mRNA_H-paniculata_contig20561.5332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig20561.5332.1
Unique Name	mRNA_H-paniculata_contig20561.5332.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.160e-23
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:   14 YARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 126

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.500e-22
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+  F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:   54 YARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 166

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.060e-22
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:   91 YARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 203

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-21
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:  226 YARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRLTSDQSTPMIWRWSVHA 338

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-21
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+  ++ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:   52 YARPGHVSFDEGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 164

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.120e-21
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHV+FD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:  172 YARPGHVAFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 284

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.060e-21
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:  280 YARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 392

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.220e-21
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDAAEGALN-------PRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:  212 YARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENTRTRSTSDQPTPTLWGWSVDA 324

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5JU10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU10_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.510e-21
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = -2

Query:   94 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+   G  +   +S K V  ER+ +++SV  QVAISR +  Y+LALRGRQDA
Sbjct:   30 YARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDGGTMSLKGVFKERLPRIVSVATQVAISRRVQRYKLALRGRQDA 119

[Close]

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.130e-21
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = -2

Query:   46 YARRGHVSFDQRCFEPSPLAVESFGRLGMCGEELLEEVASSVVGEEEDDEVSQKRVLLERMKQVISVTKQVAISRWMHGYRLALRGRQDA-------AEGALNPRAW*WSLAA 363
            YAR GHVSFD+R F+ + LAVESFGRLG  G E ++E+A+  VG  +   ++ K V  ER+ Q++SV  QVAISR +  Y+LALRGRQDA             P  W WS+ A
Sbjct:  319 YARPGHVSFDERSFKLTSLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 431

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig20561.5332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2J3_9PHAE	2.160e-23	48.67	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JL29_9PHAE	2.500e-22	47.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	3.060e-22	48.67	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	1.710e-21	48.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	1.900e-21	46.90	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKF1_9PHAE	2.120e-21	47.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	3.060e-21	48.67	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	3.220e-21	48.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU10_9PHAE	3.510e-21	54.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEF8_9PHAE	4.130e-21	48.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig20561	contig	H-paniculata_contig20561:4129..4492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	364
Cds size	333
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929535.8366292-UTR-H-paniculata_contig20561:4128..4159	1622929535.8366292-UTR-H-paniculata_contig20561:4128..4159	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig20561 4129..4159 +
1691480903.124908-UTR-H-paniculata_contig20561:4128..4159	1691480903.124908-UTR-H-paniculata_contig20561:4128..4159	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig20561 4129..4159 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929535.8546147-CDS-H-paniculata_contig20561:4159..4492	1622929535.8546147-CDS-H-paniculata_contig20561:4159..4492	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig20561 4160..4492 +
1691480903.133256-CDS-H-paniculata_contig20561:4159..4492	1691480903.133256-CDS-H-paniculata_contig20561:4159..4492	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig20561 4160..4492 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig20561.5332.1	prot_H-paniculata_contig20561.5332.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig20561 4160..4492 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig20561:4129..4492+
coding sequence from alignment at H-paniculata_contig20561:4129..4492+

protein sequence of mRNA_H-paniculata_contig20561.5332.1

>prot_H-paniculata_contig20561.5332.1 ID=prot_H-paniculata_contig20561.5332.1|Name=mRNA_H-paniculata_contig20561.5332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MEHYGAAKLHHHARGLRAPSAASCLPRRASLYPCIHLEIATCLVTEMTCF
IRSSSTLFCETSSSSSSPTTLDATSSSSSSPHIPRRPKLSTARGLGSKQR
WSKDTCPLRA*

mRNA from alignment at H-paniculata_contig20561:4129..4492+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig20561.5332.1 ID=mRNA_H-paniculata_contig20561.5332.1|Name=mRNA_H-paniculata_contig20561.5332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=364bp|location=Sequence derived from alignment at H-paniculata_contig20561:4129..4492+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAATCGAAAAATGATAAAACACCGTGATGGAGCACTACGGCGCCG
CTAAACTCCATCACCACGCTCGAGGATTGAGGGCTCCTTCTGCTGCATCT
TGTCTTCCCCGCAGAGCCAGTCTATATCCGTGCATCCATCTCGAGATAGC
CACCTGTTTAGTCACCGAAATGACCTGTTTCATCCGTTCCAGCAGTACTC
TTTTCTGCGAAACCTCGTCGTCCTCCTCTTCCCCCACCACGCTGGATGCC
ACCTCCTCAAGCAGCTCCTCTCCGCACATTCCCAGACGCCCAAAGCTCTC
CACCGCGAGGGGGCTAGGTTCGAAACAACGCTGGTCGAAGGACACGTGTC
CTCTTCGAGCGTAG

Coding sequence (CDS) from alignment at H-paniculata_contig20561:4129..4492+

>mRNA_H-paniculata_contig20561.5332.1 ID=mRNA_H-paniculata_contig20561.5332.1|Name=mRNA_H-paniculata_contig20561.5332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig20561:4129..4492+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCACTACGGCGCCGCTAAACTCCATCACCACGCTCGAGGATTGAG
GGCTCCTTCTGCTGCATCTTGTCTTCCCCGCAGAGCCAGTCTATATCCGT
GCATCCATCTCGAGATAGCCACCTGTTTAGTCACCGAAATGACCTGTTTC
ATCCGTTCCAGCAGTACTCTTTTCTGCGAAACCTCGTCGTCCTCCTCTTC
CCCCACCACGCTGGATGCCACCTCCTCAAGCAGCTCCTCTCCGCACATTC
CCAGACGCCCAAAGCTCTCCACCGCGAGGGGGCTAGGTTCGAAACAACGC
TGGTCGAAGGACACGTGTCCTCTTCGAGCGTAGATGGAGCACTACGGCGC
CGCTAAACTCCATCACCACGCTCGAGGATTGAGGGCTCCTTCTGCTGCAT
CTTGTCTTCCCCGCAGAGCCAGTCTATATCCGTGCATCCATCTCGAGATA
GCCACCTGTTTAGTCACCGAAATGACCTGTTTCATCCGTTCCAGCAGTAC
TCTTTTCTGCGAAACCTCGTCGTCCTCCTCTTCCCCCACCACGCTGGATG
CCACCTCCTCAAGCAGCTCCTCTCCGCACATTCCCAGACGCCCAAAGCTC
TCCACCGCGAGGGGGCTAGGTTCGAAACAACGCTGGTCGAAGGACACGTG
TCCTCTTCGAGCGTAG