mRNA_H-paniculata_contig20522.5321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20522.5321.1
Unique NamemRNA_H-paniculata_contig20522.5321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20522.5321.1 vs. uniprot
Match: D8LS80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS80_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.650e-16
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 EKHIRQHQQVAAINKERALNRPSHQRHAERLRTGHDVISNQDFSGREGRLPPPPRAR 171
            E +IRQH++ AA +++R LNRPSH RH E LRTGH+VISNQDF+GREG+ PP PRA+
Sbjct:  158 EDNIRQHERAAAASEQRTLNRPSHMRHVEVLRTGHNVISNQDFAGREGKPPPQPRAK 214
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BLAST of mRNA_H-paniculata_contig20522.5321.1 vs. uniprot
Match: A0A6H5L4A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.930e-15
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 EKHIRQHQQVAAINKERALNRPSHQRHAERLRTGHDVISNQDFSGREGRLPPPPRAR 171
            E +IRQH++ AA ++++ LNRPSH RH E LRTGH+VISNQDF+GREG+ PP PRA+
Sbjct:  237 EDNIRQHERAAAASEQQILNRPSHMRHVEVLRTGHNVISNQDFAGREGKPPPQPRAK 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20522.5321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS80_ECTSI5.650e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4A6_9PHAE3.930e-1564.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20522contigH-paniculata_contig20522:4161..4331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.783112-CDS-H-paniculata_contig20522:4160..43311622929534.783112-CDS-H-paniculata_contig20522:4160..4331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 4161..4331 -
1691480902.7495632-CDS-H-paniculata_contig20522:4160..43311691480902.7495632-CDS-H-paniculata_contig20522:4160..4331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20522 4161..4331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20522.5321.1prot_H-paniculata_contig20522.5321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20522 4161..4331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20522.5321.1

>prot_H-paniculata_contig20522.5321.1 ID=prot_H-paniculata_contig20522.5321.1|Name=mRNA_H-paniculata_contig20522.5321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
EKHIRQHQQVAAINKERALNRPSHQRHAERLRTGHDVISNQDFSGREGRL
PPPPRAR
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mRNA from alignment at H-paniculata_contig20522:4161..4331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20522.5321.1 ID=mRNA_H-paniculata_contig20522.5321.1|Name=mRNA_H-paniculata_contig20522.5321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig20522:4161..4331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAACACATCCGACAACACCAGCAAGTCGCCGCCATCAACAAAGAGCG
CGCCCTAAACCGCCCGTCGCACCAGCGACATGCTGAGCGACTGCGCACAG
GCCACGACGTGATTTCAAACCAGGACTTCTCTGGCAGGGAAGGCCGACTG
CCACCGCCACCCCGTGCCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20522:4161..4331-

>mRNA_H-paniculata_contig20522.5321.1 ID=mRNA_H-paniculata_contig20522.5321.1|Name=mRNA_H-paniculata_contig20522.5321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig20522:4161..4331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAACACATCCGACAACACCAGCAAGTCGCCGCCATCAACAAAGAGCG
CGCCCTAAACCGCCCGTCGCACCAGCGACATGCTGAGCGACTGCGCACAG
GCCACGACGTGATTTCAAACCAGGACTTCTCTGGCAGGGAAGGCCGACTG
CCACCGCCACCCCGTGCCCGAGAAAAACACATCCGACAACACCAGCAAGT
CGCCGCCATCAACAAAGAGCGCGCCCTAAACCGCCCGTCGCACCAGCGAC
ATGCTGAGCGACTGCGCACAGGCCACGACGTGATTTCAAACCAGGACTTC
TCTGGCAGGGAAGGCCGACTGCCACCGCCACCCCGTGCCCGA
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