mRNA_H-paniculata_contig20581.5337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20581.5337.1
Unique NamemRNA_H-paniculata_contig20581.5337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20581.5337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20581contigH-paniculata_contig20581:2937..3787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size851
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929536.3001788-CDS-H-paniculata_contig20581:2936..37851622929536.3001788-CDS-H-paniculata_contig20581:2936..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20581 2937..3785 +
1691480903.3061564-CDS-H-paniculata_contig20581:2936..37851691480903.3061564-CDS-H-paniculata_contig20581:2936..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20581 2937..3785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20581.5337.1prot_H-paniculata_contig20581.5337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20581 2937..3785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20581.5337.1

>prot_H-paniculata_contig20581.5337.1 ID=prot_H-paniculata_contig20581.5337.1|Name=mRNA_H-paniculata_contig20581.5337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
STESLLFGPSLRTSQPAICPTDALRRLALPPSHLRPSSDEGLRLHQHRDH
CHQQAGEGGAGQPPQGHDIEFPRYQHYDYLHHNGVAGVGPSADGAAGGAA
RSGEHSWVHYLNPGAREKYDGSAGGYGGDVGRGGGEDGNDGVVDVGLNMR
RGRSNGFYPDNHGRRGGSPPDLGFREGSGDSRNLARSRQPPQIGRDSRRL
RSRPRPRPRPNNQENEYIGLGGGVGPETGRRDRVSSYSGAGGAGDVGGRW
RGARGDSEGTPYFVNDKVNSIFSARTEKMLHRR
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mRNA from alignment at H-paniculata_contig20581:2937..3787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20581.5337.1 ID=mRNA_H-paniculata_contig20581.5337.1|Name=mRNA_H-paniculata_contig20581.5337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=851bp|location=Sequence derived from alignment at H-paniculata_contig20581:2937..3787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACGGAGAGTCTCCTGTTTGGACCATCGCTGCGAACAAGTCAGCCAGC
CATCTGCCCGACAGATGCCCTGAGACGACTGGCATTGCCGCCCTCTCACC
TCCGCCCTTCGAGCGACGAAGGCCTTAGGCTGCACCAGCACAGGGACCAC
TGCCATCAGCAGGCGGGAGAAGGGGGGGCTGGGCAGCCTCCCCAAGGGCA
TGATATCGAGTTCCCTCGTTACCAACATTATGACTACTTGCATCACAACG
GCGTCGCGGGCGTCGGACCTAGTGCTGATGGTGCGGCTGGTGGTGCTGCG
CGGAGCGGAGAGCATTCTTGGGTCCACTATTTAAATCCCGGCGCTCGCGA
AAAGTATGATGGAAGTGCTGGTGGTTACGGTGGTGATGTTGGTCGTGGTG
GTGGAGAGGATGGCAACGACGGTGTTGTGGACGTTGGACTCAACATGAGA
CGTGGTCGTTCCAACGGGTTCTACCCGGACAACCATGGGAGGCGGGGTGG
CTCGCCTCCCGACCTCGGTTTCCGGGAGGGATCGGGGGACTCTCGAAATT
TGGCACGTTCACGTCAGCCGCCGCAAATCGGACGTGACAGCCGCCGCCTC
CGCTCCCGCCCCCGCCCGCGCCCGCGCCCGAACAATCAGGAAAACGAATA
CATTGGGCTTGGTGGTGGAGTTGGGCCGGAAACTGGCAGGAGGGATAGGG
TTTCGTCGTACTCTGGAGCGGGCGGAGCTGGAGATGTCGGCGGTAGATGG
CGCGGAGCGCGTGGGGATAGTGAAGGGACGCCATATTTTGTAAACGACAA
AGTGAACTCTATCTTTTCGGCTAGAACCGAGAAGATGTTGCACCGCAGGG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig20581:2937..3787+

>mRNA_H-paniculata_contig20581.5337.1 ID=mRNA_H-paniculata_contig20581.5337.1|Name=mRNA_H-paniculata_contig20581.5337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at H-paniculata_contig20581:2937..3787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACGGAGAGTCTCCTGTTTGGACCATCGCTGCGAACAAGTCAGCCAGC
CATCTGCCCGACAGATGCCCTGAGACGACTGGCATTGCCGCCCTCTCACC
TCCGCCCTTCGAGCGACGAAGGCCTTAGGCTGCACCAGCACAGGGACCAC
TGCCATCAGCAGGCGGGAGAAGGGGGGGCTGGGCAGCCTCCCCAAGGGCA
TGATATCGAGTTCCCTCGTTACCAACATTATGACTACTTGCATCACAACG
GCGTCGCGGGCGTCGGACCTAGTGCTGATGGTGCGGCTGGTGGTGCTGCG
CGGAGCGGAGAGCATTCTTGGGTCCACTATTTAAATCCCGGCGCTCGCGA
AAAGTATGATGGAAGTGCTGGTGGTTACGGTGGTGATGTTGGTCGTGGTG
GTGGAGAGGATGGCAACGACGGTGTTGTGGACGTTGGACTCAACATGAGA
CGTGGTCGTTCCAACGGGTTCTACCCGGACAACCATGGGAGGCGGGGTGG
CTCGCCTCCCGACCTCGGTTTCCGGGAGGGATCGGGGGACTCTCGAAATT
TGGCACGTTCACGTCAGCCGCCGCAAATCGGACGTGACAGCCGCCGCCTC
CGCTCCCGCCCCCGCCCGCGCCCGCGCCCGAACAATCAGGAAAACGAATA
CATTGGGCTTGGTGGTGGAGTTGGGCCGGAAACTGGCAGGAGGGATAGGG
TTTCGTCGTACTCTGGAGCGGGCGGAGCTGGAGATGTCGGCGGTAGATGG
CGCGGAGCGCGTGGGGATAGTGAAGGGACGCCATATTTTGTAAACGACAA
AGTGAACTCTATCTTTTCGGCTAGAACCGAGAAGATGTTGCACCGCAGGA
GCACGGAGAGTCTCCTGTTTGGACCATCGCTGCGAACAAGTCAGCCAGCC
ATCTGCCCGACAGATGCCCTGAGACGACTGGCATTGCCGCCCTCTCACCT
CCGCCCTTCGAGCGACGAAGGCCTTAGGCTGCACCAGCACAGGGACCACT
GCCATCAGCAGGCGGGAGAAGGGGGGGCTGGGCAGCCTCCCCAAGGGCAT
GATATCGAGTTCCCTCGTTACCAACATTATGACTACTTGCATCACAACGG
CGTCGCGGGCGTCGGACCTAGTGCTGATGGTGCGGCTGGTGGTGCTGCGC
GGAGCGGAGAGCATTCTTGGGTCCACTATTTAAATCCCGGCGCTCGCGAA
AAGTATGATGGAAGTGCTGGTGGTTACGGTGGTGATGTTGGTCGTGGTGG
TGGAGAGGATGGCAACGACGGTGTTGTGGACGTTGGACTCAACATGAGAC
GTGGTCGTTCCAACGGGTTCTACCCGGACAACCATGGGAGGCGGGGTGGC
TCGCCTCCCGACCTCGGTTTCCGGGAGGGATCGGGGGACTCTCGAAATTT
GGCACGTTCACGTCAGCCGCCGCAAATCGGACGTGACAGCCGCCGCCTCC
GCTCCCGCCCCCGCCCGCGCCCGCGCCCGAACAATCAGGAAAACGAATAC
ATTGGGCTTGGTGGTGGAGTTGGGCCGGAAACTGGCAGGAGGGATAGGGT
TTCGTCGTACTCTGGAGCGGGCGGAGCTGGAGATGTCGGCGGTAGATGGC
GCGGAGCGCGTGGGGATAGTGAAGGGACGCCATATTTTGTAAACGACAAA
GTGAACTCTATCTTTTCGGCTAGAACCGAGAAGATGTTGCACCGCAGG
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