mRNA_H-paniculata_contig20452.5301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20452.5301.1
Unique NamemRNA_H-paniculata_contig20452.5301.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A6H5KHF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.560e-27
Identity = 55/106 (51.89%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   16 WEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRP--------------------------PSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVWDK 255
            WEYDHDVLVVGGGIVGCTLAC  A       P                            P++GLIEARPP SLEAALAR  PDPRVYS+ P+S  +L K+GVWD+
Sbjct:    3 WEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTSGLPPLSTGKDXXXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGSPDPRVYSLAPSSVEILGKLGVWDE 108          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.800e-25
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   10 SSWEYDHDVLVVGGGIVGCTLAC-----------------PCASGNRD---------PIPRPPSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVWDK 255
            + WEYDHDVLVVGGGIVGCTLAC                 P ++G  D              P++GLIEARPP SLEAALAR  PDPRVYS+ P+S  +L K+GVWD+
Sbjct:   40 AGWEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTIGLPPLSTGKDDGXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGAPDPRVYSLAPSSVEILGKLGVWDE 147          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A835Z6E6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.440e-14
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   13 SWEYDHDVLVVGGGIVGCTLAC-----PCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGPDPRVYSITPASATLLKKVGVW 249
            +W+YD+DVLVVGGGIVG  LAC     P A G+         IGL+E R P ++   +AR  PD RVY++ P+S   L  VG W
Sbjct:   30 AWDYDYDVLVVGGGIVGAALACKLAEIPKAGGSF-------KIGLVEGRAPPTVADVMARPTPDARVYTLAPSSVHFLDSVGAW 106          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: W7U180_9STRA (Ubiquinone biosynthesis monooxygenase coq6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U180_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   10 SSWEYDHDVLVVGGGIVGCTLACPCAS--GNRDPIPRPPSIGLIEARPPVSLEAALAREG-PDPRVYSITPASATLLKKVGVWD 252
            S+  +D+DV+++GGGIVG +LAC  A   G R  +     I L+E RPP  L A LA +  PDPRVY++ PAS   L+ +G W 
Sbjct:   32 STDSWDYDVIILGGGIVGASLACSLAENVGQRHGM----KIALLEIRPPPPLAACLAPDRLPDPRVYALAPASVAFLESLGAWQ 111          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A7S2S5V6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.180e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    7 QSSWEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALA-REGPDPRVYSITPASATLLKKVGVWD 252
             S   +DHDV VVGGG+VG   A   A  +   I +  +IG++E RPP  LE AL+    PD R Y++TP S   L+ +GVW 
Sbjct:   49 SSELNWDHDVTVVGGGVVGAAAAIRLAESS---IFQGSNIGVVETRPPPGLEEALSPATPPDVRTYAMTPGSEKFLRSLGVWQ 128          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: UPI001FB17F5E (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17F5E)

HSP 1 Score: 65.5 bits (158), Expect = 1.570e-10
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVW 249
            HD+++VGGG+VG  LAC  A+    P+ +  S+ +++  P +  E+++  E P DPRV +ITPAS + LK +G W
Sbjct:   54 HDIVIVGGGMVGMALACALAN---TPLTKHLSVAIVDKNPTLGKESSIRNEDPPDPRVSTITPASMSFLKDIGAW 125          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A5N6Q010_9ASTR (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q010_9ASTR)

HSP 1 Score: 63.5 bits (153), Expect = 7.550e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAR-EGPDPRVYSITPASATLLKKVGVWD 252
            HD+ +VGGG+VG  LAC  AS    P+ +  SI +I++ P +S    + + E PDPRV ++TPA+ +L K +G W+
Sbjct:   90 HDIAIVGGGMVGMALACSLASM---PLTKHLSIAIIDSNPALSNGPIIKKNEPPDPRVSTVTPATISLFKDIGAWE 162          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A5N6Q081_9ASTR (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q081_9ASTR)

HSP 1 Score: 63.5 bits (153), Expect = 7.670e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAR-EGPDPRVYSITPASATLLKKVGVWD 252
            HD+ +VGGG+VG  LAC  AS    P  +  SI +I++ P +S  + + + E PDPRV ++TPA+ +L K +G W+
Sbjct:  330 HDIAIVGGGMVGMALACSLASM---PFTKHLSIAIIDSNPALSNGSIIKKNEPPDPRVSTVTPATISLFKDIGAWE 402          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A7J7CWM1_TRIWF (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CWM1_TRIWF)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-9
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVWD 252
            HD+ +VGGG+VG  LAC  A   R P+ +  ++ +I+  P +     + RE P DPRV ++TPA+ +L K +G W 
Sbjct:   52 HDIAIVGGGMVGMALACSLA---RMPLTKHLNVAIIDGNPTLGRRECIKREDPPDPRVSTVTPATISLFKDIGAWQ 124          
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Match: A0A2J6KEJ6_LACSA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KEJ6_LACSA)

