mRNA_H-paniculata_contig20588.5338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20588.5338.1
Unique NamemRNA_H-paniculata_contig20588.5338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 102 bits (253), Expect = 5.220e-25
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEI 336
            +P++  EAL  P+A+KW+ AMEEE   L +N TW   D    P GRK  + KW+FKRKL +DG   RYKARL+A G++ VEG D+ ET +PV +  ++RT+     E D+++
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQV 138          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q6L4Z3_ORYSJ (Putative ubiquitin carrier protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6L4Z3_ORYSJ)

HSP 1 Score: 108 bits (271), Expect = 5.720e-25
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KLK DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L A H   +  M+ +T  L
Sbjct:  667 PKSISEAYTSPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLKPDGTIEKYKARLIAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTSFL 784          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: G4TTI1_SERID (Related to retrotransposon HobS hobase (N-terminal) (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TTI1_SERID)

HSP 1 Score: 102 bits (254), Expect = 1.850e-24
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETD---ILVTVYVDDLVIA 399
            EP +  EAL  P+ DK+  A  EE RA ++NGTW+     RLP G+KA  ++W+FK K   DGS ++YK R++A G++  EG D+ ET  P AR   LRT+  L A  D+E++    E D   I+V V++DDL++A
Sbjct:    3 EPTTLGEALKRPDGDKYVQAATEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFTPTARFGALRTIIALAALEDWELDVFIYECDNVKIIVPVHIDDLLLA 135          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q2R3I3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R3I3_ORYSJ)

HSP 1 Score: 106 bits (265), Expect = 3.760e-24
Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEH-------DFEIEGMNGETDILVTVYVDD 387
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF T +PVAR++T+R + +L A H       D +   +NGE D  + +Y  D
Sbjct:  791 PKSISEAYASPDADYWKEAVRNEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTRKEGEDFFNTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMYQPD 922          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL)

HSP 1 Score: 105 bits (263), Expect = 4.980e-24
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L A H   +  M+ +T  L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 301          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q5W6N4_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5W6N4_ORYSJ)

HSP 1 Score: 106 bits (264), Expect = 5.040e-24
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L A H   +  M+ +T  L
Sbjct:  535 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 652          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q7XRW0_ORYSJ (OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XRW0_ORYSJ)

HSP 1 Score: 106 bits (264), Expect = 5.120e-24
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  ++V NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L A H   +  M+ +T  L
Sbjct:  672 PKSISEAYASPDADYWKEAVRSEMDSIVANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 789          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q2QMW4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QMW4_ORYSJ)

HSP 1 Score: 106 bits (264), Expect = 5.210e-24
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L A H   +  M+ +T  L
Sbjct: 1276 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 1393          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: UPI001930B141 (hypothetical protein n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930B141)

HSP 1 Score: 103 bits (256), Expect = 5.460e-24
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            EP++  EA++ PEA  W+ A+  E  +++ N TWE  +   LP G K    KWIFKRK+K DGS  +YKARL+A GF   EGED+F+T +PV R++++R +  + A H+ EI  M+ +T  L
Sbjct:  186 EPQNFKEAMSTPEAPFWKEAINSEIESIMHNHTWELVN---LPQGSKPLGCKWIFKRKMKADGSIDKYKARLVAKGFKQREGEDYFDTYSPVTRITSVRMLIAIAAVHNLEIHQMDVKTAFL 304          
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: I1PI69_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PI69_ORYGL)

