mRNA_H-paniculata_contig2049.5308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2049.5308.1
Unique NamemRNA_H-paniculata_contig2049.5308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2049.5308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2049contigH-paniculata_contig2049:14665..15053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size391
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.635533-UTR-H-paniculata_contig2049:14664..147381622929532.635533-UTR-H-paniculata_contig2049:14664..14738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2049 14665..14738 +
1691480901.843289-UTR-H-paniculata_contig2049:14664..147381691480901.843289-UTR-H-paniculata_contig2049:14664..14738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2049 14665..14738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.6460743-CDS-H-paniculata_contig2049:14738..150531622929532.6460743-CDS-H-paniculata_contig2049:14738..15053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2049 14739..15053 +
1691480901.860014-CDS-H-paniculata_contig2049:14738..150531691480901.860014-CDS-H-paniculata_contig2049:14738..15053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2049 14739..15053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2049.5308.1prot_H-paniculata_contig2049.5308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2049 14739..15053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2049.5308.1

>prot_H-paniculata_contig2049.5308.1 ID=prot_H-paniculata_contig2049.5308.1|Name=mRNA_H-paniculata_contig2049.5308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MRSSLLRRCLLRQPCLQSHEQYSRQYESYLCLGKVLCSTDTAGMASSRAI
FWGLLGGAVVSTSGFVLPPPPSAPVVHLHQVVRVFAFAPRDAGGKQLAAA
AATTT
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mRNA from alignment at H-paniculata_contig2049:14665..15053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2049.5308.1 ID=mRNA_H-paniculata_contig2049.5308.1|Name=mRNA_H-paniculata_contig2049.5308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=389bp|location=Sequence derived from alignment at H-paniculata_contig2049:14665..15053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCATCAACATACCAAACCCCTTTTTGAGGAAAATCTCCGGAGAAAGA
AGACCGTGGGTCTGAGTGATTGTAATGCGATCATCCTTATTGCGCCGCTG
TCTGCTTCGCCAGCCGTGCCTCCAGTCGCATGAACAGTACAGCAGACAGT
ACGAAAGTTATCTCTGTCTAGGGAAGGTGCTTTGCAGTACGGATACAGCT
GGCATGGCATCATCGCGTGCTATTTTTTGGGGTCTACTCGGAGGTGCAGT
AGTTTCCACCAGCGGTTTCGTTCTTCCGCCGCCCCCATCCGCACCAGTTG
TGCATCTTCATCAAGTTGTTCGCGTTTTCGCGTTTGCACCTCGAGATGCT
GGAGGAAAGCAACTAGCAGCAGCAGCAGCAACAACAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig2049:14665..15053+

>mRNA_H-paniculata_contig2049.5308.1 ID=mRNA_H-paniculata_contig2049.5308.1|Name=mRNA_H-paniculata_contig2049.5308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2049:14665..15053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATCATCCTTATTGCGCCGCTGTCTGCTTCGCCAGCCGTGCCTCCA
GTCGCATGAACAGTACAGCAGACAGTACGAAAGTTATCTCTGTCTAGGGA
AGGTGCTTTGCAGTACGGATACAGCTGGCATGGCATCATCGCGTGCTATT
TTTTGGGGTCTACTCGGAGGTGCAGTAGTTTCCACCAGCGGTTTCGTTCT
TCCGCCGCCCCCATCCGCACCAGTTGTGCATCTTCATCAAGTTGTTCGCG
TTTTCGCGTTTGCACCTCGAGATGCTGGAGGAAAGCAACTAGCAGCAGCA
GCAGCAACAACAACAATGCGATCATCCTTATTGCGCCGCTGTCTGCTTCG
CCAGCCGTGCCTCCAGTCGCATGAACAGTACAGCAGACAGTACGAAAGTT
ATCTCTGTCTAGGGAAGGTGCTTTGCAGTACGGATACAGCTGGCATGGCA
TCATCGCGTGCTATTTTTTGGGGTCTACTCGGAGGTGCAGTAGTTTCCAC
CAGCGGTTTCGTTCTTCCGCCGCCCCCATCCGCACCAGTTGTGCATCTTC
ATCAAGTTGTTCGCGTTTTCGCGTTTGCACCTCGAGATGCTGGAGGAAAG
CAACTAGCAGCAGCAGCAGCAACAACAACA
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