mRNA_H-paniculata_contig20553.5329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20553.5329.1
Unique NamemRNA_H-paniculata_contig20553.5329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20553.5329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20553contigH-paniculata_contig20553:1362..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.4418755-CDS-H-paniculata_contig20553:1361..16671622929535.4418755-CDS-H-paniculata_contig20553:1361..1667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20553 1362..1667 +
1691480903.0085738-CDS-H-paniculata_contig20553:1361..16671691480903.0085738-CDS-H-paniculata_contig20553:1361..1667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20553 1362..1667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.488657-UTR-H-paniculata_contig20553:1667..17321622929535.488657-UTR-H-paniculata_contig20553:1667..1732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20553 1668..1732 +
1691480903.0175333-UTR-H-paniculata_contig20553:1667..17321691480903.0175333-UTR-H-paniculata_contig20553:1667..1732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20553 1668..1732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20553.5329.1prot_H-paniculata_contig20553.5329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20553 1362..1667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20553.5329.1

>prot_H-paniculata_contig20553.5329.1 ID=prot_H-paniculata_contig20553.5329.1|Name=mRNA_H-paniculata_contig20553.5329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
PALSDDQLRFVDDGLALASRVADDPLPPPLPRPLPPPRPGFVPGQAPAPP
ARVDDDELLNALVPRRPRPPPRPPPPPPRPRPPPRLPWPLSIVGCLGTGL
D*
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mRNA from alignment at H-paniculata_contig20553:1362..1732+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20553.5329.1 ID=mRNA_H-paniculata_contig20553.5329.1|Name=mRNA_H-paniculata_contig20553.5329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=371bp|location=Sequence derived from alignment at H-paniculata_contig20553:1362..1732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCACTGTCCGACGACCAGCTACGCTTTGTCGACGATGGTTTGGCGTT
AGCATCGCGGGTTGCTGATGATCCCCTACCTCCTCCCCTCCCGCGGCCTC
TACCTCCTCCCCGTCCAGGCTTCGTGCCCGGCCAGGCGCCAGCACCGCCA
GCACGGGTGGACGATGATGAGCTACTGAACGCGCTGGTTCCCCGGCGTCC
TCGGCCACCTCCACGGCCTCCACCACCACCGCCACGACCTCGGCCTCCAC
CACGGCTCCCTTGGCCACTTTCCATTGTTGGATGTTTGGGCACGGGGTTG
GATTGATGTGGTGTTGCGGCCGCGCTCTTGGGTCTTGAACTTTGTCGGGC
AGACGACTGGTGCGATCTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20553:1362..1732+

>mRNA_H-paniculata_contig20553.5329.1 ID=mRNA_H-paniculata_contig20553.5329.1|Name=mRNA_H-paniculata_contig20553.5329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig20553:1362..1732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCACTGTCCGACGACCAGCTACGCTTTGTCGACGATGGTTTGGCGTT
AGCATCGCGGGTTGCTGATGATCCCCTACCTCCTCCCCTCCCGCGGCCTC
TACCTCCTCCCCGTCCAGGCTTCGTGCCCGGCCAGGCGCCAGCACCGCCA
GCACGGGTGGACGATGATGAGCTACTGAACGCGCTGGTTCCCCGGCGTCC
TCGGCCACCTCCACGGCCTCCACCACCACCGCCACGACCTCGGCCTCCAC
CACGGCTCCCTTGGCCACTTTCCATTGTTGGATGTTTGGGCACGGGGTTG
GATTGACCCGCACTGTCCGACGACCAGCTACGCTTTGTCGACGATGGTTT
GGCGTTAGCATCGCGGGTTGCTGATGATCCCCTACCTCCTCCCCTCCCGC
GGCCTCTACCTCCTCCCCGTCCAGGCTTCGTGCCCGGCCAGGCGCCAGCA
CCGCCAGCACGGGTGGACGATGATGAGCTACTGAACGCGCTGGTTCCCCG
GCGTCCTCGGCCACCTCCACGGCCTCCACCACCACCGCCACGACCTCGGC
CTCCACCACGGCTCCCTTGGCCACTTTCCATTGTTGGATGTTTGGGCACG
GGGTTGGATTGA
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