mRNA_H-paniculata_contig20548.5327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20548.5327.1
Unique NamemRNA_H-paniculata_contig20548.5327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 3.620e-88
Identity = 178/219 (81.28%), Postives = 188/219 (85.84%), Query Frame = 1
Query:    1 REEDRLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAA-------GDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEEXXXXXXXXXXXXXXXXXXXXXRALATAIRDKSAIIKKE 633
            +EEDR+SIEKLA+SAGVELHLMSNETEEG QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARD RDRAPTIP SV+AKRA          G  M+V+G          RKTEKDLMWENGGPGVYSCDYRKYYDLKDD WKMDRIPEIMDGKNVAD+VD+DID KLALLEQ  XXXXXXXXXXXXXXXXXXXXXRALA AIRD+S +IKKE
Sbjct:  300 KEEDRVSIEKLADSAGVELHLMSNETEEGVQEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAAXXXXXXXXXGSSMDVDGGEGGRSQPTARKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRSKVIKKE 518          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.690e-53
Identity = 110/179 (61.45%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 REEDRLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAA-GDGMNVE----GERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            RE DR +I   A    VEL  MSN +EEG   VKTAACDKLLQARVDAR+AGKKVG +++RLTVAMP  RD R R  +IP SVLA RA A  G G N +               R TEK+ MW NGGPGVY+CDYRKYYDL  D+WK D+IPEIMDGKNVAD+VD +ID +LALLE+EE
Sbjct:  300 REPDRTNILAAAAGVNVELMFMSNVSEEGVMAVKTAACDKLLQARVDARLAGKKVGEVMNRLTVAMPTPRDARARGASIPDSVLAARAAAKNGAGSNAQMSXXXXXXXXXXXXARLTEKERMWLNGGPGVYNCDYRKYYDLASDDWKFDKIPEIMDGKNVADYVDAEIDARLALLEREE 478          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A6V1RDW6_HETAK (Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDW6_HETAK)

HSP 1 Score: 172 bits (437), Expect = 7.360e-47
Identity = 103/210 (49.05%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    7 EDRLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEEXXXXXXXXXXXXXXXXXXXXXRALATAIRDKSAIIKKE 633
            EDR +IEK AE +G EL  MSN +EEG   VK  ACDKLL ARV+ R+ GKKV  +++RLTVA P+ RD R RA  IP SVLA +             R      A+RKTEKDL  ENGG GVYSCD+RKYYDLK + W+ D  P+I+DGKNVAD+VD DI  KL  LE+EE                     + L  A+RDK  I +++
Sbjct:  302 EDREAIEKCAEGSGAELMKMSNVSEEGVSAVKNKACDKLLTARVETRLTGKKVTDVMNRLTVAQPRPRDARARAAFIPESVLAAK------------NRMDTDKPAKRKTEKDLQLENGGAGVYSCDFRKYYDLKSEEWRWDVQPQILDGKNVADYVDPDIAAKLEQLEREEEQLAAEYLNEEDMGSDLDEEEKVLHKAVRDKKKITQQQ 499          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A7S1UHB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.040e-42
Identity = 98/213 (46.01%), Postives = 127/213 (59.62%), Query Frame = 1
Query:    4 EEDRLSIEKLAESAG--VELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYD-LKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEEXXXXXXXXXXXXXXXXXXXXXRALATAIRDKSAIIKK 630
            +E R  IE++  +AG   EL  MS   E+G   V+  ACDKLLQ RVD ++  KKV G+++RLTVA P  RD + R   IP SVLAKR     DGM+      A     ER+TEKD MWENGGPGVY  DYR+++  L+DD W+ D +PEIMDGKNVADF+D DI+ +LA LE EE                       +  AIRD++ ++K+
Sbjct:  308 QEQRDDIEEMVNAAGPNAELMKMSVLAEDGVMTVRNQACDKLLQQRVDQKLNRKKVDGVLNRLTVAKPAPRDNQTRGAVIPASVLAKR-----DGMDT-----AAADAGERRTEKDRMWENGGPGVYKPDYREHWQGLRDDQWRHDAVPEIMDGKNVADFMDPDIEARLAALEAEEVQLLEEDALNPPDESTLDEETLGIHKAIRDRAGLLKQ 510          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A7S3MAG3_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.270e-42
Identity = 91/171 (53.22%), Postives = 111/171 (64.91%), Query Frame = 1
Query:   13 RLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMA-GKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            R  IE++A  AG EL  MSN  E+    +K AACDKLL+ARVD++++ GK    ++SR+TVAMPK RD   R P+IP SV  K +              AV   +ER TEK LMW NGGPGVY CDYRKYY L +D W+ D IPE MDGKNV DF DEDI+ +L  LE+EE
Sbjct:  323 RARIEEVARKAGAELVPMSNVNEDNISYLKVAACDKLLEARVDSKLSMGKIKDDVLSRITVAMPKPRDSATRGPSIPESVANKAS------------AMAVTGASERLTEKQLMWNNGGPGVYVCDYRKYYQLAEDEWRFDTIPEFMDGKNVTDFFDEDIEARLNALEEEE 481          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A7S2W610_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W610_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.730e-40
Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    7 EDRLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            ED+  ++ + +++G  L  MS   E    EVK  ACD LL+ RV+ +    K+ G+++RLTVAMP +RDE++R  TIP SVL  RA  A      EG+        ++KTEKDLMWENGGPGVYSCDYRKYY L+   +  D IPEI+DGKN+ADFVD DI +KL  LE+EE
Sbjct:  302 EDKELLDGMVKNSGAVLMPMSAAAEINIAEVKQRACDLLLEQRVETKTQSNKLNGILNRLTVAMPVSRDEKERPVTIPESVL--RAREAKANKTEEGDVEMDDAEPKKKTEKDLMWENGGPGVYSCDYRKYYKLRKPEYNFDSIPEIIDGKNIADFVDPDIMQKLEELEKEE 471          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A448YYN1_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.770e-40
Identity = 97/228 (42.54%), Postives = 131/228 (57.46%), Query Frame = 1
Query:    7 EDRLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVG----------------TGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEEXXXXXXXXXXXXXXXXXXXXX---RALATAIRDKSAIIKK 630
            E +  IE LA+ A   L  MSN++E G  EVK +AC+KLL +RVDAR++GKK+ G+++RL V  P  RD  +R   IP +V    AE     ++ + +R+  G                 G+ RKT +DLMWENGGPGV++ DYR+ Y+LK+D WK D IPEI+DGKN+AD+VD DI++KLA LE EE                         A   AIRD+  II+K
Sbjct:  255 EKKEMIEALAKDANCSLMTMSNKSEHGVSEVKASACEKLLASRVDARVSGKKIEGVMNRLQVFHPTPRDNVERGAHIPDTVKDAIAEGRIGSVDHKPKRSRSGYAQTKGDTDGGDDDEMNGSYRKTARDLMWENGGPGVWAPDYREQYELKEDEWKFDAIPEIIDGKNIADYVDPDIEKKLADLEMEEEQLLKQLEAERMGEEPESDLDSEEEAAVDAIRDRKKIIRK 482          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A482RSB8_9ARCH (NOG1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSB8_9ARCH)

HSP 1 Score: 151 bits (382), Expect = 3.330e-39
Identity = 86/171 (50.29%), Postives = 110/171 (64.33%), Query Frame = 1
Query:   13 RLSIEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARM-AGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            R  IE  A+ A  EL  MSN +EE   ++KT ACDKLL+ RVD+++ AG+    ++SR++VA PK RD + RAPTIP            D + ++   AA     ++ TEK LMW  GGPGVYSCDYRKYY L++D WK D +PEIMDGKNV D+ D DI+ KL  LE EE
Sbjct:  289 RQRIEDTAKQANAELLPMSNVSEENISKLKTLACDKLLEQRVDSKLSAGRLTNDILSRISVAQPKPRDNKVRAPTIP------------DSLQMDTSMAA-----DKSTEKTLMWAQGGPGVYSCDYRKYYTLENDEWKFDTLPEIMDGKNVLDYYDSDIEEKLNQLEAEE 442          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A7S4MXB5_9STRA (Nucleolar GTP-binding protein 1 n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXB5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 8.790e-38
Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 1
Query:   37 ESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAA------------------GDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            E+ G  L  MSN  E+G  EVK AACDKLL ARV++R++G+KV G+++RL V  P ARD   R   IP SV+  R E                     +G   +GE AA+    ++KT ++LMWENGGPGV+S D+R+ YDL D  WK D IPEI+DGKNVAD+VD DID KL  LE+EE
Sbjct:  266 ETDGCTLMTMSNHNEKGVSEVKNAACDKLLAARVESRVSGRKVEGVMNRLQVFHPTARDSVARDVCIPESVVKARDEGRLGEQKKSRVGYSVTKEDMENGDAPDGEDAAMDDATKKKTARELMWENGGPGVWSPDFREQYDLLDAEWKFDAIPEILDGKNVADYVDPDIDAKLDKLEREE 445          
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Match: A0A1Z5J5Y7_FISSO (Nucleolar GTP-binding protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5Y7_FISSO)

HSP 1 Score: 148 bits (373), Expect = 1.010e-37
Identity = 85/174 (48.85%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   22 IEKLAESAGVELHLMSNETEEG-QEVKTAACDKLLQARVDARMAGKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAA-------GDGMNVEGERAAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMDGKNVADFVDEDIDRKLALLEQEE 519
            +E L + +   L  MSN +E G  EVK AACDKLL++RVD+R+AGKK+ G+++RL V  PK RD   R   +P SVL  ++             +N +     +      K  ++LMWENGGPGV++ DYR  YDLKDD+WK D IPEI+DGKN+ADFVD DI RKL  LE+EE
Sbjct:  307 VEDLVKESNCSLMTMSNISEHGVSEVKMAACDKLLESRVDSRIAGKKIDGVMNRLQVFYPKPRDHVKREAYVPESVLNNKSSVPQRSRVGYAPTVNDDXXXXXMDMHETPKLARELMWENGGPGVWAPDYRDIYDLKDDSWKYDAIPEIIDGKNIADFVDPDILRKLEELEREE 480          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20548.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI3.620e-8881.28Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A836CDN0_9STRA2.690e-5361.45Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
