mRNA_H-paniculata_contig20589.5339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20589.5339.1
Unique NamemRNA_H-paniculata_contig20589.5339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20589.5339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20589contigH-paniculata_contig20589:297..4366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size643
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20589.5339.1prot_H-paniculata_contig20589.5339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20589 405..4326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.4442027-UTR-H-paniculata_contig20589:296..4041622929536.4442027-UTR-H-paniculata_contig20589:296..404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20589 297..404 -
1691480903.3572063-UTR-H-paniculata_contig20589:296..4041691480903.3572063-UTR-H-paniculata_contig20589:296..404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20589 297..404 -
1622929536.5105863-UTR-H-paniculata_contig20589:4326..43661622929536.5105863-UTR-H-paniculata_contig20589:4326..4366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20589 4327..4366 -
1691480903.3942356-UTR-H-paniculata_contig20589:4326..43661691480903.3942356-UTR-H-paniculata_contig20589:4326..4366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20589 4327..4366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.459016-CDS-H-paniculata_contig20589:404..7671622929536.459016-CDS-H-paniculata_contig20589:404..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 405..767 -
1691480903.3657212-CDS-H-paniculata_contig20589:404..7671691480903.3657212-CDS-H-paniculata_contig20589:404..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 405..767 -
1622929536.4720852-CDS-H-paniculata_contig20589:3140..32691622929536.4720852-CDS-H-paniculata_contig20589:3140..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 3141..3269 -
1691480903.3736594-CDS-H-paniculata_contig20589:3140..32691691480903.3736594-CDS-H-paniculata_contig20589:3140..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 3141..3269 -
1622929536.4910572-CDS-H-paniculata_contig20589:4323..43261622929536.4910572-CDS-H-paniculata_contig20589:4323..4326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 4324..4326 -
1691480903.3829951-CDS-H-paniculata_contig20589:4323..43261691480903.3829951-CDS-H-paniculata_contig20589:4323..4326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20589 4324..4326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20589.5339.1

>prot_H-paniculata_contig20589.5339.1 ID=prot_H-paniculata_contig20589.5339.1|Name=mRNA_H-paniculata_contig20589.5339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
MERTNEQTDVVRGWRNGSSFCNAEVKTTSKTPSPSITTTRWRVKISEISP
QIQLESRKCREMIGPAQEYGTRHRDPIPRLEEETQGLRTEITPERRKTGP
LYCMGKWIVVDRRCRWCSRFGRRCCHQFYYHVLPAPTYRYRRACSKYRAC
EYCLSFSSAQVMGL*
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mRNA from alignment at H-paniculata_contig20589:297..4366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20589.5339.1 ID=mRNA_H-paniculata_contig20589.5339.1|Name=mRNA_H-paniculata_contig20589.5339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4070bp|location=Sequence derived from alignment at H-paniculata_contig20589:297..4366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGGGGTACCTCATTGCCGATATTCCAACGTCCACGCTATGGTAAGAT
TGGCAGTGTTTACACAACGTAATAGGGCATTCTAGTGAGGTTGACGATGT
ACATACAACAAACTTTCTATGAGCATTGTCAACCCCACGCAGGGTGGGGA
CGTTGTAATACCTGCAACAAGGTACTCGCAACATATCCTCTGGCCACATG
TGCTAAAAACAATTCACGTACGTCTAGGGCACCTACATCCAAGGGCTGGT
TGCTGTAGCCGCAACACTATTGCTTGATGTAGAGGTGACACAGCTGATAG
ACAGCAGTACAGATATTGTTTCCATTGAGCAGTTGTAGCAGCCAGGTAGA
CAGCGCAAATAGTATGCCGCCGTAGAGTTGCCCTCGGTGACAAGAGAAAC
AGGCAATGCGAGATCATGTAGTAGAGTTGGCGTACTCTTTACGTGATGCA
CTATATTTTTATCTGCGGCACACAATGAAGAGAGCGGGAGATAGCTGGCA
GACACCAGCATATCCCGAGAGTTCCGTAGTGAGCGAAAGCCCCGCGTGGG
TGGCATCCTATTATGAGCGACGACACCCACAGGCACAGCAACAGGGTCTG
CCACAAACAGTCACGTCAGTCACAAAATGAGTGATATCTATCGTAATTGG
TGATAATGCGTTGGGGTTCTTGGAACAAAATTGTTTTTTCCTGTCAGCAT
TTTTTTCGCCGATTAAGAGCGATACTAAAAGTGGGAACCAGCATAGCAGG
CAAAAGTGGTGTATTATGAAAGAGGGATGTGCCTTCAAGTGGGCCACCCA
CTGTAGTAGATACAAGGACTCAACTATCGTAAGACGTTGCGCAGTAGGGG
GACGGTAGGGTCACATCGACTTTACCATCCATAGAACAGTACACACAGCT
GCTGCACCTACCAACTATTCATGAAGTTGTAACAGCAAGAAAATTTGTTC
CGTTGCCTGCAGTCCCCTGTCGCCGAAGTCCGGTCCTTTTTGGTGTATTT
TAAGTTCGCACATACATGTTCATTTTGAGCTGATACACGGTTCATCCTCC
CTGAGTTGGTTTCCGCGACTCTTTCGTTTTGGGCCTCTTTGTGGCAGGAA
AGGACAAACGAACAGACAGACGTCGTACGTGGCTGGCGCAACGGGTCTTC
CTTCTGTAACGCAGAGGTAAAAACAACAAGCAAGACACCCTCACCGTCGA
TCACAACAACGCGATGGAGGGTAAAGGTAAGCGAGCTCGCGGCCATTGTA
AACAGGTTGAGATGAACTCCGAAACTACACAAGGCGCAGTATTATCCACC
GTGTCGCGTCGCCTGTGCACCCCGATCTCGGATATATATCGCTGCGGACA
GTTCCGTGCGAACGAAGAAATTCGCCTGGAAAAAGATGCTCCATAAATAA
AACCTCCTGCATCGCGAGGGAATCAAGAGGCCCGTTTCTTTCAAAGTTGT
TGTGTGATACCGAGTTTTGGCGTAGCTCTTCGTCCACGAACTCTATGCTC
GGTCATCCTCTGCGTTGGTAGGGTGCAACAGGTGAAACAACAGAACATAG
GTGAGCGCCTCGGCCCGAGCCTGTGGTGTGCCTTCCGAGGAAGCACCAGT
ACTCTCCGTCCAACGGCAACATCCAGTCAGGATGTTTTTTTCTCGCCCCC
TTGTGGCAGGTGGCTCCTGGATGTTTCACCTTCCATCGTTCATGTTTAAA
AGTTATATATTGTATCTCCGAGGAGACGTTAAGCATTCATCATCGTCTAT
CGGTCCACAAATAAAGAAAATCATTTTTCTTTCCGTTTGTTTATTAATTT
GTGTTCCAAAACATGGAGAGGAGAAAACTGAAAGTTGCCCCACGCCCACG
GAACCTTTCAGTGCGCCGTTTTTTATTTTGCCGCAAATCGCAAACCAAAA
ATTATCACGCGATTTTCAGCACGTGTGATGTCAATACAGCAATATCCACC
CTTCAAAGTGGCCAGATATATCTTGATCACAAGAGTTTGGATACTCTATT
GGACGGCCCGCTTGTATTGGTGAATACGTGACAACAGCATCGAAGGGGAT
ATATGTATACCGCGAAGACATTCTCCGAAGGCGCGTGATGTGTGCATCGA
TTAGTCGACCCAGCTTTCCGCCGTCCACAGTAATCAAATTGGGCGGGGAA
CATCATGCCTGTCGAGGGCACGTGCTGTATTTGGGAGCGAGGGGCGTGCT
ATCCCTCGCCGTCCACAATGAATGGATTACATAGGCTTCATGCTGGCAAG
AAGTGACCCCAGCAACAACGAAAACATGTACACATTACTCTAAGGGTTTC
CAAAATCGCAGTCACTGAGTCAGTCGTTCGTGCAGACAGACTCGTCAACT
GCCGTGTCGCATGAGTTCCGGTAGCGATCAAAGAGAGCGTTCAGGTGGGT
CGTCGTATCGTCATCTTGCGAGCGAGTCTCACAGATGCATCCAGTGAGAG
GCGGCCACGGTACTGCGACGGCCACCAGCATACCATCGATCAACATGCCA
AAACTGGCATTTAATTTTGTTAGTAAAAAGGGATGAAGCGGTGTGGGGAT
