mRNA_H-paniculata_contig20545.5326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20545.5326.1
Unique NamemRNA_H-paniculata_contig20545.5326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: A0A4V6MTD2_9RHOB (Peroxidase n=1 Tax=Paracoccus subflavus TaxID=2528244 RepID=A0A4V6MTD2_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 5.320e-6
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   70 ICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDGEV 255
            I D RND N +++Q+ VA++ LHN+FVD  G  F  ARD T   +Q +VL D LP I   +V
Sbjct:  265 IGDGRNDENLLVAQLHVAFLRLHNRFVD-LGNGFQGARDLTRFHYQWLVLNDFLPTICANDV 325          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: A0A2N4T0L1_9MICC (Uncharacterized protein n=3 Tax=Kocuria TaxID=57493 RepID=A0A2N4T0L1_9MICC)

HSP 1 Score: 50.1 bits (118), Expect = 4.710e-5
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   37 DYRRFRSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDGEV 255
            D  R   G A I D RND N I+ Q+ +A++ LHN+FVD  G +F +AR  T   +Q +++ D LP+++   V
Sbjct:  212 DLPRDAEGRAVIGDHRNDENLIVCQLHLAFLQLHNRFVDS-GASFEEARRLTRWHFQWLIVHDFLPHVVGRSV 283          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: A0A378GZ14_KOCRO (Animal haem peroxidase n=8 Tax=Kocuria TaxID=57493 RepID=A0A378GZ14_KOCRO)

HSP 1 Score: 50.1 bits (118), Expect = 4.710e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   37 DYRRFRSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNIL 243
            D  R   G A I D RND N I++Q  + ++ LHN+FVD EG  F QA+  T   +Q +++ D LP ++
Sbjct:  214 DLPRNADGTAIIGDHRNDENLIVAQFHLTFLQLHNRFVD-EGMTFQQAQQMTRWHYQWLIVHDFLPRMV 281          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: A0A3A4RCN6_9BURK (Peroxidase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3A4RCN6_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 6.410e-5
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   70 ICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILD 246
            I DSRND N I++Q  +A++ LHN FV+  G +F +AR AT+  +Q +++   L  + D
Sbjct:  200 IGDSRNDENLIVAQTHLAFLRLHNSFVE-RGMDFTEARQATVFHYQWLIVNSYLDEVCD 257          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: A0A4R6JL86_9ACTN (Heme peroxidase n=1 Tax=Actinoplanes brasiliensis TaxID=52695 RepID=A0A4R6JL86_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 6.420e-5
Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    1 TNGRTKFAMNGRDYRRFRSGFAR-------ICDSRNDNNRILSQITVAWMNLHNKFVDD---EGFN----FAQARDATIKEWQAVVLTDLLPNILDGEV 255
            T   T   +NG D  R   G  +       I D RND N +L+Q  +A+++ HN+ VD    +G      F  AR+  ++ +Q VVLTD+LP ++   +
Sbjct:  151 TGAGTDVNLNGYDLPRVTHGETKAERQAPLIADPRNDQNLLLAQTHLAFLHFHNRVVDQLIHDGLRGPALFRAARETVVRHYQWVVLTDVLPRVVQPSI 249          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: UPI00131F094D (heme peroxidase family protein n=1 Tax=Planctomonas deserti TaxID=2144185 RepID=UPI00131F094D)

HSP 1 Score: 49.7 bits (117), Expect = 6.440e-5
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   37 DYRRFRSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDGEVRV 261
            D  R   G A I D RND N I++Q+ +A++ LHN+FV+  G +FA+A+  T   +Q +++ D LP I+ G+  V
Sbjct:  207 DLPRQADGKAIIGDPRNDENLIVAQLHLAFLQLHNRFVES-GQSFAEAQRLTRWHFQWLIVNDFLPRIV-GQAMV 279          
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Match: UPI0016699051 (heme peroxidase family protein n=1 Tax=Undibacterium terreum TaxID=1224302 RepID=UPI0016699051)

HSP 1 Score: 49.7 bits (117), Expect = 6.440e-5
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   55 SGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKE--------WQAVVLTDLLPNILDGEV 255
            S  A I D RND N I+SQ+  A++ LHN+ VD++ F     +DAT +E        +Q VVL D LP+I   E+
Sbjct:  180 SARALIGDKRNDENVIVSQLHSAFLQLHNRLVDEDAF-----KDATFEEIQRQVRWHYQYVVLNDFLPHICGKEL 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20545.5326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A4V6MTD2_9RHOB5.320e-646.77Peroxidase n=1 Tax=Paracoccus subflavus TaxID=2528... [more]
A0A2N4T0L1_9MICC4.710e-539.73Uncharacterized protein n=3 Tax=Kocuria TaxID=5749... [more]
A0A378GZ14_KOCRO4.710e-540.58Animal haem peroxidase n=8 Tax=Kocuria TaxID=57493... [more]
A0A3A4RCN6_9BURK6.410e-540.68Peroxidase n=1 Tax=Comamonadaceae bacterium TaxID=... [more]
A0A4R6JL86_9ACTN6.420e-532.32Heme peroxidase n=1 Tax=Actinoplanes brasiliensis ... [more]
UPI00131F094D6.440e-540.00heme peroxidase family protein n=1 Tax=Planctomona... [more]
UPI00166990516.440e-541.33heme peroxidase family protein n=1 Tax=Undibacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20545contigH-paniculata_contig20545:245..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog382464.ABSI01000010_gene3299
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Large extracellular alpha-helical protein
EggNOG OGsCOG2373@1,COG2373@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.195763-CDS-H-paniculata_contig20545:244..4841622929535.195763-CDS-H-paniculata_contig20545:244..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20545 245..484 -
1691480902.9171426-CDS-H-paniculata_contig20545:244..4841691480902.9171426-CDS-H-paniculata_contig20545:244..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20545 245..484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929535.2080193-UTR-H-paniculata_contig20545:484..5081622929535.2080193-UTR-H-paniculata_contig20545:484..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20545 485..508 -
1691480902.9316611-UTR-H-paniculata_contig20545:484..5081691480902.9316611-UTR-H-paniculata_contig20545:484..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20545 485..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20545.5326.1prot_H-paniculata_contig20545.5326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20545 245..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20545.5326.1

>prot_H-paniculata_contig20545.5326.1 ID=prot_H-paniculata_contig20545.5326.1|Name=mRNA_H-paniculata_contig20545.5326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MNGRDYRRFRSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFA
QARDATIKEWQAVVLTDLLPNILDGEVRV*
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mRNA from alignment at H-paniculata_contig20545:245..508-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20545.5326.1 ID=mRNA_H-paniculata_contig20545.5326.1|Name=mRNA_H-paniculata_contig20545.5326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig20545:245..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACGGCCGAACCAAGTTCGCCATGAACGGTCGAGACTACAGGCGGTT CCGTTCTGGATTCGCTCGCATCTGCGACTCTCGCAACGACAACAACCGCA TCCTGAGCCAAATAACCGTGGCTTGGATGAATCTGCACAACAAGTTCGTG GACGACGAGGGTTTCAATTTTGCGCAGGCTCGCGACGCCACGATCAAGGA GTGGCAGGCCGTTGTGCTGACGGACCTCCTGCCTAACATCCTGGACGGCG AGGTGCGTGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20545:245..508-

>mRNA_H-paniculata_contig20545.5326.1 ID=mRNA_H-paniculata_contig20545.5326.1|Name=mRNA_H-paniculata_contig20545.5326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20545:245..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGGTCGAGACTACAGGCGGTTCCGTTCTGGATTCGCTCGCATCTG
CGACTCTCGCAACGACAACAACCGCATCCTGAGCCAAATAACCGTGGCTT
GGATGAATCTGCACAACAAGTTCGTGGACGACGAGGGTTTCAATTTTGCG
CAGGCTCGCGACGCCACGATCAAGGAGTGGCAGGCCGTTGTGCTGACGGA
CCTCCTGCCTAACATCCTGGACGGCGAGGTGCGTGTATGAATGAACGGTC
GAGACTACAGGCGGTTCCGTTCTGGATTCGCTCGCATCTGCGACTCTCGC
AACGACAACAACCGCATCCTGAGCCAAATAACCGTGGCTTGGATGAATCT
GCACAACAAGTTCGTGGACGACGAGGGTTTCAATTTTGCGCAGGCTCGCG
ACGCCACGATCAAGGAGTGGCAGGCCGTTGTGCTGACGGACCTCCTGCCT
AACATCCTGGACGGCGAGGTGCGTGTATGA
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