mRNA_H-paniculata_contig20530.5323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20530.5323.1
Unique NamemRNA_H-paniculata_contig20530.5323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A6H5JU13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU13_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.900e-24
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYIH 186
            +VLAGALQDDCRAVLRGERTFGKGLVQAVYGL DG GLILTVAQYETPRG YIH
Sbjct:  434 EVLAGALQDDCRAVLRGERTFGKGLVQAVYGLADGQGLILTVAQYETPRGTYIH 487
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A835YMM1_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMM1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.040e-18
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYI 183
            +VLAGAL DDCRA+L G R+FGKGL+QAVYGL+DGSGLI+TVA+YETPRG  I
Sbjct:  320 EVLAGALHDDCRALLMGTRSFGKGLIQAVYGLSDGSGLIVTVARYETPRGTNI 372
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A7S3XXB5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXB5_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 6.070e-17
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYIH 186
            +VL+GAL D+CRA L G R+FGKGL+QAVYGL DGSGL++TVA+YETPRG  I+
Sbjct:  244 EVLSGALHDNCRAALVGSRSFGKGLIQAVYGLNDGSGLVMTVARYETPRGTDIN 297
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: M2Y311_GALSU (Carboxyl-terminal processing protease n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y311_GALSU)

HSP 1 Score: 81.6 bits (200), Expect = 1.220e-16
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    7 YYYTMQKVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYIH 186
            Y  +  ++LA AL D+CRAVL GE+TFGKGLVQAV+GL+DG GLILTVA+Y+TP    IH
Sbjct:  388 YSASASEILASALHDNCRAVLVGEKTFGKGLVQAVFGLSDGGGLILTVAEYQTPNHTNIH 447
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: K8Z843_NANGC (Carboxyl-terminal processing protease n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z843_NANGC)

HSP 1 Score: 80.5 bits (197), Expect = 3.210e-16
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRG 174
            ++LA AL D+CRAVL G+RTFGKGLVQ V+GL DG GL++TVA+YETPRG
Sbjct:  442 EILASALHDNCRAVLMGQRTFGKGLVQGVFGLNDGKGLVMTVAKYETPRG 491
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A7S0AXK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AXK5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.290e-16
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRG 174
            +VLAGAL D CRAV+ G ++FGKGL+QAVYGL +GSGL+LTVA+Y TP G
Sbjct:   30 EVLAGALHDQCRAVVMGSKSFGKGLIQAVYGLKNGSGLVLTVAKYVTPAG 79
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A7S2XWX3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWX3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.970e-16
Identity = 35/50 (70.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRG 174
            +VLAGAL D+CRAVL G++++GKGL+QAVYGL+DGSGL++TVA+Y+TP G
Sbjct:  425 EVLAGALHDNCRAVLVGDKSYGKGLIQAVYGLSDGSGLVMTVAKYQTPSG 474
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A7S4R018_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R018_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.130e-15
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYI 183
            +VLAG+L+D+CRAV+ GE +FGKGL+QAVYGL +GSGL+LTVA+Y TP GD I
Sbjct:  504 EVLAGSLRDNCRAVVMGEPSFGKGLIQAVYGLKNGSGLVLTVARYVTPNGDDI 556
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A7S1GRH5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRH5_CYCTE)

HSP 1 Score: 73.6 bits (179), Expect = 3.050e-15
Identity = 32/50 (64.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRG 174
            +VLAG+L D+CRAV+ G+++FGKGL+QAVYGL +G+GL++TVA+Y TP G
Sbjct:   24 EVLAGSLHDNCRAVVMGDKSFGKGLIQAVYGLKNGAGLVVTVAKYVTPSG 73
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BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Match: A0A2V3J0G2_9FLOR (Carboxyl-terminal-processing peptidase 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0G2_9FLOR)

HSP 1 Score: 77.4 bits (189), Expect = 3.670e-15
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   25 KVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETPRGDYI 183
            +VLAG L+D CRA L GER+FGKG++Q V+GL DG G+++TVA+Y TPRGD I
Sbjct:  340 EVLAGGLRDSCRAALVGERSFGKGVIQGVFGLQDGGGIVVTVAEYRTPRGDRI 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20530.5323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU13_9PHAE2.900e-2492.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMM1_9STRA2.040e-1877.36ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S3XXB5_HETAK6.070e-1770.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M2Y311_GALSU1.220e-1665.00Carboxyl-terminal processing protease n=1 Tax=Gald... [more]
K8Z843_NANGC3.210e-1672.00Carboxyl-terminal processing protease n=3 Tax=Mono... [more]
A0A7S0AXK5_9STRA5.290e-1670.00Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2XWX3_9STRA5.970e-1670.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4R018_9STRA1.130e-1569.81Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1GRH5_CYCTE3.050e-1564.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A2V3J0G2_9FLOR3.670e-1564.15Carboxyl-terminal-processing peptidase 1, chloropl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20530contigH-paniculata_contig20530:466..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.6e-14
Seed eggNOG ortholog130081.XP_005706724.1
KEGG koko:K03797
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009579,GO:0016787,GO:0019538,GO:0031977,GO:0043170,GO:0044238,GO:0044424,GO:0044436,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGs2QT7D@2759,COG0793@1
EC3.4.21.102
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size186
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.8736699-CDS-H-paniculata_contig20530:465..6331622929534.8736699-CDS-H-paniculata_contig20530:465..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20530 466..633 -
1691480902.7680638-CDS-H-paniculata_contig20530:465..6331691480902.7680638-CDS-H-paniculata_contig20530:465..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20530 466..633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.8874316-UTR-H-paniculata_contig20530:633..6511622929534.8874316-UTR-H-paniculata_contig20530:633..651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20530 634..651 -
1691480902.7797377-UTR-H-paniculata_contig20530:633..6511691480902.7797377-UTR-H-paniculata_contig20530:633..651Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20530 634..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20530.5323.1prot_H-paniculata_contig20530.5323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20530 466..633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20530.5323.1

>prot_H-paniculata_contig20530.5323.1 ID=prot_H-paniculata_contig20530.5323.1|Name=mRNA_H-paniculata_contig20530.5323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MQKVLAGALQDDCRAVLRGERTFGKGLVQAVYGLTDGSGLILTVAQYETP
RGDYIH
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mRNA from alignment at H-paniculata_contig20530:466..651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20530.5323.1 ID=mRNA_H-paniculata_contig20530.5323.1|Name=mRNA_H-paniculata_contig20530.5323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig20530:466..651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCTTATTATTACACGATGCAAAAGGTGCTGGCCGGCGCGTTACAAGA
CGATTGCCGAGCGGTGCTCCGCGGCGAGAGGACGTTCGGTAAGGGGCTCG
TGCAGGCGGTGTATGGGTTAACGGATGGAAGTGGACTGATCCTTACCGTC
GCGCAGTACGAAACCCCCAGGGGGGACTACATACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20530:466..651-

>mRNA_H-paniculata_contig20530.5323.1 ID=mRNA_H-paniculata_contig20530.5323.1|Name=mRNA_H-paniculata_contig20530.5323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig20530:466..651- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAGGTGCTGGCCGGCGCGTTACAAGACGATTGCCGAGCGGTGCT
CCGCGGCGAGAGGACGTTCGGTAAGGGGCTCGTGCAGGCGGTGTATGGGT
TAACGGATGGAAGTGGACTGATCCTTACCGTCGCGCAGTACGAAACCCCC
AGGGGGGACTACATACACATGCAAAAGGTGCTGGCCGGCGCGTTACAAGA
CGATTGCCGAGCGGTGCTCCGCGGCGAGAGGACGTTCGGTAAGGGGCTCG
TGCAGGCGGTGTATGGGTTAACGGATGGAAGTGGACTGATCCTTACCGTC
GCGCAGTACGAAACCCCCAGGGGGGACTACATACAC
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