTTGTTTGTCTTGTTGGGTTTCT
TGTGGTGGTTTAACTTGCATACGTGTGCTTTTCGTGATTATGCAGCAGGG
AGCCGCGCTGGCTCTTGCTAGGCTGGGTGGCGGTTGTTGTTGCTGCATAT
GTCGTACGGAGAATGGCAAAACAGGGGAATTACAGTTGCTTATTATTGCG
AAGCATGCCCTGGTCGACGGGCATCACCGGCGCGCTTCTTGTCGACCAAA
TGTTTTCGGGGTTAGAACATTTAATACTTCACATCCCTCCCTCCCTCTAT
TTTAGTCAGTAGAATTTGTACTGATTTTATGCTATTTGTGTTTTACCTAT
CAAGTACAGCTGGTCATCTTACGAGCGTTGGGATCTGTGTCGTGGTGCTA
TCACAGCAATAACGTTTACTTGTTGTGGGTTGCCCATCTCCAACTTTTAC
CCTTTCTTTCGTGATCCTTGCGTTTTGTTTGACAGACTAACCAGCATGGA
AATTCTTGTGCGAAAACTCAGCCACCAGGTAGTTATGCTGCATCACCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10836:369..6466+

>mRNA_H-paniculata_contig10836.534.1 ID=mRNA_H-paniculata_contig10836.534.1|Name=mRNA_H-paniculata_contig10836.534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3468bp|location=Sequence derived from alignment at H-paniculata_contig10836:369..6466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTCCTGGACCGCGAACGGGAACGAGCCGATCGTCTCGAGCGCGCCAA
GCATGAAGAGGATGAAGCCCTCTCCGACGAGCTAAGGGACATCATGGCCA
CTGTCGGTCGCGGCGCCGATGGTATCGGCAGCAACGGCGACGCCAAGTCC
CCCTCCCCGAGCGCATCTCACCAGCCACCCCTTCCATCAACTCAGACAAC
CGGGAGCAGTAACGGACGGGGATGGGTCACCACGGTTATCGCAGGCGAAC
CGAAAACGAACTGGGTCGGTGCTGTCGCCGCGGAGGGCAACGGCCATAGT
ATTAGTCCACGAGATGAAAAGAGCCCAAGAGCTCCTGCTGCCGAGGCGGT
GAAGACAGCAATAAGCAGCGACGAGGACATTGGCAGGGAGATTATAGGAG
AGGGGCTGCTACCCTTGTCGGGTTCGATCGGTGGTCGCGGTGATGATGGA
GGTCGACGCCGCTCGGTCGGCGGGAGTGTATCTCCGCGAGGAAGTGGGGG
AATCGATGATGGTGGCGATGAAGTTGAACCTTCGACCCTCGCTGCTGGGA
GTGACCGCGTGCTCGAGTTGTATGGACGGGTGGGAGATGAGACCAGACAG
CAGCAGCAGCAATATCAAGGAGCGTTGAAGGCGCGGGTAGTGGAGCTGGA
GCTGCAGCGGCGGGAGGCGGTTGACGCACTCAAGGCTAAGATGGACCAGT
CGTTGAGGCTAGAGGTGCAGGTTCTCCTGGACCGCGAACGGGAACGAGCC
GATCGTCTCGAGCGCGCCAAGCATGAAGAGGATGAAGCCCTCTCCGACGA
GCTAAGGGACATCATGGCCACTGTCGGTCGCGGCGCCGATGGTATCGGCA
GCAACGGCGACGCCAAGTCCCCCTCCCCGAGCGCATCTCACCAGCCACCC
CTTCCATCAACTCAGACAACCGGGAGCAGTAACGGACGGGGATGGGTCAC
CACGGTTATCGCAGGCGAACCGAAAACGAACTGGGTCGGTGCTGTCGCCG
CGGAGGGCAACGGCCATAGTATTAGTCCACGAGATGAAAAGAGCCCAAGA
GCTCCTGCTGCCGAGGCGGTGAAGACAGCAATAAGCAGCGACGAGGACAT
TGGCAGGGAGATTATAGGAGAGGGGCTGCTACCCTTGTCGGGTTCGATCG
GTGGTCGCGGTGATGATGGAGGTCGACGCCGCTCGGTCGGCGGGAGTGTA
TCTCCGCGAGGAAGTGGGGGAATCGATGATGGTGGCGATGAAGTTGAACC
TTCGACCCTCGCTGCTGGGAGTGACCGCGTGCTCGAGTTGTATGGACGGG
