mRNA_H-paniculata_contig2050.5313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2050.5313.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI) HSP 1 Score: 322 bits (825), Expect = 8.870e-88 Identity = 372/1343 (27.70%), Postives = 516/1343 (38.42%), Query Frame = 1
Query: 634 AAICLQRYTRGRAVRSLFHDISWAVMYLHGSLEPPRLVDCVEFRLDYALFYELKRIARRWTTERPNGAVAHQTFVEPAVLRRKTELPISQCNISREHALLRYTGVNRIAMASCGDGLLLSVFVSTRY------------PSGQIGRKAMLLARFGVARAAHVRIQRAILGVCEKRGGDGGDNFTNAAANREARLVLWALHDSAARIVQEEMRYYARFRM------AMKKHQPQCRWPT-TAKSTCG--STRGDGAVS----------SLATYSTELPDNSAVGDGFANQADIGRVSNINSSSYWG-----------LRYFKVGPVNAEDRSELADRGANISTLATPETCLNTTFYTSSATRXXXXXXXXXXXXXXXXXXXXXPLSEPGRSSPYPAGVPLRMPG-------APSLLWQDDGIAQRVPAGGIGDDVTEEQTPVGLDSGGNNRWSAWR------QATGSNDMGVE---RYEESRHYSIGSKRQCSNNLTGKYSMFGDGVAGGYRW----SKEFGRRNSRSNEAHMRRNKSRSCHALRSVAALEYQGLFVVPEIIMLQRIFRARRAQGKLGAMLDLEEGRDHEWPKRRQKERDKPAIRWKSSFSKLRHLPESQSSSALAIPPPEGCMCPGVADEVVRHSLECAHGAENGRLMIKHLPYANVQWGLAVAHDLASWHGGLRKRHYFGCFLAYLEIRRKRKAALRVRVEMRMTQRLKSWAKDLATTKRIIAADVKARCHPEVVGAHIRFLSRRITWECLLSDLGELLWAQAVATLAQQCPHYSPRIAVNTPARFGKAFADSSCSASLELRVALNSHPVSRNRQSHQQRQQSKSKRRYVESFTCGIAQTFAENGTGSRLGGKTRLSVIERGGMAAGHECFPSPV-------RAEPFVLHPGQASRLKEIMEEDTLLGLHSWLARALTVSRLQFLPSVPFTQRVGNCVVNAHDAELRAESQLTRRYWRFLDEVSKSLLILVRAASEAEALAAEAGEWSFLLGFAQDLSASGLLDLPCALPPLXXXXXXXXXXXXXXXXNLNQFSRLEPNEDESVSGRRLMLPPKPKAGQNELSDGVGGGLEPTIRYSRSVFLHQPCLYLTPVCIVPTGSRWFSPGRDLCRRCYCRQGLARHISCTRCGFSHAMSTTMTSSKGRREREGTGPVGWKHFGKIDAPLELFVIHAAYACILHPGCCPASRKRDGTNQLIKPRGGCSGWWNGGNVDQASILSWWRAVCGGNQAAALLRQKGYDSVGKLFNIATYFRENMNTSCFGVAVEGPERGESKKNGSDRFLRRLVKDDDLAAKITSLFRMLKLAFEELRKHKRWPQVSKMAVEHALRSLRPPR 4455
AA+CLQR+ RGR R +F ++ ++++ + PP++ L L I + R RR+ S + A+ GV +A+ S + V R P + G A + R + G + R G+ AA REA +VLWAL D+AAR+VQEEMR +AR + ++ +P+ +KST G S G G V ++A + + SA + + GR + + S G R G E++S AD + S+ TP +T T S+ R P + +P G R + + +D + + T ++P S + WS + Q + D E +EE R G N T G V RW S+E R R NEAH+RRNKSR LR +A LE QG FV+PEII +Q R G G+ +IR ESQ+ A G ++ PYA+ W LAVA+++ SW GGLR+R+YFG + +L RR RKAALR RV RM +RL++WA LA KR + ++KAR E+VGAH+RFLSR TWE LL DL ++L AV+ Q S ++A+ T G+ S S + + P +R SH Q++ S R+ S G T+A+ G + + G + GH + R + L EI++ L LH W+ L S +QF+PSVP RVG + + E AE+QLTRRYWR L+ VS ++ ++V A EA LAAEAGEW LLGFA L + G + LPC LP L + S++G P + K+ L+LF++HAAYAC+LHPG P S + GG GWWNGG+ +QA WWRAVCGG +AA LR G D+VGKL+ ++S +A G K + LRRLV DDDLA KI SL R L AFEELRK WP VSK A++ R L+ PR
Sbjct: 2 AAVCLQRHARGRPQRRVFRELVRPALHIYVAQGPPQISPFGIGDRRAILLSRLMAILDAYNGLRGLVPTLSNLTCRSRKHRRRNRAAASPPLFGSDAAMTSTDGV--VALPSSSHPAAKTEVVVQRAIVSDDTERPDQGPDSREGEDAASAEAPNSGKCTPGRTPKG--GAQDARRGNNSSEAAQAA-EREATIVLWALRDAAARVVQEEMRCFARRKRWLLVGTGQRQREPEEHGDEGRSKSTVGVESPTGTGVVYQPEVAGGLPWAIAAGVSPIAPPSASFSSSSARGTTGRTTMAGTPSATGGSTGKTMTADTRRSSVTGTTMGENKSRSAD-DSWASSSPTPNRSNHTACSTVSSARSSPAT----------------PRTTTAAGTPASGGYTGRXXXXXXXXXXSATRRTKDSACGESPETYSVLVSPTTSRSPHTAGSAVSTPWSFQQSARTRTQGDSTGDPAPELAWTWEEER--GEGEPPDEKNAWTNARRTTGRAV----RWPILPSEE---RKKRENEAHLRRNKSRLGVTLRGLANLECQGNFVLPEIIRMQDKADIRTGPGATGSA----------------------SIRV-----------ESQNGQRAA-----------------------GEGRQDA-------PYASASWSLAVAYNVGSWRGGLRQRYYFGRLVRFLAHRRSRKAALRERVTARMAKRLQAWATVLAKEKRSLVCEIKARAPAEIVGAHLRFLSRTGTWERLLLDLNQIL-ETAVSQREQAVGLLSEQVALETRGASGQGRTTHSARTST---ASPHRFPRARVGSSHNTHQRTSS--RHTSSRQGGSPDTWADGSFRVARGASSAEESGRKAGGSPGHPAIRENIAGSRHDSRRARLTAESRRRVGLTEIVDGRILRCLHPWIVTLLARSAVQFVPSVPHKHRVGFRMDDTRKVEALAETQLTRRYWRLLEGVSDAVSLVVAAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGLPCTLPALP--------------------------RNSSING---------------------------------------------------------PASSI--------------------------------------------------KVKESLDLFIVHAAYACVLHPG--PLSNA-----MVAAGLGGGLGWWNGGDTEQA----WWRAVCGGKEAAKRLRDDGCDTVGKLYTYVRGSAVGCSSSSSSLAGCGDGAAPKKARSRTKKLRRLVNDDDLATKIASLLRRLMSAFEELRKQHLWPTVSKAAIDRTNRRLQLPR 1100
BLAST of mRNA_H-paniculata_contig2050.5313.1 vs. uniprot
Match: A0A6H5KNB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB2_9PHAE) HSP 1 Score: 292 bits (748), Expect = 3.430e-77 Identity = 243/738 (32.93%), Postives = 326/738 (44.17%), Query Frame = 1
Query: 2434 PYANVQWGLAVAHDLASWHGGLRKRHYFGCFLAYLEIRRKRKAALRVRVEMRMTQRLKSWAKDLATTKRIIAADVKARCHPEVVGAHIRFLSRRITWECLLSDLGELLWAQAVATLAQQCPHYSPRIAVNTPARFGKAFADSSCSASLELRVAL----NSHPVSRNRQSHQQRQQSKSKRRYVESFTCGIAQTFAENGTGSRLGGKTRLSVIERGGMAAGHECFPSPV-------RAEPFVLHPGQASRLKEIMEEDTLLGLHSWLARALTVSRLQFLPSVPF-----------------------TQ------------------------------------------RVGNCVVNAHDAELRAESQLTRRYWRFLDEVSKSLLILVRAASEAEALAAEAGEWSFLLGFAQDLSASGLLDLPCALPPLXXXXXXXXXXXXXXXXNL-----NQFSRLEPNEDESVSGRRLMLPPKPKAGQNE----LSDGVGGGLEPTIRYSRSVFLHQPCLYLTPVCIVPTGSRWFSPGRDLCRRCYC-RQGL--ARHISCTRCGFSHAMSTTMTSSKGRREREGTGPVGWKHFGKIDAPLELFVIHAAYACILHPGCCPASRKRDGTNQLIKPRGGCSGWWNGGNVDQASILSWWRAVCGGNQAAALLRQKGYDSVGKLFNIATYFRENMNTSCFGVAVEGPERGESKKNGSDRFLRRLVKDDDLAAKITSLFRMLKLAFEELR 4383
PYAN W LAVA+D+ SW GGLR+R+YFG + +L RR RK ALR RV RM +RL++WA LA KR + ++KAR H E+VGAH+RFLSR TWE LL DL ++L A++ Q S ++A T G+ S ++ + A + H R R ++ + S G T+A+ G + + G + GH V R + + L EI++E L LH W+ L S +QF+PSVP TQ R+G C+ + E AE+QLTRRYWR L+ VS ++L++ A EA LAAEAGEW LLGFA L + G + LPC LP L + N F L P + V + P A + + G +P+ R + HQ + +WFS + LC C+ R G A C RCG +H + SSK R PV + F ++ L+LF++HAAYAC+LHPG PA+ + GG GWWNGG+ +QA WWRAVC G AA LR G D+VGKL+ TY R + S +A G + + LRRL+ D DLA KI SL R L A EELR
Sbjct: 485 PYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSRKGALRERVTARMAKRLQAWATVLAEEKRSLICEMKARAHAEIVGAHLRFLSRTGTWERLLLDLNQILQT-AMSQREQAIGLLSEQVAPETRGASGQGRTAHCESVRVDAKPARTPTDSPHRFLRARVGSSYNNHQRTSSTHTSSIQGGSPDTWADGSFPVACGEYSAEKSGRKAGGSPGHPATRENVAGSRHNSRRARLTAEFRRRAGLTEIVDERILRCLHPWIVTLLARSGVQFVPSVPHKHSVVLRFVPSMLDETVARFECNTQNSSASCRLHPAAHSPTLTPVSRSFLPWLIVARYLNIMPNVGARIGFCIDDTSKVEALAETQLTRRYWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVSDGHVGLPCTLPALPRKSSIKGPTSSIKVVGVMSKQANYF--LGPVRRKRVEYAPRLEGDAPAAQCQQQGPVAKEQHGQHHQPSARLYATGPTHQGGQGQAT-----SAPKWFSAHKSLCETCWALRTGASGAGGSKCQRCGRTHVRGFSHESSK-RGGDVTADPVPLQQFSQVKESLDLFIVHAAYACVLHPG--PANNAT-----VAGGLGGGLGWWNGGDTEQA----WWRAVCRGKGAAKRLRDDGCDTVGKLY---TYVRGSAVGSSSSLAGCGDGSPPKQAIFRTKKLRRLINDGDLATKIASLLRRLMSALEELR 1199 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2050.5313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2050.5313.1 >prot_H-paniculata_contig2050.5313.1 ID=prot_H-paniculata_contig2050.5313.1|Name=mRNA_H-paniculata_contig2050.5313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1493bp QLPASLRAIDSVAELYHDAARDVGLRVYGHSGGLAVSERYVLAEKREVFLback to top mRNA from alignment at H-paniculata_contig2050:6396..18709- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2050.5313.1 ID=mRNA_H-paniculata_contig2050.5313.1|Name=mRNA_H-paniculata_contig2050.5313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12314bp|location=Sequence derived from alignment at H-paniculata_contig2050:6396..18709- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2050:6396..18709- >mRNA_H-paniculata_contig2050.5313.1 ID=mRNA_H-paniculata_contig2050.5313.1|Name=mRNA_H-paniculata_contig2050.5313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8958bp|location=Sequence derived from alignment at H-paniculata_contig2050:6396..18709- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |