mRNA_H-paniculata_contig20517.5316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20517.5316.1
Unique NamemRNA_H-paniculata_contig20517.5316.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20517.5316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20517contigH-paniculata_contig20517:2311..3011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size703
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.1636915-UTR-H-paniculata_contig20517:2310..26181622929534.1636915-UTR-H-paniculata_contig20517:2310..2618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20517 2311..2618 +
1691480902.5483265-UTR-H-paniculata_contig20517:2310..26181691480902.5483265-UTR-H-paniculata_contig20517:2310..2618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20517 2311..2618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929534.1898-CDS-H-paniculata_contig20517:2618..30111622929534.1898-CDS-H-paniculata_contig20517:2618..3011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20517 2619..3011 +
1691480902.5592484-CDS-H-paniculata_contig20517:2618..30111691480902.5592484-CDS-H-paniculata_contig20517:2618..3011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20517 2619..3011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20517.5316.1prot_H-paniculata_contig20517.5316.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20517 2619..3011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20517.5316.1

>prot_H-paniculata_contig20517.5316.1 ID=prot_H-paniculata_contig20517.5316.1|Name=mRNA_H-paniculata_contig20517.5316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MTTKRSRGDVYRLCCWRRRQFVYREVVAAGDFGGGPTPQNCHPPRQRRCH
RHSRNSRRSILSTKHFYQLRPCLPSPLRNLPTPISKTNYSRIGSWSLRGC
GSGACVSSRTSSTPCLSHGSQKSRFLAPHVR
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mRNA from alignment at H-paniculata_contig20517:2311..3011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20517.5316.1 ID=mRNA_H-paniculata_contig20517.5316.1|Name=mRNA_H-paniculata_contig20517.5316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=701bp|location=Sequence derived from alignment at H-paniculata_contig20517:2311..3011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATGTATATCATTTATCGACCACAAGAGCAATCGGCGCTCACTGTTG
GCGCTGTCGGGCCTGAAACACCCTGGTGAACGTCACCGATGGCCCTGCCT
GCCACTTCACTTCCCCCGTCCGACGTGGCCCTCGCCTTGCCCCAAGATGG
GGAGGGAGGCGACGTAGAGGAGGGGGGGAACAGGGAGGAAGAAGAACAAG
TGAGCGCCTTGTTTCCCCGCGACTGAGACTGCAGTACCCGTCGGACACCA
CAGCCTTGAGATGGGGAAGCGGGGGAGGCGGGGGAGGAGGAGGAGGAGGG
CGTAGACGATGACGACGAAGAGGAGCCGCGGTGACGTTTACCGGCTTTGT
TGTTGGCGTCGGCGTCAGTTTGTTTACCGTGAGGTTGTGGCCGCTGGGGA
TTTCGGCGGTGGTCCCACACCACAGAATTGCCATCCGCCCCGTCAGCGCC
GCTGCCATCGCCACTCGAGGAACTCGCGGCGGTCAATCCTTTCGACCAAG
CATTTCTATCAACTGCGCCCTTGCTTACCTTCCCCTCTTCGAAATCTTCC
GACACCGATCTCGAAAACGAATTACTCCCGCATCGGCAGCTGGAGTCTTC
GTGGCTGTGGCAGCGGCGCTTGTGTCTCATCTCGCACTTCGTCGACGCCG
TGTTTGAGCCACGGGTCCCAGAAATCGCGTTTTCTGGCCCCCCACGTCCG
T
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Coding sequence (CDS) from alignment at H-paniculata_contig20517:2311..3011+

>mRNA_H-paniculata_contig20517.5316.1 ID=mRNA_H-paniculata_contig20517.5316.1|Name=mRNA_H-paniculata_contig20517.5316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig20517:2311..3011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACGAAGAGGAGCCGCGGTGACGTTTACCGGCTTTGTTGTTGGCG
TCGGCGTCAGTTTGTTTACCGTGAGGTTGTGGCCGCTGGGGATTTCGGCG
GTGGTCCCACACCACAGAATTGCCATCCGCCCCGTCAGCGCCGCTGCCAT
CGCCACTCGAGGAACTCGCGGCGGTCAATCCTTTCGACCAAGCATTTCTA
TCAACTGCGCCCTTGCTTACCTTCCCCTCTTCGAAATCTTCCGACACCGA
TCTCGAAAACGAATTACTCCCGCATCGGCAGCTGGAGTCTTCGTGGCTGT
GGCAGCGGCGCTTGTGTCTCATCTCGCACTTCGTCGACGCCGTGTTTGAG
CCACGGGTCCCAGAAATCGCGTTTTCTGGCCCCCCACGTCCGTATGACGA
CGAAGAGGAGCCGCGGTGACGTTTACCGGCTTTGTTGTTGGCGTCGGCGT
CAGTTTGTTTACCGTGAGGTTGTGGCCGCTGGGGATTTCGGCGGTGGTCC
CACACCACAGAATTGCCATCCGCCCCGTCAGCGCCGCTGCCATCGCCACT
CGAGGAACTCGCGGCGGTCAATCCTTTCGACCAAGCATTTCTATCAACTG
CGCCCTTGCTTACCTTCCCCTCTTCGAAATCTTCCGACACCGATCTCGAA
AACGAATTACTCCCGCATCGGCAGCTGGAGTCTTCGTGGCTGTGGCAGCG
GCGCTTGTGTCTCATCTCGCACTTCGTCGACGCCGTGTTTGAGCCACGGG
TCCCAGAAATCGCGTTTTCTGGCCCCCCACGTCCGT
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