mRNA_H-paniculata_contig20502.5314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20502.5314.1
Unique NamemRNA_H-paniculata_contig20502.5314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.150e-18
Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P I FKGTPFIP T S  G++      S+ WEI PA  ++  HP +GMS+G         R   G I+G+        G I Q        +LVL D KCH D+ F  +  +DANT  I I GG+T + QP D +LNK++K
Sbjct:   24 ADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMK 166          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.610e-17
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P ITFKGTPF P T S  G++      S+ WEI PA  ++ GHP +G+S+G         R   G I+G         G I Q        +LVL D K H D+ F  +  +DANT  I I GGLT + QP D +LNK++K
Sbjct:   44 ADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPN-NGSIVQ----QRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMK 186          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.640e-17
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P I FKGTPF P T S  G++      S+ WEI PA  ++ GHP +GMS+G         R   G I+G+        G I Q        +LVL D KCH D+ F  +  +DANT  I I G LT + QP D +LNK++K
Sbjct:  163 ADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMK 305          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.920e-17
Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P I FKGTPFIP   S  G++      S+ WEI PA  ++  HP +GMS+G         R   G I+G+        G I Q        +LVL D KCH D+ +  +  +DANT  I+I GGLT + QP D +LNK++K
Sbjct:  163 ADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMK 305          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.570e-15
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFI-PHTHSHGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P I FKGTPF  P    +G++      S+ WEI PA  ++ GHP +GMS+G         R   G  +G+        G I Q        +LVL D KCH D+ F  +  +DANT  I I GGLT + QP D  LNK++K
Sbjct:    8 ADGKKVSPRIIFKGTPFTSPTVSGNGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMK 148          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5K2N7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.790e-15
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  492 LRGKYAAWSATTMADPKTRKLKLPGRGAVSMWVKEV*DQIPADLMRKCLNMCGFTLNLDGRENHEWYERAFGKNY 716
            LRGKY A+SA+ +AD ++R+LK P RG VS W KE    I  +  + C  +C  TL LDG E+H W E   G++Y
Sbjct:   10 LRGKYTAYSASAVADARSRELKAPERGVVSAWCKEAWKSINPETFKTCFKICDLTLALDGSEDHAWCEHNLGEDY 84          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.380e-10
Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHSHG------EAGSIVWEISPAKHSRCG-H-------------------PPDGMSYGGARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
            +DG+KV+P I FKGTPFIP T S           S+ WEI  A  +R G H                   PP   S+   R   G I G+        G I Q        +LVL D KCH D+ F  +  + A T  I I GGLT++ QP D +LNK++K
Sbjct:  345 ADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMK 499          
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5JUV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-7
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG 237
            +DG+KV+P I FKGTPFIP T S  G++      S+ WEI PA  ++ G+PP+GMS G
Sbjct:   36 ADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVTWEIHPANRAKHGYPPNGMSVG 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L4U1_9PHAE3.150e-1841.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE2.610e-1741.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE6.640e-1741.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE6.920e-1740.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE2.570e-1539.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K2N7_9PHAE2.790e-1546.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRZ8_9PHAE7.380e-1036.02DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JUV9_9PHAE1.230e-751.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20502contigH-paniculata_contig20502:1184..2232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1049