A0A6V1RDW6_HETAK7.360e-4749.05Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigm... [more]
A0A7S1UHB4_9STRA2.040e-4246.01Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3MAG3_9STRA2.270e-4253.22Nucleolar GTP-binding protein 1 n=1 Tax=Spumella e... [more]
A0A7S2W610_9STRA4.730e-4051.16Nucleolar GTP-binding protein 1 n=1 Tax=labyrinthu... [more]
A0A448YYN1_9STRA4.770e-4042.54Nucleolar GTP-binding protein 1 n=1 Tax=Pseudo-nit... [more]
A0A482RSB8_9ARCH3.330e-3950.29NOG1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A7S4MXB5_9STRA8.790e-3849.44Nucleolar GTP-binding protein 1 n=2 Tax=Odontella ... [more]
A0A1Z5J5Y7_FISSO1.010e-3748.85Nucleolar GTP-binding protein 1 n=2 Tax=Fistulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20548contigH-paniculata_contig20548:43..2872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue9.6e-75
Seed eggNOG ortholog2880.D7FIR4
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Exons5
Model size633
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20548.5327.1prot_H-paniculata_contig20548.5327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20548 43..2872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.2475832-CDS-H-paniculata_contig20548:42..1291622929535.2475832-CDS-H-paniculata_contig20548:42..129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 43..129 +
1691480902.9416556-CDS-H-paniculata_contig20548:42..1291691480902.9416556-CDS-H-paniculata_contig20548:42..129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 43..129 +
1622929535.2664719-CDS-H-paniculata_contig20548:313..3851622929535.2664719-CDS-H-paniculata_contig20548:313..385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 314..385 +
1691480902.953824-CDS-H-paniculata_contig20548:313..3851691480902.953824-CDS-H-paniculata_contig20548:313..385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 314..385 +
1622929535.2834835-CDS-H-paniculata_contig20548:1012..12611622929535.2834835-CDS-H-paniculata_contig20548:1012..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 1013..1261 +
1691480902.963713-CDS-H-paniculata_contig20548:1012..12611691480902.963713-CDS-H-paniculata_contig20548:1012..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 1013..1261 +
1622929535.2977486-CDS-H-paniculata_contig20548:1868..19911622929535.2977486-CDS-H-paniculata_contig20548:1868..1991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 1869..1991 +
1691480902.9737997-CDS-H-paniculata_contig20548:1868..19911691480902.9737997-CDS-H-paniculata_contig20548:1868..1991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 1869..1991 +
1622929535.3151364-CDS-H-paniculata_contig20548:2770..28721622929535.3151364-CDS-H-paniculata_contig20548:2770..2872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 2771..2872 +
1691480902.9832172-CDS-H-paniculata_contig20548:2770..28721691480902.9832172-CDS-H-paniculata_contig20548:2770..2872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20548 2771..2872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20548.5327.1

>prot_H-paniculata_contig20548.5327.1 ID=prot_H-paniculata_contig20548.5327.1|Name=mRNA_H-paniculata_contig20548.5327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
REEDRLSIEKLAESAGVELHLMSNETEEGQEVKTAACDKLLQARVDARMA
GKKVGGLVSRLTVAMPKARDERDRAPTIPPSVLAKRAEAAGDGMNVEGER
AAVGTGAERKTEKDLMWENGGPGVYSCDYRKYYDLKDDNWKMDRIPEIMD
GKNVADFVDEDIDRKLALLEQEEDQLQAEAEANQDYESDVDEDERALATA
IRDKSAIIKKE
back to top

mRNA from alignment at H-paniculata_contig20548:43..2872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20548.5327.1 ID=mRNA_H-paniculata_contig20548.5327.1|Name=mRNA_H-paniculata_contig20548.5327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2830bp|location=Sequence derived from alignment at H-paniculata_contig20548:43..2872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGGAGGATCGGCTGTCAATCGAGAAGCTGGCGGAGAGCGCCGGGGT GGAGCTGCACCTCATGAGCAACGAAACCGAAGAGGGCGTACAGGCAAGAT CTTTGTAATATGTTATGGGTCATTGTTCAGTCGTTCACTTTAAGCTACTA TAGATCATTTAAATGTCATGCTCCACGCTCAATGAGCCAAAGGACTACAA AGACCGAAGAGGACATACATGTAATACTCCTAACTCTAACCCGTTCGTTT TTTTTTCTTGTTGACCATGAGCAGGAAGTCAAAACGGCGGCGTGTGACAA GCTGTTGCAGGCCAGGGTAGACGCAAGGATGGCGGGCAAGAAGGTGAACG ATACATGGCTCTTTATTGGTCAGTCGTACTCCGCCTTCTTCACATCATGT GGATCATATTCCAGCAGTGTTGTAAATCTCTAAAAACTGGTAATGGAAAA TGGCATTACTAAGTACTTTACATGGAACTATCAATAGCCAAGTATACAAG AAGGACGTAACATGAAGTCGGCTATTTATGGTAACATGACACGATATAAG TCGAAGTTGGGGTTGTACTTTGGGTAAATCAACCATTTATACCTTGAACT ACTACGCACGGGCAAGAAACTTGTCAAATTTCGAACTTGACGGCTTAGGA TTATTAATGATAAAAAAGCCAGTAAGTCAATAAGCCAAAAAACGTAAGCT CTACTACCTAAAAAAGAAACCCGTAGTAGCAGCAGTGAAGGTATTCGAAT CAAACGTAAAGGCTAAACAAATCAGTTCGCAGACAATTTCGAATTATCGC TTGACCAGATGTGTAATTCATTTGATTCATACGCAACAACAACAAAAATA ACTACAAAATCACTTCTCAAACATATTTTGCAAGTCTCGAACTTGGGAAC ACATGGAAAGGTAGGATAAACATTTTCTCGACTCTGTGCTTTGCTTTGGT TCGTTGTTCATACTCCATAGGTCGGAGGACTGGTCTCCCGATTGACTGTG GCCATGCCCAAGGCTCGTGATGAGCGCGACCGAGCCCCAACCATCCCTCC GTCGGTACTAGCCAAGAGAGCTGAGGCGGCTGGCGATGGCATGAATGTTG AGGGCGAAAGAGCAGCGGTAGGGACGGGAGCCGAGAGGAAAACGGAGAAA GATCTCATGTGGGAGAACGGTGGGCCTGGTGTCTACTCGTGCGATTACCG AAAATACTACGATCTCAAGGTGACACTTTTCGTTTGTATGTGCGTTTGCC ACGCTTGAAGAATTGTCGTACTATATTCAGTAATTTTTTTACGACCCTGA GGGATGTGAAACTTCGTAGTGATTACCCTATTTATTTTTTTTTGGATGAC CTTGAGGTTGCCTTGACGTGGCCTTGAGGTGGAATATGAGTCTACGGTTA CCAAGCAAAAAATAGTCATGCTTGACGGTTCTAGCGCTGGAGGCTGTTTT GTAACGGTGAAGGGGTACGGCTTTTATCCCAGAACAGAGGTGATGGTTTT CACGGCGTTTCGTCACGCGTTCAGTGGTTATCGTCTATTTCGTATGACCG CGAGTCTGAGTTATCGACTGCGGTGCCGAAAATGTACTCTCGAGGAAAAA TTCTGTCAACTTCTCGCAATGGGTTTTTGACATCGCCCAGCAAGCGATTC GAGAATAATCATAATTTGCAAGGTTAGGCGATGATATATACACTGGAGTA TGTAGCTGCTATGAATTGCTGTTACTGTGAGATATCCCGTGCCTGTACTC GTCATCATTTTTATATTGGAATGATAAATGCTCTATGTTTGATGACTACG AGTATTTTCCCGTGTCTTTGTAACAGGACGACAACTGGAAGATGGATCGC ATTCCCGAAATCATGGACGGGAAAAACGTGGCCGACTTCGTGGACGAAGA CATCGACCGAAAGCTCGCACTGCTCGAACAGGAGGAAGACCAACTACAGG TGCGAGGCATTTCACATCAACATCCATTCCTGCAGTTTGCTCATTTTATG TCATCCTCATCAGATAATGAGTCCATGGTAGTTTCGGAGCATGAAGATTT CCTATACTTTGTACAAGGGTCTGCGTGAGAGAATGTTGTCCTCGTTGTAT CTATTCATCTCTTGGTACTGATAGATTAGCCACGGTTTTGAGATTTTTAA GATGGTTGGGGGTTTCCGTGCTCCGTCCTAGATTCATATACGTCCTCTTC ACGTAAACTTTTGTACTTTTAGAGCTCAATTACTTGTTCCTATTTCTTTG GGGCCGTTTTCGACAAGTGTGTGCAATCGAACTCCGCCCTGAGGCAAACA AAAGGTGCCAAGGTAGAACGATATTGAACTTGTGAGTGTATTTTTTTATT TTGAATGTGTTGGTAGTGTGTAGTGTAATGTCATACTCATAGGTTTTATA ATCGTCCGTGTGTGTGTGTGTGTGTGTTTGTATGCGTGTTGTACTGTATT GGTTATACGATGCTGTTATTAAGAGTGGAATATGACCAGAACTGCGCCCC TATCGCTGTACTTTGTCTTCCAAGATTCGTTTTCTGGAAATCACTGGAAT AAAGAATGAAATCATATTCCGGAATGACAGCGATTTTTTTTTTTTTTTTT CCATGTTGGGATGAAGGAAATTTGCTTCGTGTGTGTACCAGTATATATGT GCTCGTGTGTTATCCTCTTTTTTTTTTGCGTAGTTATGTGTTACAATTAT TTGCATGTGGTGTCATGTGATGGTCCAGGCGGAAGCGGAGGCGAATCAGG ATTACGAATCCGACGTTGACGAAGACGAGCGCGCTCTGGCGACGGCTATC CGCGACAAATCCGCCATCATCAAGAAAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20548:43..2872+

>mRNA_H-paniculata_contig20548.5327.1 ID=mRNA_H-paniculata_contig20548.5327.1|Name=mRNA_H-paniculata_contig20548.5327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig20548:43..2872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGGAGGATCGGCTGTCAATCGAGAAGCTGGCGGAGAGCGCCGGGGT
GGAGCTGCACCTCATGAGCAACGAAACCGAAGAGGGCAGGGAGGAGGATC
GGCTGTCAATCGAGAAGCTGGCGGAGAGCGCCGGGGTGGAGCTGCACCTC
ATGAGCAACGAAACCGAAGAGGGCCAGGAAGTCAAAACGGCGGCGTGTGA
CAAGCTGTTGCAGGCCAGGGTAGACGCAAGGATGGCGGGCAAGAAGCAGG
AAGTCAAAACGGCGGCGTGTGACAAGCTGTTGCAGGCCAGGGTAGACGCA
AGGATGGCGGGCAAGAAGGTCGGAGGACTGGTCTCCCGATTGACTGTGGC
CATGCCCAAGGCTCGTGATGAGCGCGACCGAGCCCCAACCATCCCTCCGT
CGGTACTAGCCAAGAGAGCTGAGGCGGCTGGCGATGGCATGAATGTTGAG
GGCGAAAGAGCAGCGGTAGGGACGGGAGCCGAGAGGAAAACGGAGAAAGA
TCTCATGTGGGAGAACGGTGGGCCTGGTGTCTACTCGTGCGATTACCGAA
AATACTACGATCTCAAGGTCGGAGGACTGGTCTCCCGATTGACTGTGGCC
ATGCCCAAGGCTCGTGATGAGCGCGACCGAGCCCCAACCATCCCTCCGTC
GGTACTAGCCAAGAGAGCTGAGGCGGCTGGCGATGGCATGAATGTTGAGG
GCGAAAGAGCAGCGGTAGGGACGGGAGCCGAGAGGAAAACGGAGAAAGAT
CTCATGTGGGAGAACGGTGGGCCTGGTGTCTACTCGTGCGATTACCGAAA
ATACTACGATCTCAAGGACGACAACTGGAAGATGGATCGCATTCCCGAAA
TCATGGACGGGAAAAACGTGGCCGACTTCGTGGACGAAGACATCGACCGA
AAGCTCGCACTGCTCGAACAGGAGGAAGACCAACTACAGGACGACAACTG
GAAGATGGATCGCATTCCCGAAATCATGGACGGGAAAAACGTGGCCGACT
TCGTGGACGAAGACATCGACCGAAAGCTCGCACTGCTCGAACAGGAGGAA
GACCAACTACAGGCGGAAGCGGAGGCGAATCAGGATTACGAATCCGACGT
TGACGAAGACGAGCGCGCTCTGGCGACGGCTATCCGCGACAAATCCGCCA
TCATCAAGAAAGAGGCGGAAGCGGAGGCGAATCAGGATTACGAATCCGAC
GTTGACGAAGACGAGCGCGCTCTGGCGACGGCTATCCGCGACAAATCCGC
CATCATCAAGAAAGAG
back to top