mRNA_H-paniculata_contig20588.5338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 102 bits (253), Expect = 5.220e-25 Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEI 336
+P++ EAL P+A+KW+ AMEEE L +N TW D P GRK + KW+FKRKL +DG RYKARL+A G++ VEG D+ ET +PV + ++RT+ E D+++
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQV 138
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q6L4Z3_ORYSJ (Putative ubiquitin carrier protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6L4Z3_ORYSJ) HSP 1 Score: 108 bits (271), Expect = 5.720e-25 Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KLK DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L A H + M+ +T L
Sbjct: 667 PKSISEAYTSPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLKPDGTIEKYKARLIAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTSFL 784
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: G4TTI1_SERID (Related to retrotransposon HobS hobase (N-terminal) (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TTI1_SERID) HSP 1 Score: 102 bits (254), Expect = 1.850e-24 Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 1
Query: 1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETD---ILVTVYVDDLVIA 399
EP + EAL P+ DK+ A EE RA ++NGTW+ RLP G+KA ++W+FK K DGS ++YK R++A G++ EG D+ ET P AR LRT+ L A D+E++ E D I+V V++DDL++A
Sbjct: 3 EPTTLGEALKRPDGDKYVQAATEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFTPTARFGALRTIIALAALEDWELDVFIYECDNVKIIVPVHIDDLLLA 135
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q2R3I3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R3I3_ORYSJ) HSP 1 Score: 106 bits (265), Expect = 3.760e-24 Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEH-------DFEIEGMNGETDILVTVYVDD 387
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF T +PVAR++T+R + +L A H D + +NGE D + +Y D
Sbjct: 791 PKSISEAYASPDADYWKEAVRNEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTRKEGEDFFNTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMYQPD 922
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL) HSP 1 Score: 105 bits (263), Expect = 4.980e-24 Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L A H + M+ +T L
Sbjct: 184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 301
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q5W6N4_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5W6N4_ORYSJ) HSP 1 Score: 106 bits (264), Expect = 5.040e-24 Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L A H + M+ +T L
Sbjct: 535 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 652
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q7XRW0_ORYSJ (OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XRW0_ORYSJ) HSP 1 Score: 106 bits (264), Expect = 5.120e-24 Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E ++V NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L A H + M+ +T L
Sbjct: 672 PKSISEAYASPDADYWKEAVRSEMDSIVANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 789
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: Q2QMW4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QMW4_ORYSJ) HSP 1 Score: 106 bits (264), Expect = 5.210e-24 Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L A H + M+ +T L
Sbjct: 1276 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 1393
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: UPI001930B141 (hypothetical protein n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001930B141) HSP 1 Score: 103 bits (256), Expect = 5.460e-24 Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 1 EPKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
EP++ EA++ PEA W+ A+ E +++ N TWE + LP G K KWIFKRK+K DGS +YKARL+A GF EGED+F+T +PV R++++R + + A H+ EI M+ +T L
Sbjct: 186 EPQNFKEAMSTPEAPFWKEAINSEIESIMHNHTWELVN---LPQGSKPLGCKWIFKRKMKADGSIDKYKARLVAKGFKQREGEDYFDTYSPVTRITSVRMLIAIAAVHNLEIHQMDVKTAFL 304
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Match: I1PI69_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PI69_ORYGL) HSP 1 Score: 103 bits (257), Expect = 5.560e-24 Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 4 PKSAAEALNVPEADKWRAAMEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKARLLA*GFSLVEGEDFFETSAPVARMSTLRTVFTLVAEHDFEIEGMNGETDIL 366
PKS +EA P+AD W+ A+ E +++ NGTWE + P G K KW+FK+KL+ DG+ +YKARL+A G++ EGEDFF+T +PVAR++T+R + +L H + M+ +T L
Sbjct: 184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQNEGEDFFDTYSPVARLTTVRVLLSLATSHGLLVHQMDVKTAFL 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20588.5338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20588.5338.1 >prot_H-paniculata_contig20588.5338.1 ID=prot_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp MEEEWRALVKNGTWENEDSGRLPAGRKATRTKWIFKRKLKEDGSTARYKAback to top mRNA from alignment at H-paniculata_contig20588:160..794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20588.5338.1 ID=mRNA_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=635bp|location=Sequence derived from alignment at H-paniculata_contig20588:160..794- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20588:160..794- >mRNA_H-paniculata_contig20588.5338.1 ID=mRNA_H-paniculata_contig20588.5338.1|Name=mRNA_H-paniculata_contig20588.5338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig20588:160..794- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |