mRNA_H-paniculata_contig20452.5301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A6H5KHF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF3_9PHAE) HSP 1 Score: 104 bits (259), Expect = 6.560e-27 Identity = 55/106 (51.89%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 16 WEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRP--------------------------PSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVWDK 255
WEYDHDVLVVGGGIVGCTLAC A P P++GLIEARPP SLEAALAR PDPRVYS+ P+S +L K+GVWD+
Sbjct: 3 WEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTSGLPPLSTGKDXXXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGSPDPRVYSLAPSSVEILGKLGVWDE 108
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI) HSP 1 Score: 105 bits (263), Expect = 8.800e-25 Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 10 SSWEYDHDVLVVGGGIVGCTLAC-----------------PCASGNRD---------PIPRPPSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVWDK 255
+ WEYDHDVLVVGGGIVGCTLAC P ++G D P++GLIEARPP SLEAALAR PDPRVYS+ P+S +L K+GVWD+
Sbjct: 40 AGWEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTIGLPPLSTGKDDGXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGAPDPRVYSLAPSSVEILGKLGVWDE 147
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A835Z6E6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.440e-14 Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 13 SWEYDHDVLVVGGGIVGCTLAC-----PCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVW 249
+W+YD+DVLVVGGGIVG LAC P A G+ IGL+E R P ++ +AR PD RVY++ P+S L VG W
Sbjct: 30 AWDYDYDVLVVGGGIVGAALACKLAEIPKAGGSF-------KIGLVEGRAPPTVADVMARPTPDARVYTLAPSSVHFLDSVGAW 106
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: W7U180_9STRA (Ubiquinone biosynthesis monooxygenase coq6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U180_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.000e-12 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 10 SSWEYDHDVLVVGGGIVGCTLACPCAS--GNRDPIPRPPSIGLIEARPPVSLEAALAREG-PDPRVYSITPASATLLKKVGVWD 252
S+ +D+DV+++GGGIVG +LAC A G R + I L+E RPP L A LA + PDPRVY++ PAS L+ +G W
Sbjct: 32 STDSWDYDVIILGGGIVGASLACSLAENVGQRHGM----KIALLEIRPPPPLAACLAPDRLPDPRVYALAPASVAFLESLGAWQ 111
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A7S2S5V6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V6_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 6.180e-11 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 7 QSSWEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALA-REGPDPRVYSITPASATLLKKVGVWD 252
S +DHDV VVGGG+VG A A + I + +IG++E RPP LE AL+ PD R Y++TP S L+ +GVW
Sbjct: 49 SSELNWDHDVTVVGGGVVGAAAAIRLAESS---IFQGSNIGVVETRPPPGLEEALSPATPPDVRTYAMTPGSEKFLRSLGVWQ 128
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: UPI001FB17F5E (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17F5E) HSP 1 Score: 65.5 bits (158), Expect = 1.570e-10 Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVW 249
HD+++VGGG+VG LAC A+ P+ + S+ +++ P + E+++ E P DPRV +ITPAS + LK +G W
Sbjct: 54 HDIVIVGGGMVGMALACALAN---TPLTKHLSVAIVDKNPTLGKESSIRNEDPPDPRVSTITPASMSFLKDIGAW 125
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A5N6Q010_9ASTR (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q010_9ASTR) HSP 1 Score: 63.5 bits (153), Expect = 7.550e-10 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAR-EGPDPRVYSITPASATLLKKVGVWD 252
HD+ +VGGG+VG LAC AS P+ + SI +I++ P +S + + E PDPRV ++TPA+ +L K +G W+
Sbjct: 90 HDIAIVGGGMVGMALACSLASM---PLTKHLSIAIIDSNPALSNGPIIKKNEPPDPRVSTVTPATISLFKDIGAWE 162
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A5N6Q081_9ASTR (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q081_9ASTR) HSP 1 Score: 63.5 bits (153), Expect = 7.670e-10 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAR-EGPDPRVYSITPASATLLKKVGVWD 252
HD+ +VGGG+VG LAC AS P + SI +I++ P +S + + + E PDPRV ++TPA+ +L K +G W+
Sbjct: 330 HDIAIVGGGMVGMALACSLASM---PFTKHLSIAIIDSNPALSNGSIIKKNEPPDPRVSTVTPATISLFKDIGAWE 402
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A7J7CWM1_TRIWF (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CWM1_TRIWF) HSP 1 Score: 63.2 bits (152), Expect = 1.020e-9 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVWD 252
HD+ +VGGG+VG LAC A R P+ + ++ +I+ P + + RE P DPRV ++TPA+ +L K +G W
Sbjct: 52 HDIAIVGGGMVGMALACSLA---RMPLTKHLNVAIIDGNPTLGRRECIKREDPPDPRVSTVTPATISLFKDIGAWQ 124
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A2J6KEJ6_LACSA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KEJ6_LACSA) HSP 1 Score: 62.0 bits (149), Expect = 2.610e-9 Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVWD 252
HD+ +VGGG+VG LAC AS P+ + SI +I++ P ++ ++ ++ P DPRV ++TPA+ +L K +G W+
Sbjct: 55 HDIAIVGGGMVGMALACSLASM---PLTKHLSIAIIDSNPALTNMPSIKKDDPPDPRVSTVTPATISLFKGIGAWE 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20452.5301.1 >prot_H-paniculata_contig20452.5301.1 ID=prot_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp MIQSSWEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPback to top mRNA from alignment at H-paniculata_contig20452:1191..1493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20452.5301.1 ID=mRNA_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig20452:1191..1493- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20452:1191..1493- >mRNA_H-paniculata_contig20452.5301.1 ID=mRNA_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig20452:1191..1493- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |