mRNA_H-paniculata_contig20456.5303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20456.5303.1
Unique NamemRNA_H-paniculata_contig20456.5303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: D7FPG4_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG4_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 2.720e-109
Identity = 171/292 (58.56%), Postives = 200/292 (68.49%), Query Frame = 1
Query:    1 CDGQRKDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDG------ITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLIDAGHGECTPTIPENAEETVGKTCT----SLGRGAWDDGRWTLFALEQARDVMHGLTVEPCASHLFLAENEEQGQTKDGGSDGLCGGMGG 846
            CD Q +DDYRFVYIGPPGS+T LHHDVLNSFSWSFNVCG KHW LFP EATP L+DRYGR+L  DVR GRAD  KFPRL+ A RLEV+Q  GEAIFVPSGWHHQVVNTGDG      +T+SVNTNWFNGFNL +V  FL +EL AVR ALDHLRE MSG      T   REWE QCE++MRANS+ N+T+FAR+V ARA+ L+ A   + +    ++ E   G   +    S G GAW   RW + AL+Q R V+  L V P A H+FL +  +     D   DG   G GG
Sbjct:  147 CDRQGQDDYRFVYIGPPGSFTGLHHDVLNSFSWSFNVCGSKHWTLFPTEATPDLYDRYGRDLAKDVRSGRADPDKFPRLDAAPRLEVYQGPGEAIFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLHSELSAVRAALDHLRETMSGGGGAGGTGGRREWENQCELVMRANSSFNVTDFARLVTARAQHLLGARAAQDS-LCDDDPERCRGSGASGRGSSSGSGAWQQERWVVLALQQLRAVLRELLVAPSADHVFLDDGGDSASLPD--EDGATSGEGG 435          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: A0A8K1CS59_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS59_PYTOL)

HSP 1 Score: 189 bits (480), Expect = 1.980e-54
Identity = 93/189 (49.21%), Postives = 124/189 (65.61%), Query Frame = 1
Query:   10 QRKDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVAR 576
            +  DDYRFVYIGP GSWTPLHHDV  S+SWS NVCG+K W+ F P+    L D++GR ++ D+     D   +PR  EA  L V Q +GEAIFVPSGW+HQV N  D  TIS+N NWFNGFN+  +++F  +E  AV   L+HL+E       G +  D R+   QC++IM+AN+ +N  EF ++V A+
Sbjct:  141 ESSDDYRFVYIGPAGSWTPLHHDVFRSYSWSVNVCGQKEWIFFHPDEESKLKDKFGRTVLPDITSKDYDKDLYPRAHEATPLYVVQDSGEAIFVPSGWYHQVRNVRD--TISINHNWFNGFNILEIWSFFKSEYAAVETELEHLKEI------GLTGLDFRD---QCQLIMQANTGMNYVEFRQLVEAK 318          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: K3X8M4_GLOUD (JmjC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8M4_GLOUD)

HSP 1 Score: 189 bits (481), Expect = 2.330e-54
Identity = 93/194 (47.94%), Postives = 124/194 (63.92%), Query Frame = 1
Query:   10 QRKDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLI 591
            Q  DDYRFVYIGP GSWTP+HHDV  S+SWS N+ GRK W+ F P+    L DR+GR ++ DV     D  +FP + EA  + V Q+ GEAIFVPSGW+HQV N     TIS+N NWFNG+NL +++ F   E  AV   L+ L+E             GRE++ QC+V+M+AN+ +N TEF  M+ ++A  L+