HSP 1 Score: 103 bits (257), Expect = 5.560e-24
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
            PKS +EA   P+AD W+ A+  E  +++ NGTWE  +    P G K    KW+FK+KL+ DG+  +YKARL+A G++  EGEDFF+T +PVAR++T+R + +L   H   +  M+ +T  L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQNEGEDFFDTYSPVARLTTVRVLLSLATSHGLLVHQMDVKTAFL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015A81C6A5.220e-2545.54uncharacterized mitochondrial protein AtMg00820-li... [more]
Q6L4Z3_ORYSJ5.720e-2544.63Putative ubiquitin carrier protein n=1 Tax=Oryza s... [more]
G4TTI1_SERID1.850e-2443.38Related to retrotransposon HobS hobase (N-terminal... [more]
Q2R3I3_ORYSJ3.760e-2442.22Retrotransposon protein, putative, Ty1-copia subcl... [more]
I1PQ20_ORYGL4.980e-2443.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q5W6N4_ORYSJ5.040e-2443.80Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
Q7XRW0_ORYSJ5.120e-2444.63OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp... [more]
Q2QMW4_ORYSJ5.210e-2443.80Retrotransposon protein, putative, Ty1-copia subcl... [more]
UPI001930B1415.460e-2444.26hypothetical protein n=1 Tax=Solirubrobacter sp. C... [more]
I1PI69_ORYGL5.560e-2442.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20588contigH-paniculata_contig20588:160..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size402
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20588.5338.1prot_H-paniculata_contig20588.5338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20588 570..734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.3474011-UTR-H-paniculata_contig20588:159..2131622929536.3474011-UTR-H-paniculata_contig20588:159..213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 160..213 -
1691480903.3169363-UTR-H-paniculata_contig20588:159..2131691480903.3169363-UTR-H-paniculata_contig20588:159..213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 160..213 -
1622929536.3675451-UTR-H-paniculata_contig20588:446..5691622929536.3675451-UTR-H-paniculata_contig20588:446..569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 447..569 -
1691480903.3274424-UTR-H-paniculata_contig20588:446..5691691480903.3274424-UTR-H-paniculata_contig20588:446..569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 447..569 -
1622929536.3985043-UTR-H-paniculata_contig20588:734..7941622929536.3985043-UTR-H-paniculata_contig20588:734..794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 735..794 -
1691480903.3491638-UTR-H-paniculata_contig20588:734..7941691480903.3491638-UTR-H-paniculata_contig20588:734..794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20588 735..794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.3809638-CDS-H-paniculata_contig20588:569..7341622929536.3809638-CDS-H-paniculata_contig20588:569..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20588 570..734 -
1691480903.3411431-CDS-H-paniculata_contig20588:569..7341691480903.3411431-CDS-H-paniculata_contig20588:569..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20588 570..734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20588.5338.1

>prot_H-paniculata_contig20588.5338.1 ID=prot_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKA
RLLA*
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mRNA from alignment at H-paniculata_contig20588:160..794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20588.5338.1 ID=mRNA_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=635bp|location=Sequence derived from alignment at H-paniculata_contig20588:160..794- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGAAATCTGCGGCAGAAGCATTGAACGTCCCAGAGGCAGATAAATG GCGCGCGGCAATGGAGGAAGAATGGAGGGCATTAGTGAAAAATGGGACAT GGGAAAACGAAGACTCAGGGAGGTTACCCGCAGGGCGGAAGGCGACTCGT ACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGTAGCACGGCACG CTACAAAGCGCGACTGTTGGCTTAAGGCTTTTCACTGGTGGAGGGTGAAG ATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACT GTTTTTACCCTGGTCGCCGAACATGATTTCGAAATAGAAGGCATGAACGT AGATGCGGCGTATTTGAATGCCCTAATAGAGAAAGAGCTCTTTGTTAAGC TAGCCCCCAGTTTTCCCCTTTCTCCCGAGACATGCCGTTTGTGCACCGCC TGCGTAAAAGCCTGTATGGCCTCAAGCAGAGCGACCGTAACTGGAAGAAT ACTCTTGACGTTTTTCTTGTTGGGATAGGAGTCCAGTGTTCCACTACCGA GCCATGCTTGTACTTCTCTCGCGACGAAGAGGGAGAGACAGACATTCTCG TGACCGTCTATGTTGACGACCTGGTCATCGCTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20588:160..794-

>mRNA_H-paniculata_contig20588.5338.1 ID=mRNA_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig20588:160..794- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGAGGGCATTAGTGAAAAATGGGACATGGGAAAACGA
AGACTCAGGGAGGTTACCCGCAGGGCGGAAGGCGACTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGACGGTAGCACGGCACGCTACAAAGCG
CGACTGTTGGCTTAAATGGAGGAAGAATGGAGGGCATTAGTGAAAAATGG
GACATGGGAAAACGAAGACTCAGGGAGGTTACCCGCAGGGCGGAAGGCGA
CTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGTAGCACG
GCACGCTACAAAGCGCGACTGTTGGCTTAA
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