CACGACTGCTCGAAGTGTGCACAAATAACCAAAATAATACGACATCCAAG
TCCAAAACGTAACCTCAACCGTAATCCTGACCCCAGTCACGTACCGAGAT
ACTAAACTTAGCAATGTAGCGTTGGCTGAACTTCACACGCATTCAGGTCG
CAGTAAAAGGCATTGTTTGCAATCGGACGGCGAGCGCAGAGTACCTAAGT
TATGAGGGAACCAAATTCCCACATGTTTGGACTGTAAAAGATACGTGCAA
GGACTGCATCACCTGCAGCTATGACAAAGTGGCAAGGTTGCAGTGGCCTT
GAACATGTCCTCTATCCGGGGCGCATCGTGCGGTGGGACCATAACATTGT
CGGCCATGGGCTTGTCGTCGGCGGTCATACGAACGAGGTAAATTGATACA
AGAATTTTCTACCAAGTCGGGGTAAATAGGGCAGAGTTCCCACAGCATCC
GAATTGGAGCCAATGGCTGGGTTTTCCTTTGGAGTGCATACACGTAGTTC
GTGGAATACTATACCCAATTGCAACAATGGTCGAGAAAGCAGAGAAAGGC
TTCCGTCTGGAGGGACGCAACGAGGACGTTACCATAAATGTGCATTGATG
ACAGCCCCCCCCCCCTCCCCCATGGATCAATCCTTACCTGTTCCTGGAGA
AAGAATTTTATTGCGAGAACGTCTTTCACGTACGCCTTCCTCACTGCGTC
TAACATCAAGGTTCGTTGTTCGGCCATCCTTTAGTGTTCAGCATTAATCG
CCATGCGTAGATGTCATGCAAATCAGCGAAGGCCGGTATCCAAACGCGTG
CACAAAGAGTAAGAGTATAATTGAGCAATGACAGAAAGCCATTGACTCAA
AAGTAGATGAGGAGAGCGTTAGATAGCGAGAGTAGGCTCAGCACAGCGAG
TAATGAAACACGCCGTATTTTAGAACTCAATATGGCATCTATCGCTACTG
CCTGTAATTGGAGTATACTATTTGACACCATTATATCTGTCTCCCACCAC
CCCACAAACATATACCGCCCTTCGTTTCTTCACACATCTCTAAGCACAGA
TCAGCGAGATTTCTCCACAGATACAATTGGAGTCTCGTAAGTGCAGAGAG
ATGATAGGCCCCGCACAGGAGTATGGAACACGGCACCGCGATCCAATCCC
AAGACTCGAAGAGGAAACTCAAGGACTACGCACCGAGATTACACCTGAAC
GGCGGAAGACAGGGCCACTGTACTGTATGGGCAAGTGGATAGTGGTGGAT
CGTCGCTGCCGCTGGTGCTCGAGGTTCGGTCGACGATGCTGCCATCAATT
CTATTATCACGTCTTACCGGCACCGACGTATAGATATCGCCGAGCTTGCT
CAAAATATAGGGCTTGCGAATATTGTTTAAGCTTCAGCTCAGCTCAAGTA
ATGGGTTTGTGATGAGAGACTATGTTTCATGTTATTTTCCATCTGGCTAC
CTTGTGTGTGGTATCATTATTTACAATTATTTTTACTATAGCGAGCATAA
GGCAAAGAAAATCCGAACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20589:297..4366-

>mRNA_H-paniculata_contig20589.5339.1 ID=mRNA_H-paniculata_contig20589.5339.1|Name=mRNA_H-paniculata_contig20589.5339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig20589:297..4366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAAAGGACAAACGAACAGACAGACGTCGTACGTGGCTGGCGCAA
CGGGTCTTCCTTCTGTAACGCAGAGGTAAAAACAACAAGCAAGACACCCT
CACCGTCGATCACAACAACGCGATGGAGGGTAAAGGAAAGGACAAACGAA
CAGACAGACGTCGTACGTGGCTGGCGCAACGGGTCTTCCTTCTGTAACGC
AGAGGTAAAAACAACAAGCAAGACACCCTCACCGTCGATCACAACAACGC
GATGGAGGGTAAAGATCAGCGAGATTTCTCCACAGATACAATTGGAGTCT
CGTAAGTGCAGAGAGATGATAGGCCCCGCACAGGAGTATGGAACACGGCA
CCGCGATCCAATCCCAAGACTCGAAGAGGAAACTCAAGGACTACGCACCG
AGATTACACCTGAACGGCGGAAGACAGGGCCACTGTACTGTATGGGCAAG
TGGATAGTGGTGGATCGTCGCTGCCGCTGGTGCTCGAGGTTCGGTCGACG
ATGCTGCCATCAATTCTATTATCACGTCTTACCGGCACCGACGTATAGAT
ATCGCCGAGCTTGCTCAAAATATAGGGCTTGCGAATATTGTTTAAGCTTC
AGCTCAGCTCAAGTAATGGGTTTGTGAATCAGCGAGATTTCTCCACAGAT
ACAATTGGAGTCTCGTAAGTGCAGAGAGATGATAGGCCCCGCACAGGAGT
ATGGAACACGGCACCGCGATCCAATCCCAAGACTCGAAGAGGAAACTCAA
GGACTACGCACCGAGATTACACCTGAACGGCGGAAGACAGGGCCACTGTA
CTGTATGGGCAAGTGGATAGTGGTGGATCGTCGCTGCCGCTGGTGCTCGA
GGTTCGGTCGACGATGCTGCCATCAATTCTATTATCACGTCTTACCGGCA
CCGACGTATAGATATCGCCGAGCTTGCTCAAAATATAGGGCTTGCGAATA
TTGTTTAAGCTTCAGCTCAGCTCAAGTAATGGGTTTGTGA
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