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20502.5314.1prot_H-paniculata_contig20502.5314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20502 1807..2121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929533.8507202-UTR-H-paniculata_contig20502:1183..18061622929533.8507202-UTR-H-paniculata_contig20502:1183..1806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20502 1184..1806 +
1691480902.4089723-UTR-H-paniculata_contig20502:1183..18061691480902.4089723-UTR-H-paniculata_contig20502:1183..1806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20502 1184..1806 +
1622929533.8802016-UTR-H-paniculata_contig20502:2121..22321622929533.8802016-UTR-H-paniculata_contig20502:2121..2232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20502 2122..2232 +
1691480902.426102-UTR-H-paniculata_contig20502:2121..22321691480902.426102-UTR-H-paniculata_contig20502:2121..2232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20502 2122..2232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929533.8662555-CDS-H-paniculata_contig20502:1806..21211622929533.8662555-CDS-H-paniculata_contig20502:1806..2121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20502 1807..2121 +
1691480902.4174242-CDS-H-paniculata_contig20502:1806..21211691480902.4174242-CDS-H-paniculata_contig20502:1806..2121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20502 1807..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20502.5314.1

>prot_H-paniculata_contig20502.5314.1 ID=prot_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MRKCLNMCGFTLNLDGRENHEWYERAFGKNYRMILAEQRAEWEDVHGITL
ESLQLSVIQGNEQTPSALTHALKDVLEKLAKKPKGGTRHGRRERWERYRS
VRCY*
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mRNA from alignment at H-paniculata_contig20502:1184..2232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20502.5314.1 ID=mRNA_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-paniculata_contig20502:1184..2232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACCATACTCCGTTCCTGCCGTTTTCTCATTCTCCGCAGGCAAGGAGA AGGAGCGCTTTATAATTTGCCTTGCTGTGAGAGTGATGGGCGAAAGGTGA CTCCGCCCATCACTTTTAAGGGCACGCCATTCATCCCCCACACACACTCA CACGGGGAAGCCGGTTCTATCGTGTGGGAGATCAGTCCGGCCAAACACAG CCGGTGTGGGCATCCCCCGGACGGCATGTCGTACGGGGGTGCACGAATAA CAGCTGGTGTGATAAATGGGAATGCAGGCTGTGACTATGGATAAACTGGA AGGATCGCCCAGGGACAAAATTGGCCAGAATCGAGTGTGTTGGTACTCTA CGACTGCAAGTGCCACTGCGACCAGAAGTTCCCGGAGAGCTGGAACAAGG ACGCCAACACGGACACCATCCTCATTCTTGGTGGCCTCACAGCGGTTAAC CAACCTTGTGACAGCGTGCTCAACAAGGAGATAAAGGAGGGTTGCGTGGA AAATACGCTGCCTGGAGCGCCACTACCATGGCAGACCCGAAAACCCGTAA ACTCAAGCTCCCCGGGAGGGGTGCGGTCTCAATGTGGGTCAAGGAGGTCT GAGATCAAATACCAGCCGACCTGATGAGGAAGTGCTTGAACATGTGCGGA TTCACGCTCAACCTCGACGGGAGAGAGAACCATGAGTGGTATGAGCGCGC GTTCGGCAAGAACTACCGAATGATCCTGGCGGAGCAGCGGGCCGAGTGGG AGGATGTACACGGCATTACCTTGGAGTCGCTACAGCTATCCGTTATACAG GGCAACGAACAGACCCCCAGCGCCCTCACCCATGCGTTGAAGGACGTTTT AGAGAAGTTAGCCAAAAAACCGAAGGGCGGGACGAGGCACGGACGAAGAG AACGATGGGAGCGATATCGAAGCGTTCGATGTTATTGATTTGGGAAATGA TTCTGATTCCGATGTCAAAGTGCTGTAGGGTCAGTTGTTGCTGTGCGCTC GTTCAGCACGCAGCCGTTTCATTAGGTTGGTGGAACAGTTCCTAGTTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig20502:1184..2232+

>mRNA_H-paniculata_contig20502.5314.1 ID=mRNA_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig20502:1184..2232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGTGCTTGAACATGTGCGGATTCACGCTCAACCTCGACGGGAG
AGAGAACCATGAGTGGTATGAGCGCGCGTTCGGCAAGAACTACCGAATGA
TCCTGGCGGAGCAGCGGGCCGAGTGGGAGGATGTACACGGCATTACCTTG
GAGTCGCTACAGCTATCCGTTATACAGGGCAACGAACAGACCCCCAGCGC
CCTCACCCATGCGTTGAAGGACGTTTTAGAGAAGTTAGCCAAAAAACCGA
AGGGCGGGACGAGGCACGGACGAAGAGAACGATGGGAGCGATATCGAAGC
GTTCGATGTTATTGAATGAGGAAGTGCTTGAACATGTGCGGATTCACGCT
CAACCTCGACGGGAGAGAGAACCATGAGTGGTATGAGCGCGCGTTCGGCA
AGAACTACCGAATGATCCTGGCGGAGCAGCGGGCCGAGTGGGAGGATGTA
CACGGCATTACCTTGGAGTCGCTACAGCTATCCGTTATACAGGGCAACGA
ACAGACCCCCAGCGCCCTCACCCATGCGTTGAAGGACGTTTTAGAGAAGT
TAGCCAAAAAACCGAAGGGCGGGACGAGGCACGGACGAAGAGAACGATGG
GAGCGATATCGAAGCGTTCGATGTTATTGA
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