Sbjct:  136 QSGDDYRFVYIGPAGSWTPMHHDVFRSYSWSVNITGRKEWIFFHPDEEWKLKDRFGRYVIPDVTMEDVDRTQFPHIHEAIPIHVTQETGEAIFVPSGWYHQVKNVE--ATISINHNWFNGYNLDQLWQFFQREYDAVENELEDLKE---------LGLVGREFKDQCQVVMKANTGINYTEFRAMLYSKAHELL 318          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: G4YKL4_PHYSP (JmjC domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKL4_PHYSP)

HSP 1 Score: 188 bits (478), Expect = 2.460e-54
Identity = 90/192 (46.88%), Postives = 123/192 (64.06%), Query Frame = 1
Query:   16 KDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLI 591
            + DYRFVY+GP GSWTPLHHDV  S+SWS NVCGRK W+ + P+  P L DR+GR ++ DV     D  K+P   EA+ + V Q+ G+AIFVPSGW+HQV N  D  TIS+N NWFNG+N+  ++ F   E  AV   L+ L+E             GRE+  QC+++M AN+ +N  EF  ++ A+A +L+
Sbjct:  134 ESDYRFVYLGPAGSWTPLHHDVFRSYSWSVNVCGRKEWIFYHPDDEPKLKDRFGRFVLPDVTAEDVDREKYPHFHEAKPIYVIQETGDAIFVPSGWYHQVRNLED--TISINHNWFNGYNVRELWEFFKREYAAVEHELEDLKE---------MGLVGREFVDQCQLVMLANTGINYVEFRELLYAKASYLL 314          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: A0A329T2P2_9STRA (JmjC domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T2P2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.620e-54
Identity = 92/193 (47.67%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   16 KDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLID 594
            + DYRFVY+GP GSWTPLH DV  S+SWS NVCGRK WV + P+    L DR+GR +V+DV  G  D   +P   EA+ + V Q+ G+AIFVPSGW+HQV N  D  TIS+N NWFNG+N+  ++ F   E  AV   L+ L+E             GRE+  QC+++MRAN+ +N  EF  ++ A+AR L++
Sbjct:  134 ESDYRFVYLGPAGSWTPLHQDVFRSYSWSVNVCGRKKWVFYHPDDESKLKDRFGRLVVSDVTVGNIDKENYPHFHEAKPVYVIQETGDAIFVPSGWYHQVENLED--TISINHNWFNGYNVRELWDFFKKEYAAVERELEDLKE---------MGLVGREFVDQCQLVMRANTGINYLEFRELLYAKARELLE 315          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: A0A2P4Y7M9_9STRA (Clavaminate synthase-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7M9_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.150e-54
Identity = 94/211 (44.55%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   16 KDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLIDAGHGECTPTIPENAEETV 648
            + DYRFVY+GP GSWTPLH DV  S+SWS NVCGRK WV + P+    L DR+GR +V DV  G  D+  +P+  EA+ + V Q+ G+AIFVPSGW+HQV N  D  TIS+N NWFNG+N+  +++F   E  AV   L  L+E             GRE+  QC+++M AN+ +N  EF  ++ A+A+ L+           PE+++ TV
Sbjct:  134 ESDYRFVYLGPAGSWTPLHQDVFRSYSWSVNVCGRKEWVFYHPDDESKLKDRFGRYVVPDVTMGNIDIKIYPQFREAKPVYVTQETGDAIFVPSGWYHQVKNLED--TISINHNWFNGYNVRELWSFFKREYAAVEHELGDLKE---------MGLVGREFVDQCQLVMLANTGINYVEFRELLYAKAKELL------AQQEYPEDSKSTV 327          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: A0A225X319_9STRA (JmjC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X319_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.440e-53
Identity = 91/190 (47.89%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   22 DYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLI 591
            DYRFVY+GP GSWTPLH DV  S+SWS NVCGRK WV + P+    L DR+GR +V DV  G  D  K+P+  EA+ + V Q+ G+AIFVPSGW+HQV N  D  TIS+N NWFNG+N+  ++ F   E  AV  AL+ L+E             GRE+  QC+++M AN+ +N  EF  ++ A+   L+
Sbjct:  136 DYRFVYLGPAGSWTPLHQDVFRSYSWSVNVCGRKEWVFYHPDDESKLKDRFGRFVVPDVAVGNIDKEKYPQFHEAKPVYVIQETGDAIFVPSGWYHQVKNLED--TISINHNWFNGYNIRELWGFFKREYAAVEHALEDLKE---------MGLVGREFVDQCQLVMLANTGINYVEFRELLYAKTNVLL 314          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: A0A485KUP5_9STRA (Aste57867_11851 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUP5_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.870e-53
Identity = 90/195 (46.15%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    1 CDGQRKDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARF 585
            CD    DDYRFVY GP GS+TPLHHDVL S+SWS N+ G+K W+L+PP  TP L DR+GR    D     A+  +FP +  A+ + + Q  G A+FVPSGW+HQV N G+  T+S+N NWFN + L R++ FL  EL AV   + H R       DG  + D  EW   C++++RAN  +N+ EF  ++VAR ++
Sbjct:  146 CDN---DDYRFVYFGPGGSFTPLHHDVLESYSWSINIVGQKEWLLYPPSQTPKLLDRFGRTSARDATT--ANATQFPGVASARHVTIVQDVGTALFVPSGWYHQVRNLGE--TLSINHNWFNAYTLRRIWAFLQRELQAVEREIAHCR-------DGFDSDD--EWTNHCQLLLRANIGMNMGEFRDLLVARLKY 324          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: D0MYT3_PHYIT (JmjC domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYT3_PHYIT)

HSP 1 Score: 186 bits (472), Expect = 2.700e-53
Identity = 92/198 (46.46%), Postives = 127/198 (64.14%), Query Frame = 1
Query:   22 DYRFVYIG------PPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLRE-DMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLID 594
            DYRFVY+G      P GSWTPLHHDV  S+SWS NVCGRK WV + P+  P L DR+GR +V DV  G+ D  ++P+  EA+ + V Q+ G+AIFVPSGW+HQV N  D  TIS+N NWFNG+N+  ++ F   E  AV   L+ L+E  + GR+ G+          QC+++M AN+ +N  EF  ++ A+A  L++
Sbjct:  136 DYRFVYLGEFVLTRPAGSWTPLHHDVFRSYSWSVNVCGRKKWVFYHPDDEPKLKDRFGRFVVPDVTIGKIDTEQYPQFHEAKPIHVVQETGDAIFVPSGWYHQVENLED--TISINHNWFNGYNVREMWKFFKREYAAVERELEDLKEMGLVGREFGD----------QCQLVMLANTGINYVEFRELLYAKASQLLE 321          
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Match: W4GAV2_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAV2_9STRA)

HSP 1 Score: 185 bits (470), Expect = 8.050e-53
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1
Query:   19 DDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEATPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSGWHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLREDMSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVAR 576
            DDYRFVY+GP  S TPLHHDVL S+SWS N+CG+K W++FPP  T  L DR GR   T       D   FP +  A+ ++V Q+ GEA+FVPSGW+HQV N  +G T+S+N NWFN ++L R++ F+  ELHAV + +DH RE      D         W   C+V++RAN  ++  EFA ++ AR
Sbjct:  148 DDYRFVYLGPANSTTPLHHDVLLSYSWSINICGKKEWLMFPPTETWKLRDRSGR--YTAPSANTVDATAFPNVTSARYIKVVQEVGEALFVPSGWYHQVRNL-EGTTLSINHNWFNAYSLERMWAFMQAELHAVEQEIDHCRETFDSDDD---------WHHHCQVLLRANIGMHFNEFAALLQAR 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20456.5303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPG4_ECTSI2.720e-10958.56JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8K1CS59_PYTOL1.980e-5449.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X8M4_GLOUD2.330e-5447.94JmjC domain-containing protein n=1 Tax=Globisporan... [more]
G4YKL4_PHYSP2.460e-5446.88JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
A0A329T2P2_9STRA4.620e-5447.67JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2P4Y7M9_9STRA5.150e-5444.55Clavaminate synthase-like protein n=1 Tax=Phytopht... [more]
A0A225X319_9STRA1.440e-5347.89JmjC domain-containing protein n=1 Tax=Phytophthor... [more]
A0A485KUP5_9STRA1.870e-5346.15Aste57867_11851 protein n=1 Tax=Aphanomyces stella... [more]
D0MYT3_PHYIT2.700e-5346.46JmjC domain-containing protein n=2 Tax=Phytophthor... [more]
W4GAV2_9STRA8.050e-5347.31JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20456contigH-paniculata_contig20456:200..2264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1.2e-88
Seed eggNOG ortholog2880.D7FPG4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size846
Cds size846
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20456.5303.1prot_H-paniculata_contig20456.5303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20456 200..2264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.1700883-CDS-H-paniculata_contig20456:199..2881622929532.1700883-CDS-H-paniculata_contig20456:199..288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 200..288 +
1691480901.5184572-CDS-H-paniculata_contig20456:199..2881691480901.5184572-CDS-H-paniculata_contig20456:199..288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 200..288 +
1622929532.1811717-CDS-H-paniculata_contig20456:718..7991622929532.1811717-CDS-H-paniculata_contig20456:718..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 719..799 +
1691480901.5304165-CDS-H-paniculata_contig20456:718..7991691480901.5304165-CDS-H-paniculata_contig20456:718..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 719..799 +
1622929532.1942866-CDS-H-paniculata_contig20456:1274..14161622929532.1942866-CDS-H-paniculata_contig20456:1274..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 1275..1416 +
1691480901.5383267-CDS-H-paniculata_contig20456:1274..14161691480901.5383267-CDS-H-paniculata_contig20456:1274..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 1275..1416 +
1622929532.203236-CDS-H-paniculata_contig20456:1730..22641622929532.203236-CDS-H-paniculata_contig20456:1730..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 1731..2264 +
1691480901.5457563-CDS-H-paniculata_contig20456:1730..22641691480901.5457563-CDS-H-paniculata_contig20456:1730..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20456 1731..2264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20456.5303.1

>prot_H-paniculata_contig20456.5303.1 ID=prot_H-paniculata_contig20456.5303.1|Name=mRNA_H-paniculata_contig20456.5303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
CDGQRKDDYRFVYIGPPGSWTPLHHDVLNSFSWSFNVCGRKHWVLFPPEA
TPHLFDRYGRELVTDVRKGRADVAKFPRLEEAQRLEVHQQAGEAIFVPSG
WHHQVVNTGDGITISVNTNWFNGFNLARVYTFLLTELHAVREALDHLRED
MSGRQDGNSTQDGREWERQCEVIMRANSALNITEFARMVVARARFLIDAG
HGECTPTIPENAEETVGKTCTSLGRGAWDDGRWTLFALEQARDVMHGLTV
EPCASHLFLAENEEQGQTKDGGSDGLCGGMGG
back to top

mRNA from alignment at H-paniculata_contig20456:200..2264+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20456.5303.1 ID=mRNA_H-paniculata_contig20456.5303.1|Name=mRNA_H-paniculata_contig20456.5303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2065bp|location=Sequence derived from alignment at H-paniculata_contig20456:200..2264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGATGGCCAACGGAAAGATGACTACCGATTCGTGTACATAGGCCCCCC AGGATCATGGACACCGTTGCACCATGATGTTTTGAACAGGTACGCGCGTG CTACGTGCAGTTTAACGCGGCATAGGCCGAGTATTCAGCGGCCTCGAGTG TCTCTCGGCCACACTCTATATCCTGGTAGGTTTGTACAAATATACGTAGA GCCAAGATCTTGAGGACTGCTGTGCTCTGATTGCTGGAGAGCGCTACAAA ACGAAGACGCAGAAACTTTGCACGACGAGGCGCCCGACGCCCTCTGCAGA ATCTACCGACTCAACGGCAACGCATGTGATCATGCCCAAGACCCACCCGG TGTTTGCAGCTTTTTAACGCGATCCGAACGAATTCACGCAACGTTGTGGG GTTTACAGTGGATGCGCGTTTGATCCGCAGATCCACGCGTCAGACAACCT TCACCGTCCCTCGCGTTTACCAGGTCCCTCCGCTCTTCATGCTTCTCCTT TTGTTTGTCGTCGGTACAGCTTCAGCTGGTCATTCAATGTGTGCGGTCGA AAACACTGGGTCCTTTTCCCCCCGGAGGCTACTCCACATCTCTTCGACAG GTGATTGCCACGGCGATGTCGCGTGTTGACGCTTCGAGCGTACGTCGCTC AGTCTCAGGGCGGGTGTGCTAATGCAGGTGTTGGGGATGATGATGATGAT GATGATGATGATGATTATGATGTTCCATATTGCGGGTGTTTGCGATATCC CCATATTTTCGTGCAGCAGATTTACTCGCCGCCTTCAATTGGTGTGAATT GTCACTACAGTGCCCTCATTAGCCTCGAGCGCGGTCGGTCAACCTTACCC AAGGTTTTCGAGTGTAGACTTTGAGATGCGCTCTTACGATTTCCGGTATG TTGCTGCTGAAGTAAACAACACTCTCGGAGACACGAGAATTCCACATCGT TCTTTCCGAAGAGCTCGAGTAAAGGTGGAATTGCGAGGAGTAAATATCGA AGTGATCGTTGCTTTGACAATTCCATTTTCCCTTTCGAAATTGCGCTACT TAATTCGCTTATGTTGACTCGACAGATATGGGCGGGAGCTGGTGACTGAC GTACGCAAAGGCCGCGCGGATGTCGCGAAATTCCCTCGTTTAGAGGAAGC GCAAAGACTAGAGGTTCATCAACAGGCTGGAGAGGCCATTTTCGTGCCTT CCGGGTGGCACCACCAGGTTGGGAGGGCCTCTGCGTCGATTGGAACGAAT TTCAGCTTTCCTCGTGGCTGCTGTGCTAATCCTCGGTTCCTCTTATTCAC CATTAGCGTTTCGATTCCCGCCCTCATTTCTACTGGAAAATAACTCAACG CAAGGATAACATCCTCCTCATGACGTGAGTGTTCATGAAACGACCATTCG