TGGGAGATGAGACCAGACAGCAGCAGCAGCAATATCAAGGAGCGTTGAAG
GCGCGGGTAGTGGAGCTGGAGCTGCAGCGGCGGGAGGCGGTTGACGCACT
CAAGGCTAAGATGGACCAGTCGTTGAGGCTAGAGGTGCAGGTAGAACAGC
TGAAGAACGTGGTGCAGTCTTTGAGCAATACCTCTGCTACCGACGACGCC
GCTTTGCAATGGGGTGACGCTTCCACGGCGAGCACGGCGGTAGAACAGCT
GAAGAACGTGGTGCAGTCTTTGAGCAATACCTCTGCTACCGACGACGCCG
CTTTGCAATGGGGTGACGCTTCCACGGCGAGCACGGCGGCCACGAGGACG
ACGGACCTATCTTGCCTGCTTCGAGACACGCCTGGCATACACCCTTCCGT
GATGCTAATGTTACACCGAACACCTTGGGCGGAGGGGGTGAGCGAGGGTA
TTCGCAAAGAGGAGGCCGTGTTCGAGTGGCAGGCCAAGGACAGGCCACGA
GGACGACGGACCTATCTTGCCTGCTTCGAGACACGCCTGGCATACACCCT
TCCGTGATGCTAATGTTACACCGAACACCTTGGGCGGAGGGGGTGAGCGA
GGGTATTCGCAAAGAGGAGGCCGTGTTCGAGTGGCAGGCCAAGGACAGCC
GAGGAGAGTGGGGCTCAGGACAAACGTCCCTCCCTCCAGAACTCGCGTCC
CTCCCCGCCCACCCCCCTGGTCCACTGCAAGAACTGTCACCATCACCACT
ACCACCACCGCTATTGACTTCATCAGGTCAGCTACTATCATCACCCCCAT
CCCCTGACTCTGACGCAGGAACCTTTTCCTGGGCTCGCGGCCGACGGTCG
CCGGAGCCCTCGCATTCGAGGCCGGATGACCGAGCCGTGGGAGTGAAAGA
GGATGGAGGTGGGGGCGGTGGCGGTAGTGGTGGCAAGTTTGAAAGGCTTC
GGGGAAAAATTGGAGAGGCGGGGGCAGGGCTTGGCGCGGGAGGGGGGAGG
TGGGGGGGGGGCAGGGGGTCATCTTTGGTAACTGACGAAGCGATGACACG
CCGAGGAGAGTGGGGCTCAGGACAAACGTCCCTCCCTCCAGAACTCGCGT
CCCTCCCCGCCCACCCCCCTGGTCCACTGCAAGAACTGTCACCATCACCA
CTACCACCACCGCTATTGACTTCATCAGGTCAGCTACTATCATCACCCCC
ATCCCCTGACTCTGACGCAGGAACCTTTTCCTGGGCTCGCGGCCGACGGT
CGCCGGAGCCCTCGCATTCGAGGCCGGATGACCGAGCCGTGGGAGTGAAA
GAGGATGGAGGTGGGGGCGGTGGCGGTAGTGGTGGCAAGTTTGAAAGGCT
TCGGGGAAAAATTGGAGAGGCGGGGGCAGGGCTTGGCGCGGGAGGGGGGA
GGTGGGGGGGGGGCAGGGGGTCATCTTTGGTAACTGACGAAGCGATGACA
CGCCGCTTTGTCGTCGGCGACGTCCACCTCCCAAGCGACCACTGGGAGTG
GGTTGGCGGCTGGATGCTAGATTCGGAGACCGAAGCTTCGACCGACCCAG
ACGGCTGGGTCTACGGCTACACTCCGTCGGTGATCGCGGAGAAATCTCGG
GGCAATGTCATCCCGAGAAGCGATATTCCTTCGAATGGGTCGGAAAATAC
TCATCAGGGGCATTTTTTTCCAGGTGCCAGACCGCAGAACAATCCGAAGA
ACATTCTCGATAACAAGCCGCGCTTGCGGAGGAGGCGATTGGTGAGGCCG
CTTTGTCGTCGGCGACGTCCACCTCCCAAGCGACCACTGGGAGTGGGTTG
GCGGCTGGATGCTAGATTCGGAGACCGAAGCTTCGACCGACCCAGACGGC
TGGGTCTACGGCTACACTCCGTCGGTGATCGCGGAGAAATCTCGGGGCAA
TGTCATCCCGAGAAGCGATATTCCTTCGAATGGGTCGGAAAATACTCATC
AGGGGCATTTTTTTCCAGGTGCCAGACCGCAGAACAATCCGAAGAACATT
CTCGATAACAAGCCGCGCTTGCGGAGGAGGCGATTGGTGAGGACTAACCA
GCATGGAAATTCTTGTGCGAAAACTCAGCCACCAGGTAGTTATGCTGCAT
CACCAACTAACCAGCATGGAAATTCTTGTGCGAAAACTCAGCCACCAGGT
AGTTATGCTGCATCACCA
back to top