mRNA_H-paniculata_contig20564.5333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20564.5333.1
Unique NamemRNA_H-paniculata_contig20564.5333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20564.5333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20564contigH-paniculata_contig20564:489..1105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20564.5333.1prot_H-paniculata_contig20564.5333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20564 507..1105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.909101-UTR-H-paniculata_contig20564:488..5061622929535.909101-UTR-H-paniculata_contig20564:488..506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20564 489..506 -
1691480903.1408322-UTR-H-paniculata_contig20564:488..5061691480903.1408322-UTR-H-paniculata_contig20564:488..506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20564 489..506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.9203649-CDS-H-paniculata_contig20564:506..6871622929535.9203649-CDS-H-paniculata_contig20564:506..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20564 507..687 -
1691480903.1499727-CDS-H-paniculata_contig20564:506..6871691480903.1499727-CDS-H-paniculata_contig20564:506..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20564 507..687 -
1622929535.933014-CDS-H-paniculata_contig20564:1016..11051622929535.933014-CDS-H-paniculata_contig20564:1016..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20564 1017..1105 -
1691480903.1579175-CDS-H-paniculata_contig20564:1016..11051691480903.1579175-CDS-H-paniculata_contig20564:1016..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20564 1017..1105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20564.5333.1

>prot_H-paniculata_contig20564.5333.1 ID=prot_H-paniculata_contig20564.5333.1|Name=mRNA_H-paniculata_contig20564.5333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
AFNAGAVVSQQRPPKGTYITENAAEFLIRRFTDAGDVVLSSSADRDSDLS
WKVLKEGRTLVALVPELSRLQPVTDDLAAACRENTRTGL*
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mRNA from alignment at H-paniculata_contig20564:489..1105-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20564.5333.1 ID=mRNA_H-paniculata_contig20564.5333.1|Name=mRNA_H-paniculata_contig20564.5333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig20564:489..1105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTCAACGCAGGGGCTGTGGTATCCCAGCAGCGCCCACCGAAGGGAAC
GTATATCACCGAAAACGCGGCAGAGTTTCTGATCCGACGGTAAGGATAAG
ATGGGGGTCGTTCTTTTGGCTATTCTTGGTGTTTGCCTTTAGACTAAGTT
TGCTGTGTTTAGGGCCGTCATGCCGTTGCTGTGTGTTCGCCCGTTGCATT
TTTCTATAGCACCGTTGAATTCGATAGCAAGGTAGTTGTTGTATTCAACA
TGCTACTCCGCGCAGTTCAGTTCATCAAACTGAAAATACCGCGCCCCCGC
CACTGCAAAATCGATCGCATCAGTGATTTGATATGTGATGTATTCTACTA
CCTCTATTCGTTATACTCGTTTTTTAACAGAGGTGTTCATCATTCCCACT
TCCCTCGATTTGTACCAGATTTACGGATGCGGGTGATGTGGTCCTATCTT
CTTCCGCTGATCGAGACAGCGACCTCTCGTGGAAGGTGCTTAAGGAGGGT
CGGACCCTTGTCGCACTCGTGCCCGAACTTTCGAGGCTCCAACCTGTAAC
TGATGACTTGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTAGT
CGAAGATGCTATCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20564:489..1105-

>mRNA_H-paniculata_contig20564.5333.1 ID=mRNA_H-paniculata_contig20564.5333.1|Name=mRNA_H-paniculata_contig20564.5333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig20564:489..1105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTCAACGCAGGGGCTGTGGTATCCCAGCAGCGCCCACCGAAGGGAAC
GTATATCACCGAAAACGCGGCAGAGTTTCTGATCCGACGGCCTTCAACGC
AGGGGCTGTGGTATCCCAGCAGCGCCCACCGAAGGGAACGTATATCACCG
AAAACGCGGCAGAGTTTCTGATCCGACGATTTACGGATGCGGGTGATGTG
GTCCTATCTTCTTCCGCTGATCGAGACAGCGACCTCTCGTGGAAGGTGCT
TAAGGAGGGTCGGACCCTTGTCGCACTCGTGCCCGAACTTTCGAGGCTCC
AACCTGTAACTGATGACTTGGCTGCTGCCTGCCGCGAGAACACCCGGACA
GGGCTGTAGATTTACGGATGCGGGTGATGTGGTCCTATCTTCTTCCGCTG
ATCGAGACAGCGACCTCTCGTGGAAGGTGCTTAAGGAGGGTCGGACCCTT
GTCGCACTCGTGCCCGAACTTTCGAGGCTCCAACCTGTAACTGATGACTT
GGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTAG
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