HSP 1 Score: 62.0 bits (149), Expect = 2.610e-9
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   28 HDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPPVSLEAALAREGP-DPRVYSITPASATLLKKVGVWD 252
            HD+ +VGGG+VG  LAC  AS    P+ +  SI +I++ P ++   ++ ++ P DPRV ++TPA+ +L K +G W+
Sbjct:   55 HDIAIVGGGMVGMALACSLASM---PLTKHLSIAIIDSNPALTNMPSIKKDDPPDPRVSTVTPATISLFKGIGAWE 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20452.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHF3_9PHAE6.560e-2751.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J7_ECTSI8.800e-2551.85Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A835Z6E6_9STRA3.440e-1446.43Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
W7U180_9STRA2.000e-1245.24Ubiquinone biosynthesis monooxygenase coq6 n=1 Tax... [more]
A0A7S2S5V6_9STRA6.180e-1143.37Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
UPI001FB17F5E1.570e-1041.33ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A5N6Q010_9ASTR7.550e-1042.11Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A5N6Q081_9ASTR7.670e-1042.11Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A7J7CWM1_TRIWF1.020e-939.47Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A2J6KEJ6_LACSA2.610e-939.47Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20452contigH-paniculata_contig20452:1191..1493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4.2e-21
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.081262-CDS-H-paniculata_contig20452:1190..13661622929532.081262-CDS-H-paniculata_contig20452:1190..1366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20452 1191..1366 -
1691480901.474213-CDS-H-paniculata_contig20452:1190..13661691480901.474213-CDS-H-paniculata_contig20452:1190..1366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20452 1191..1366 -
1622929532.0921803-CDS-H-paniculata_contig20452:1414..14931622929532.0921803-CDS-H-paniculata_contig20452:1414..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20452 1415..1493 -
1691480901.485893-CDS-H-paniculata_contig20452:1414..14931691480901.485893-CDS-H-paniculata_contig20452:1414..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20452 1415..1493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20452.5301.1prot_H-paniculata_contig20452.5301.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20452 1191..1493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20452.5301.1

>prot_H-paniculata_contig20452.5301.1 ID=prot_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MIQSSWEYDHDVLVVGGGIVGCTLACPCASGNRDPIPRPPSIGLIEARPP
VSLEAALAREGPDPRVYSITPASATLLKKVGVWDK
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mRNA from alignment at H-paniculata_contig20452:1191..1493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20452.5301.1 ID=mRNA_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig20452:1191..1493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCAATCCAGTTGGGAATACGACCACGACGTGCTGGTGGTCGGCGG CGGTATCGTAGGATGCACGCTCGCCTGTCGTCTCGCTCAAGAGGCTACCG CAGCAGCTGCAGCAACAATACCAAAAGCCTGCGCCAGCGGCAATCGAGAC CCCATACCCCGCCCTCCATCCATCGGGCTTATCGAAGCGCGTCCGCCTGT TTCGCTGGAGGCGGCTTTGGCGCGAGAAGGTCCCGACCCCAGGGTGTACT CTATCACGCCAGCGTCCGCGACGTTGCTCAAGAAAGTTGGCGTTTGGGAT AAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20452:1191..1493-

>mRNA_H-paniculata_contig20452.5301.1 ID=mRNA_H-paniculata_contig20452.5301.1|Name=mRNA_H-paniculata_contig20452.5301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig20452:1191..1493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCAATCCAGTTGGGAATACGACCACGACGTGCTGGTGGTCGGCGG
CGGTATCGTAGGATGCACGCTCGCCTGTCATGATCCAATCCAGTTGGGAA
TACGACCACGACGTGCTGGTGGTCGGCGGCGGTATCGTAGGATGCACGCT
CGCCTGTCCCTGCGCCAGCGGCAATCGAGACCCCATACCCCGCCCTCCAT
CCATCGGGCTTATCGAAGCGCGTCCGCCTGTTTCGCTGGAGGCGGCTTTG
GCGCGAGAAGGTCCCGACCCCAGGGTGTACTCTATCACGCCAGCGTCCGC
GACGTTGCTCAAGAAAGTTGGCGTTTGGGATAAGCCTGCGCCAGCGGCAA
TCGAGACCCCATACCCCGCCCTCCATCCATCGGGCTTATCGAAGCGCGTC
CGCCTGTTTCGCTGGAGGCGGCTTTGGCGCGAGAAGGTCCCGACCCCAGG
GTGTACTCTATCACGCCAGCGTCCGCGACGTTGCTCAAGAAAGTTGGCGT
TTGGGATAAG
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