prot_H-paniculata_contig20450.5300.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20450.5300.1
Unique Nameprot_H-paniculata_contig20450.5300.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
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BLAST of mRNA_H-paniculata_contig20450.5300.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.550e-21
Identity = 60/137 (43.80%), Postives = 74/137 (54.01%), Query Frame = 0 
Query:    2 ALVLDGMQVCGGTVKVSHSIHPAVISTPPAPTTTISSTIEGSGGRPST-VQGKNR-PDDWDCVNPDCENRCYGFRVKCNRCGTGKDGTPPPAAGGGQANAGVAPVSAPVSAHRPRLQLGS-ITPRGLRRGIGTNLSA 135
            AL LDG  +CGGT +++ S HPAV++ P                       GK R  +DWDC +PDC+N C+ FR KCNRCG GKDGTPPP     +        S   + HRPRLQLG+ I PR LR    TN +A
Sbjct:  906 ALALDGTSMCGGTAQITRSRHPAVVAAPXXXXXXXXXXXXXXXXXXXXXADGKGRRANDWDCPSPDCDNVCFSFRTKCNRCGMGKDGTPPPK----ELQXXXXXNSVVATQHRPRLQLGAAIRPRALRNERSTNGAA 1038
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20450.5300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI3.550e-2143.80Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1060.10coord: 48..88
e-value: 5.8E-7
score: 30.6
NoneNo IPR availablePANTHERPTHR23238:SF26GH13594P-RELATEDcoord: 39..152
IPR034870TAF15/EWS/TLS familyPANTHERPTHR23238RNA BINDING PROTEINcoord: 39..152
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 55..86
score: 8.739
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 51..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20450contigH-paniculata_contig20450:2056..3749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20450.5300.1mRNA_H-paniculata_contig20450.5300.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20450 1155..3793 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20450.5300.1 ID=prot_H-paniculata_contig20450.5300.1|Name=mRNA_H-paniculata_contig20450.5300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MALVLDGMQVCGGTVKVSHSIHPAVISTPPAPTTTISSTIEGSGGRPSTV
QGKNRPDDWDCVNPDCENRCYGFRVKCNRCGTGKDGTPPPAAGGGQANAG
VAPVSAPVSAHRPRLQLGSITPRGLRRGIGTNLSATNNDTSGGSGSGRNG
TARTSSNTGNNESMFPPSPVARPAGEMSNADFRAMLNKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034870TET_fam
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf