mRNA_H-paniculata_contig2057.5335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2057.5335.1 vs. uniprot
Match: A0A6H5KF78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF78_9PHAE) HSP 1 Score: 313 bits (801), Expect = 1.970e-82 Identity = 266/590 (45.08%), Postives = 340/590 (57.63%), Query Frame = 1
Query: 1798 LVAQQQIMTTPVRPVVMGVGSPLIMVTPSTSEKAGIRLHDQARETRERLERRRREGS--SPAVSADGLSPFTPRRWSNPNRGN-------PSVAGMERVERLYRDATERDIKLEMARREEDENPRNCTFTPKITTRASSRGRSEKRAQQDAGIGSEGAKAS--------------SSMSRFHALYLDAKRRRAKMEALTDARIVEVAGPGTPVITDLGHKHSTEPLDTRLRENGERWARRWKELEEKKVEQDVEGCTFKPSFSVGRSASAPRLGGRSSSGNGSGSSDSLND----EPFVVRAQRYLAAKEERLSELKREMEKKELAEATFQPKVSASFAAEANGASPEHGDGHARTKGRGGDSRDSGVFERLLRAAVEQEKHKAALKEEFLQKERAEFHDFQPRLRPRRSESPARPLDARLRESTEHWVQSREAREQQRLQQLADQCTFRPSVGTGSDGGRPRRSSSAGPRSRSSAAGRSGGIXXXXXXXXXXXXXXXXXXXXXXXVAAGASGGCRRSTGGFG------FEARSKAFQDAKEQRLNRLREEKVRHELKEATFTPIIGFGS-----------GGSLRKRDA 3435
V ++ TP R V + ++P+ +E +G RLH+QARE RERLERRR+E +P GL+ F+PRRWS P RG P V+G +R+E LYRDA ER+ +LE+ARR E+E PR CTFTP+I S RGRS R G G E S F ALY DAKRR+AKMEAL A EV +PVIT +G + + P+D R++E+ ERW RR++ELEEKK E++ EGCTF P+FS+GRS+SAPR+ R S+G E FV R+ +L A+E + +LK E E++E A ATF+P + P G A D VFERLLRAA QE +KAALKEEFL+KER +++DF+PRL R+ ++P PLDAR+R STE WV+++ REQ+RL+ A+ CTFRPS+G G G XXXXXXXXXXXXXXXXXXXXXXX + RR++GG G F AR AFQDAK+QRL LR+EK + EL+EATF P+IG + GGS R DA
Sbjct: 706 FVMSSPLLFTPTRGVAL-------TLSPALAEASGNRLHEQAREARERLERRRKEVPVVTPLAPMPGLTSFSPRRWSAP-RGPAGGAGAAPVVSGPDRLEGLYRDAIERNSRLELARRAEEERPRECTFTPEI----SKRGRSLVRGYSSDGGGGEXXXXXXXXXXXXXXXXXXXSLFDTFDALYQDAKRRQAKMEALKGAH-EEVGRRTSPVITAMGRQATGVPIDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNGXXXXXXXXXXXXXXIEAFVARSAIFLEARERNMKKLKEEAEERERALATFKPSIL-----------PWGGRSAADDASAAAD-----VFERLLRAAENQEMNKAALKEEFLKKEREQYNDFEPRLPTRQKDAPMEPLDARIRRSTEEWVKNKALREQRRLELEAEHCTFRPSLGGG------------GIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRQRASRRASGGVGPAAAAAFAAREAAFQDAKKQRLEALRKEKEQLELQEATFQPVIGAEARRAGDRGGDPVGGSSRGTDA 1254
BLAST of mRNA_H-paniculata_contig2057.5335.1 vs. uniprot
Match: D8LNB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB8_ECTSI) HSP 1 Score: 281 bits (720), Expect = 8.770e-73 Identity = 247/583 (42.37%), Postives = 324/583 (55.57%), Query Frame = 1