GTTAATAATTTAGTAGATAGCATTGCCCCGTTCCGCCGACGCGCCTTGCC CCCCTGCCCCCCTGCCCATTCTCTACCTACATTCCCATGACATGTGTCTG TGGCCTCTTTGCTCGAAACGTATTTGGCAAGGTGGTTAACACGGGCGACG GGATTACGATTTCGGTGAACACCAACTGGTTCAACGGTTTCAATCTGGCG AGAGTATATACCTTTCTTCTGACCGAGCTCCACGCAGTGCGCGAGGCCCT CGACCACCTTCGCGAGGACATGTCGGGACGTCAGGACGGAAACTCTACGC AGGACGGGCGAGAATGGGAACGCCAGTGCGAAGTGATCATGCGCGCCAAC AGCGCCCTAAATATCACCGAATTCGCCCGGATGGTGGTGGCGCGAGCGCG GTTTCTGATTGACGCCGGCCACGGCGAGTGTACGCCTACGATTCCGGAGA ACGCGGAAGAGACGGTTGGAAAAACGTGCACGTCTTTGGGGAGGGGTGCA TGGGATGACGGGAGGTGGACTCTGTTTGCCCTCGAGCAGGCTAGGGATGT GATGCATGGATTGACAGTGGAGCCCTGTGCTAGTCATTTGTTTCTAGCCG AAAACGAAGAGCAAGGGCAGACGAAAGATGGTGGTAGTGATGGATTGTGC GGTGGTATGGGTGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20456:200..2264+

>mRNA_H-paniculata_contig20456.5303.1 ID=mRNA_H-paniculata_contig20456.5303.1|Name=mRNA_H-paniculata_contig20456.5303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig20456:200..2264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGATGGCCAACGGAAAGATGACTACCGATTCGTGTACATAGGCCCCCC
AGGATCATGGACACCGTTGCACCATGATGTTTTGAACAGTGTGATGGCCA
ACGGAAAGATGACTACCGATTCGTGTACATAGGCCCCCCAGGATCATGGA
CACCGTTGCACCATGATGTTTTGAACAGCTTCAGCTGGTCATTCAATGTG
TGCGGTCGAAAACACTGGGTCCTTTTCCCCCCGGAGGCTACTCCACATCT
CTTCGACAGCTTCAGCTGGTCATTCAATGTGTGCGGTCGAAAACACTGGG
TCCTTTTCCCCCCGGAGGCTACTCCACATCTCTTCGACAGATATGGGCGG
GAGCTGGTGACTGACGTACGCAAAGGCCGCGCGGATGTCGCGAAATTCCC
TCGTTTAGAGGAAGCGCAAAGACTAGAGGTTCATCAACAGGCTGGAGAGG
CCATTTTCGTGCCTTCCGGGTGGCACCACCAGATATGGGCGGGAGCTGGT
GACTGACGTACGCAAAGGCCGCGCGGATGTCGCGAAATTCCCTCGTTTAG
AGGAAGCGCAAAGACTAGAGGTTCATCAACAGGCTGGAGAGGCCATTTTC
GTGCCTTCCGGGTGGCACCACCAGGTGGTTAACACGGGCGACGGGATTAC
GATTTCGGTGAACACCAACTGGTTCAACGGTTTCAATCTGGCGAGAGTAT
ATACCTTTCTTCTGACCGAGCTCCACGCAGTGCGCGAGGCCCTCGACCAC
CTTCGCGAGGACATGTCGGGACGTCAGGACGGAAACTCTACGCAGGACGG
GCGAGAATGGGAACGCCAGTGCGAAGTGATCATGCGCGCCAACAGCGCCC
TAAATATCACCGAATTCGCCCGGATGGTGGTGGCGCGAGCGCGGTTTCTG
ATTGACGCCGGCCACGGCGAGTGTACGCCTACGATTCCGGAGAACGCGGA
AGAGACGGTTGGAAAAACGTGCACGTCTTTGGGGAGGGGTGCATGGGATG
ACGGGAGGTGGACTCTGTTTGCCCTCGAGCAGGCTAGGGATGTGATGCAT
GGATTGACAGTGGAGCCCTGTGCTAGTCATTTGTTTCTAGCCGAAAACGA
AGAGCAAGGGCAGACGAAAGATGGTGGTAGTGATGGATTGTGCGGTGGTA
TGGGTGGCGTGGTTAACACGGGCGACGGGATTACGATTTCGGTGAACACC
AACTGGTTCAACGGTTTCAATCTGGCGAGAGTATATACCTTTCTTCTGAC
CGAGCTCCACGCAGTGCGCGAGGCCCTCGACCACCTTCGCGAGGACATGT
CGGGACGTCAGGACGGAAACTCTACGCAGGACGGGCGAGAATGGGAACGC
CAGTGCGAAGTGATCATGCGCGCCAACAGCGCCCTAAATATCACCGAATT
CGCCCGGATGGTGGTGGCGCGAGCGCGGTTTCTGATTGACGCCGGCCACG
GCGAGTGTACGCCTACGATTCCGGAGAACGCGGAAGAGACGGTTGGAAAA
ACGTGCACGTCTTTGGGGAGGGGTGCATGGGATGACGGGAGGTGGACTCT
GTTTGCCCTCGAGCAGGCTAGGGATGTGATGCATGGATTGACAGTGGAGC
CCTGTGCTAGTCATTTGTTTCTAGCCGAAAACGAAGAGCAAGGGCAGACG
AAAGATGGTGGTAGTGATGGATTGTGCGGTGGTATGGGTGGC
back to top