Query: 1798 LVAQQQIMTTPVRPVVMGVGSPLIMVTPSTSEKAGIRLHDQARETRERLERRRREGS--SPAVSADGLSPFTPRRWSNPNRGN-------PSVAGMERVERLYRDATERDIKLEMARREEDENPRNCTFTPKITTRASSRGRSEKRAQQDAGIGSEGAKASSS----------------------MSRFHALYLDAKRRRAKMEALTDARIVEVAGPGTPVITDLGHKHSTEPLDTRLRENGERWARRWKELEEKKVEQDVEGCTFKPSFSVGRSASAPRLGGRSSSGNGSGSSDSLNDEPFVVRAQRYLAAKEERLSELKREMEKKELAEATFQPKVSASFAAEANGASPEHGDGHARTKGRGGDSRDSGVFERLLRAAVEQEKHKAALKEEFLQKERAEFHDFQPRLRPRRSESPARPLDARLRESTEHWVQSREAREQQRLQQLADQCTFRPSVGTGSDGGRPRRSSSAGPRSRSSAAGRSGGIXXXXXXXXXXXXXXXXXXXXXXXVAAGASGGCRRSTGGFG------FEARSKAFQDAKEQRLNRLREEKVRHELKEATFTPIIGF------GSGGS 3417
V ++ TP R V + ++P+++E +G RLH+QARE E +P G + F+PRRWS P RG P V+G++R+E LYRDA ER+ +LE+ARR E+E PR CTFTP+I S RGRS R G F ALY DAKRR+AKMEAL EV +PVIT +G + + P+D R++E+ ERW RR++ELEEKK E++ EGCTF P+FS+GRS+SAPR+ R S+ E FV R+ +L +E + +LK+E E++E A ATF+P + P G A D VFERLLRAA QE +KAALKEEFL+KER + +DF+PRL R+ ++P PLDAR+R+STE WV+++ REQ+RL+ A+ CTFRPS+G G XXXXXXXXXXXXXXXXXXXXXXX ++ RR++GG G F AR AFQDAK+QRL LR+EK + E++EATF P+IG G GGS
Sbjct: 696 FVMSSPLLFTPTRGVA-------VTLSPASAEASGNRLHEQAREAXXXXXXXXXEVPVVTPLAPMPGFTSFSPRRWSAP-RGPAGGAGAAPVVSGLDRLEGLYRDAIERNSRLELARRAEEEKPRECTFTPEI----SKRGRSLVRGYSGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFDTFDALYQDAKRRQAKMEALKAHE--EVGTRTSPVITAMGRQATGVPVDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNXXXXXXXXXXGIEAFVARSAIFLETRERNMEKLKQEAEERERALATFKPSIL-----------PWGGGSAADDASSAAD-----VFERLLRAAENQEMNKAALKEEFLKKEREQNNDFEPRLPTRQKDAPLEPLDARIRKSTEEWVKNKALREQRRLELEAEHCTFRPSLGGGXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTRQRASRRASGGVGPAAATAFAAREAAFQDAKKQRLEALRKEKEQLEVQEATFQPVIGAEARRASGRGGS 1236 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2057.5335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2057.5335.1 >prot_H-paniculata_contig2057.5335.1 ID=prot_H-paniculata_contig2057.5335.1|Name=mRNA_H-paniculata_contig2057.5335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1503bp MEQSTAEEKIASIKQQFDSIDSFPDDAPAGNGSSNGASNGSENDGASSSKback to top mRNA from alignment at H-paniculata_contig2057:1530..19991+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2057.5335.1 ID=mRNA_H-paniculata_contig2057.5335.1|Name=mRNA_H-paniculata_contig2057.5335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=18462bp|location=Sequence derived from alignment at H-paniculata_contig2057:1530..19991+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2057:1530..19991+ >mRNA_H-paniculata_contig2057.5335.1 ID=mRNA_H-paniculata_contig2057.5335.1|Name=mRNA_H-paniculata_contig2057.5335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9018bp|location=Sequence derived from alignment at H-paniculata_contig2057:1530..19991+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |